Wall clock time and date at job start Tue Mar 31 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30588 * 122.99401 * 2 1 4 4 C 1.30364 * 117.31563 * 180.02562 * 3 2 1 5 5 C 1.47766 * 124.74050 * 179.97438 * 4 3 2 6 6 C 1.39611 * 120.14519 * 180.02562 * 5 4 3 7 7 C 1.37946 * 119.84935 * 179.97438 * 6 5 4 8 8 C 1.38365 * 120.14931 * 359.97438 * 7 6 5 9 9 C 1.38366 * 120.29943 * 0.02562 * 8 7 6 10 10 C 1.37951 * 120.14630 * 0.02562 * 9 8 7 11 11 S 1.70916 * 110.51870 * 0.24440 * 4 3 2 12 12 C 1.37030 * 122.99054 * 180.02562 * 2 1 3 13 13 C 1.46442 * 126.13200 * 0.02865 * 12 2 1 14 14 O 1.21749 * 120.00279 * 0.02562 * 13 12 2 15 15 N 1.34780 * 120.00146 * 180.02562 * 13 12 2 16 16 C 1.36848 * 120.00016 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00199 * 359.97438 * 16 15 13 18 18 C 1.39021 * 120.00172 * 180.02562 * 16 15 13 19 19 N 1.31390 * 119.99730 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00318 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47348 * 59.99615 * 20 18 16 22 22 H 1.48500 * 109.47109 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46873 * 299.99882 * 20 18 16 24 24 H 1.09003 * 109.47154 * 90.01704 * 1 2 3 25 25 H 1.08994 * 109.47060 * 210.02127 * 1 2 3 26 26 H 1.09004 * 109.46916 * 330.01891 * 1 2 3 27 27 H 1.08000 * 120.07405 * 359.95124 * 6 5 4 28 28 H 1.07999 * 119.93067 * 180.02562 * 7 6 5 29 29 H 1.08001 * 119.85340 * 179.72339 * 8 7 6 30 30 H 1.08003 * 119.93192 * 180.02562 * 9 8 7 31 31 H 1.08005 * 120.07588 * 180.02562 * 10 9 8 32 32 H 0.97002 * 119.99838 * 0.02562 * 15 13 12 33 33 H 0.97003 * 119.99746 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2182 1.0953 0.0000 4 6 3.5154 0.9663 -0.0005 5 6 4.4735 2.0913 -0.0011 6 6 5.8472 1.8423 -0.0022 7 6 6.7362 2.8971 -0.0033 8 6 6.2691 4.1995 -0.0039 9 6 4.9090 4.4534 -0.0029 10 6 4.0091 3.4078 -0.0007 11 16 3.9532 -0.6858 -0.0079 12 6 2.2532 -1.1494 -0.0005 13 6 1.7313 -2.5176 -0.0017 14 8 0.5292 -2.7107 -0.0028 15 7 2.5817 -3.5633 -0.0016 16 6 2.0940 -4.8419 -0.0032 17 1 1.0277 -5.0131 -0.0042 18 6 2.9711 -5.9205 -0.0026 19 7 4.2684 -5.7122 -0.0009 20 14 2.3054 -7.6658 -0.0056 21 1 1.4773 -7.8777 -1.2197 22 1 3.4372 -8.6273 -0.0049 23 1 1.4726 -7.8800 1.2052 24 1 -0.3633 -0.0003 -1.0277 25 1 -0.3633 -0.8897 0.5141 26 1 -0.3633 0.8902 0.5136 27 1 6.2131 0.8261 -0.0018 28 1 7.7991 2.7060 -0.0046 29 1 6.9694 5.0218 -0.0003 30 1 4.5509 5.4724 -0.0038 31 1 2.9476 3.6073 -0.0003 32 1 3.5395 -3.4095 -0.0003 33 1 4.8805 -6.4647 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334418186.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:51 Heat of formation + Delta-G solvation = 5.468253 kcal Electronic energy + Delta-G solvation = -19018.950306 eV Core-core repulsion = 15942.148289 eV Total energy + Delta-G solvation = -3076.802017 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.25348 -40.17155 -39.44333 -36.19632 -33.85201 -33.48805 -31.95712 -31.18719 -29.63101 -26.88767 -26.17396 -23.76307 -22.70057 -22.49388 -20.61261 -19.58756 -19.28571 -17.72054 -17.49918 -16.80607 -16.42598 -16.40095 -15.76598 -15.61418 -15.16865 -15.12096 -14.55183 -14.39856 -14.31304 -14.01978 -13.69282 -13.38870 -13.26342 -12.98612 -12.59848 -12.44323 -12.24197 -12.13165 -12.01761 -11.65890 -10.99806 -10.77840 -10.54376 -10.34897 -10.20499 -9.92877 -9.20917 -8.61926 -6.05984 -1.08129 0.10783 0.36956 0.44800 0.54804 1.37792 1.40490 1.52340 1.58854 2.22195 2.23291 2.77958 2.87218 3.03388 3.14369 3.74563 3.98470 4.00670 4.06842 4.25484 4.30126 4.49875 4.55572 4.70253 4.75611 4.84988 4.92138 5.11143 5.27095 5.34316 5.49359 5.49655 5.55273 5.80671 5.98858 6.37168 6.54576 6.92349 7.28357 7.83655 8.54970 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.025807 B = 0.004004 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.703203 B = 6991.384251 C = 8060.939662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.119 3.881 3 N -0.480 5.480 4 C 0.075 3.925 5 C -0.054 4.054 6 C -0.109 4.109 7 C -0.117 4.117 8 C -0.096 4.096 9 C -0.121 4.121 10 C -0.084 4.084 11 S 0.200 5.800 12 C -0.298 4.298 13 C 0.501 3.499 14 O -0.610 6.610 15 N -0.549 5.549 16 C -0.336 4.336 17 H 0.093 0.907 18 C -0.008 4.008 19 N -0.907 5.907 20 Si 1.004 2.996 21 H -0.268 1.268 22 H -0.266 1.266 23 H -0.268 1.268 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.127 0.873 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.155 0.845 31 H 0.127 0.873 32 H 0.394 0.606 33 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.940 17.683 0.015 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.021 4.021 3 N -0.195 5.195 4 C -0.196 4.196 5 C -0.057 4.057 6 C -0.130 4.130 7 C -0.135 4.135 8 C -0.115 4.115 9 C -0.139 4.139 10 C -0.106 4.106 11 S 0.460 5.540 12 C -0.422 4.422 13 C 0.289 3.711 14 O -0.499 6.499 15 N -0.183 5.183 16 C -0.465 4.465 17 H 0.110 0.890 18 C -0.211 4.211 19 N -0.546 5.546 20 Si 0.825 3.175 21 H -0.193 1.193 22 H -0.190 1.190 23 H -0.192 1.192 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.145 0.855 28 H 0.175 0.825 29 H 0.179 0.821 30 H 0.173 0.827 31 H 0.145 0.855 32 H 0.228 0.772 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.108 17.298 0.005 19.104 hybrid contribution -0.894 -1.102 -0.015 1.419 sum 7.214 16.197 -0.011 17.731 Atomic orbital electron populations 1.20486 0.85326 1.03918 1.03576 1.21042 0.99165 0.84645 0.97226 1.66185 1.04173 1.30957 1.18196 1.25651 0.93435 0.97623 1.02939 1.18064 0.91120 0.90449 1.06106 1.21410 0.91149 1.00923 0.99530 1.21412 1.00797 0.92036 0.99224 1.21786 0.95947 0.97587 0.96188 1.21488 0.93338 0.99633 0.99467 1.21416 1.01109 0.90913 0.97158 1.83524 1.04361 1.00380 1.65697 1.26009 0.97165 0.99080 1.19947 1.16688 0.86414 0.82881 0.85131 1.90570 1.15295 1.85061 1.59002 1.41885 1.08533 1.05455 1.62402 1.19860 0.94670 0.82015 1.49985 0.88955 1.26280 0.95133 1.04429 0.95210 1.69657 1.02514 1.35016 1.47416 0.84834 0.78019 0.75259 0.79342 1.19264 1.19044 1.19243 0.90158 0.90244 0.89180 0.85486 0.82499 0.82130 0.82714 0.85478 0.77213 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.70 9.71 71.24 0.69 -2.00 16 2 C 0.12 4.81 6.83 42.46 0.29 5.10 16 3 N -0.48 -17.60 10.02 -179.82 -1.80 -19.40 16 4 C 0.07 2.49 7.13 87.43 0.62 3.11 16 5 C -0.05 -1.43 5.87 -20.10 -0.12 -1.55 16 6 C -0.11 -2.38 9.57 22.53 0.22 -2.16 16 7 C -0.12 -1.79 10.03 22.23 0.22 -1.57 16 8 C -0.10 -1.24 10.04 22.33 0.22 -1.02 16 9 C -0.12 -1.90 10.03 22.23 0.22 -1.67 16 10 C -0.08 -1.92 9.67 22.53 0.22 -1.70 16 11 S 0.20 7.09 21.12 -56.49 -1.19 5.90 16 12 C -0.30 -13.15 6.51 24.12 0.16 -12.99 16 13 C 0.50 26.33 7.72 86.38 0.67 26.99 16 14 O -0.61 -34.82 13.89 -4.50 -0.06 -34.89 16 15 N -0.55 -29.76 5.27 -310.83 -1.64 -31.40 16 16 C -0.34 -19.12 9.68 84.10 0.81 -18.30 16 17 H 0.09 5.47 7.15 -2.91 -0.02 5.45 16 18 C -0.01 -0.44 5.50 84.95 0.47 0.02 16 19 N -0.91 -48.13 13.05 21.68 0.28 -47.85 16 20 Si 1.00 41.59 29.55 68.60 2.03 43.61 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.08 3.29 6.05 -2.39 -0.01 3.27 16 26 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.13 2.66 7.22 -2.91 -0.02 2.64 16 28 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 29 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 30 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 31 H 0.13 3.02 7.79 -2.91 -0.02 3.00 16 32 H 0.39 20.45 7.07 -92.71 -0.66 19.79 16 33 H 0.29 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -67.92 306.58 2.82 -65.10 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.51 Total: 26.67 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 4.70 Total: -7.75 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -3.16 Total: -98.65 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -0.06 Total: -34.89 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 16 Polarization: 7.09 SS G_CDS: -1.19 Total: 5.90 kcal Total: -67.92 2.82 -65.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334418186.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.572 kcal (2) G-P(sol) polarization free energy of solvation -67.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds