Wall clock time and date at job start Tue Mar 31 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30588 * 122.99401 * 2 1 4 4 C 1.30364 * 117.31563 * 180.02562 * 3 2 1 5 5 C 1.47766 * 124.74050 * 179.97438 * 4 3 2 6 6 C 1.39611 * 120.14519 * 180.02562 * 5 4 3 7 7 C 1.37946 * 119.84935 * 179.97438 * 6 5 4 8 8 C 1.38365 * 120.14931 * 359.97438 * 7 6 5 9 9 C 1.38366 * 120.29943 * 0.02562 * 8 7 6 10 10 C 1.37951 * 120.14630 * 0.02562 * 9 8 7 11 11 S 1.70916 * 110.51870 * 0.24440 * 4 3 2 12 12 C 1.37030 * 122.99054 * 180.02562 * 2 1 3 13 13 C 1.46442 * 126.13200 * 0.02865 * 12 2 1 14 14 O 1.21749 * 120.00279 * 0.02562 * 13 12 2 15 15 N 1.34780 * 120.00146 * 180.02562 * 13 12 2 16 16 C 1.36848 * 120.00016 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00199 * 359.97438 * 16 15 13 18 18 C 1.39021 * 120.00172 * 180.02562 * 16 15 13 19 19 N 1.31390 * 119.99730 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00318 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47348 * 59.99615 * 20 18 16 22 22 H 1.48500 * 109.47109 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46873 * 299.99882 * 20 18 16 24 24 H 1.09003 * 109.47154 * 90.01704 * 1 2 3 25 25 H 1.08994 * 109.47060 * 210.02127 * 1 2 3 26 26 H 1.09004 * 109.46916 * 330.01891 * 1 2 3 27 27 H 1.08000 * 120.07405 * 359.95124 * 6 5 4 28 28 H 1.07999 * 119.93067 * 180.02562 * 7 6 5 29 29 H 1.08001 * 119.85340 * 179.72339 * 8 7 6 30 30 H 1.08003 * 119.93192 * 180.02562 * 9 8 7 31 31 H 1.08005 * 120.07588 * 180.02562 * 10 9 8 32 32 H 0.97002 * 119.99838 * 0.02562 * 15 13 12 33 33 H 0.97003 * 119.99746 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2182 1.0953 0.0000 4 6 3.5154 0.9663 -0.0005 5 6 4.4735 2.0913 -0.0011 6 6 5.8472 1.8423 -0.0022 7 6 6.7362 2.8971 -0.0033 8 6 6.2691 4.1995 -0.0039 9 6 4.9090 4.4534 -0.0029 10 6 4.0091 3.4078 -0.0007 11 16 3.9532 -0.6858 -0.0079 12 6 2.2532 -1.1494 -0.0005 13 6 1.7313 -2.5176 -0.0017 14 8 0.5292 -2.7107 -0.0028 15 7 2.5817 -3.5633 -0.0016 16 6 2.0940 -4.8419 -0.0032 17 1 1.0277 -5.0131 -0.0042 18 6 2.9711 -5.9205 -0.0026 19 7 4.2684 -5.7122 -0.0009 20 14 2.3054 -7.6658 -0.0056 21 1 1.4773 -7.8777 -1.2197 22 1 3.4372 -8.6273 -0.0049 23 1 1.4726 -7.8800 1.2052 24 1 -0.3633 -0.0003 -1.0277 25 1 -0.3633 -0.8897 0.5141 26 1 -0.3633 0.8902 0.5136 27 1 6.2131 0.8261 -0.0018 28 1 7.7991 2.7060 -0.0046 29 1 6.9694 5.0218 -0.0003 30 1 4.5509 5.4724 -0.0038 31 1 2.9476 3.6073 -0.0003 32 1 3.5395 -3.4095 -0.0003 33 1 4.8805 -6.4647 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334418186.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:51 Heat of formation + Delta-G solvation = 23.699114 kcal Electronic energy + Delta-G solvation = -19018.159757 eV Core-core repulsion = 15942.148289 eV Total energy + Delta-G solvation = -3076.011467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.79323 -38.90270 -37.82933 -34.27736 -32.58909 -31.57539 -31.07957 -29.94166 -27.98144 -25.14129 -24.83021 -22.77584 -21.57155 -20.85978 -18.78381 -17.96017 -17.87963 -16.55750 -15.82313 -15.55501 -14.87117 -14.83196 -14.58809 -14.10140 -13.73782 -13.51121 -13.40441 -13.09052 -12.85553 -12.77909 -12.07359 -11.99940 -11.75954 -11.44583 -11.24800 -11.21871 -10.81892 -10.62465 -10.45427 -9.81000 -9.49714 -9.46774 -9.07727 -8.95497 -8.60055 -8.28344 -7.88212 -6.74599 -4.01879 0.26877 1.29808 1.49925 1.60033 2.05352 2.95231 3.12277 3.12822 3.16191 3.79813 3.94563 4.07599 4.13830 4.78085 4.82049 4.84213 5.00178 5.08796 5.13209 5.35919 5.46129 5.57891 5.76685 5.92393 6.05774 6.15102 6.20160 6.30016 6.35900 6.40982 6.44378 6.82260 6.88427 7.24852 7.73535 8.06331 8.29630 8.85929 9.19212 9.76224 10.40970 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.025807 B = 0.004004 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.703203 B = 6991.384251 C = 8060.939662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.100 3.900 3 N -0.460 5.460 4 C 0.039 3.961 5 C -0.010 4.010 6 C -0.106 4.106 7 C -0.117 4.117 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.079 4.079 11 S 0.165 5.835 12 C -0.235 4.235 13 C 0.494 3.506 14 O -0.581 6.581 15 N -0.534 5.534 16 C -0.286 4.286 17 H 0.114 0.886 18 C 0.024 3.976 19 N -0.878 5.878 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.269 1.269 24 H 0.070 0.930 25 H 0.101 0.899 26 H 0.062 0.938 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.393 0.607 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.756 14.584 0.051 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.039 4.039 3 N -0.174 5.174 4 C -0.232 4.232 5 C -0.014 4.014 6 C -0.126 4.126 7 C -0.135 4.135 8 C -0.135 4.135 9 C -0.140 4.140 10 C -0.101 4.101 11 S 0.424 5.576 12 C -0.360 4.360 13 C 0.281 3.719 14 O -0.469 6.469 15 N -0.167 5.167 16 C -0.417 4.417 17 H 0.131 0.869 18 C -0.182 4.182 19 N -0.516 5.516 20 Si 0.766 3.234 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.194 1.194 24 H 0.089 0.911 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.227 0.773 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.911 14.218 0.040 15.398 hybrid contribution -0.390 -0.741 -0.027 0.838 sum 5.520 13.477 0.014 14.564 Atomic orbital electron populations 1.20479 0.86247 1.03742 1.02974 1.20653 0.98204 0.84646 1.00371 1.66034 1.03675 1.31986 1.15727 1.24829 0.93181 0.96792 1.08360 1.17913 0.90799 0.90786 1.01862 1.21227 0.91707 0.99791 0.99895 1.21005 0.99599 0.92360 1.00526 1.21260 0.95685 0.96790 0.99768 1.21121 0.93202 0.99008 1.00704 1.21301 1.00681 0.90867 0.97207 1.83716 1.07108 1.00472 1.66330 1.26388 0.94489 1.00478 1.14689 1.16224 0.86776 0.81677 0.87183 1.90621 1.13946 1.83833 1.58503 1.41963 1.08605 1.05565 1.60601 1.19922 0.95193 0.80693 1.45863 0.86869 1.25496 0.94983 1.01251 0.96428 1.69602 1.01803 1.33890 1.46309 0.85749 0.78334 0.79786 0.79536 1.19394 1.20563 1.19385 0.91100 0.88039 0.91908 0.85612 0.85507 0.85923 0.85672 0.84801 0.77313 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 9.71 36.01 0.35 -1.01 16 2 C 0.10 2.01 6.83 -83.56 -0.57 1.44 16 3 N -0.46 -8.56 10.02 -8.19 -0.08 -8.64 16 4 C 0.04 0.67 7.13 -14.28 -0.10 0.57 16 5 C -0.01 -0.15 5.87 -104.98 -0.62 -0.76 16 6 C -0.11 -1.30 9.57 -39.18 -0.37 -1.68 16 7 C -0.12 -1.17 10.03 -39.64 -0.40 -1.57 16 8 C -0.12 -1.07 10.04 -39.49 -0.40 -1.47 16 9 C -0.12 -1.24 10.03 -39.64 -0.40 -1.63 16 10 C -0.08 -1.01 9.67 -39.18 -0.38 -1.39 16 11 S 0.16 2.91 21.12 -107.50 -2.27 0.64 16 12 C -0.24 -5.03 6.51 -36.72 -0.24 -5.27 16 13 C 0.49 12.28 7.72 -12.96 -0.10 12.18 16 14 O -0.58 -15.65 13.89 5.15 0.07 -15.58 16 15 N -0.53 -13.66 5.27 -12.24 -0.06 -13.72 16 16 C -0.29 -7.67 9.68 -15.02 -0.15 -7.82 16 17 H 0.11 3.11 7.15 -52.49 -0.38 2.74 16 18 C 0.02 0.60 5.50 -17.45 -0.10 0.50 16 19 N -0.88 -22.60 13.05 55.50 0.72 -21.87 16 20 Si 0.94 19.74 29.55 -169.99 -5.02 14.72 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.10 2.02 6.05 -51.93 -0.31 1.70 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.13 1.45 7.22 -52.49 -0.38 1.07 16 28 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 30 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.13 1.72 7.79 -52.48 -0.41 1.31 16 32 H 0.39 9.65 7.07 -40.82 -0.29 9.36 16 33 H 0.28 6.74 8.31 -40.82 -0.34 6.41 16 LS Contribution 306.58 15.07 4.62 4.62 Total: -1.00 -29.60 306.58 -8.50 -38.10 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -3.01 Total: 9.63 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -3.47 Total: -7.90 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.58 Total: -44.24 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.07 Total: -15.58 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -2.27 Total: 0.64 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.60 -8.50 -38.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334418186.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.800 kcal (2) G-P(sol) polarization free energy of solvation -29.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds