Wall clock time and date at job start Tue Mar 31 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28946 * 124.83738 * 2 1 4 4 C 1.31829 * 117.20374 * 179.97438 * 3 2 1 5 5 C 1.34475 * 114.28300 * 359.97438 * 4 3 2 6 6 N 1.39574 * 126.07111 * 179.97438 * 5 4 3 7 7 C 1.34776 * 119.99983 * 179.97438 * 6 5 4 8 8 O 1.21632 * 120.00139 * 0.02562 * 7 6 5 9 9 C 1.47564 * 120.00158 * 179.97438 * 7 6 5 10 10 C 1.40056 * 119.89901 * 180.02562 * 9 7 6 11 11 C 1.36280 * 120.10471 * 179.72764 * 10 9 7 12 12 C 1.40912 * 119.89301 * 0.27610 * 11 10 9 13 13 C 1.41067 * 120.09980 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99877 * 204.66305 * 13 12 11 15 15 C 1.40211 * 120.00306 * 24.65162 * 13 12 11 16 16 N 1.30650 * 119.99838 * 17.89329 * 15 13 12 17 17 Si 1.86798 * 120.00287 * 197.88966 * 15 13 12 18 18 H 1.48505 * 109.47224 * 90.00241 * 17 15 13 19 19 H 1.48503 * 109.47502 * 210.00246 * 17 15 13 20 20 H 1.48503 * 109.47406 * 330.00417 * 17 15 13 21 21 C 1.40912 * 119.80130 * 0.02562 * 12 11 10 22 22 C 1.36291 * 119.89139 * 359.97438 * 21 12 11 23 23 S 1.70951 * 124.83351 * 180.26490 * 2 1 3 24 24 H 1.08998 * 109.47279 * 89.97590 * 1 2 3 25 25 H 1.08996 * 109.47619 * 209.97983 * 1 2 3 26 26 H 1.09002 * 109.47117 * 329.97872 * 1 2 3 27 27 H 1.07992 * 122.85675 * 179.97438 * 4 3 2 28 28 H 0.97004 * 120.00228 * 359.97438 * 6 5 4 29 29 H 1.08002 * 119.94775 * 0.02562 * 10 9 7 30 30 H 1.07997 * 120.05541 * 180.30310 * 11 10 9 31 31 H 0.97000 * 119.99973 * 179.97438 * 16 15 13 32 32 H 1.08000 * 120.05643 * 180.02562 * 21 12 11 33 33 H 1.07993 * 119.94509 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2436 1.0584 0.0000 4 6 3.5502 0.8832 0.0005 5 6 3.9355 -0.4051 0.0015 6 7 5.2518 -0.8692 0.0018 7 6 5.4992 -2.1941 0.0034 8 8 4.5754 -2.9853 0.0041 9 6 6.8909 -2.6848 0.0030 10 6 7.1455 -4.0620 0.0041 11 6 8.4291 -4.5198 -0.0018 12 6 9.5010 -3.6051 -0.0031 13 6 10.8313 -4.0742 -0.0098 14 1 11.6248 -3.4534 0.3794 15 6 11.1236 -5.3465 -0.5213 16 7 10.2637 -5.9523 -1.2963 17 14 12.7423 -6.1755 -0.0949 18 1 12.5746 -6.9834 1.1399 19 1 13.1549 -7.0610 -1.2134 20 1 13.7845 -5.1414 0.1280 21 6 9.2399 -2.2204 0.0022 22 6 7.9530 -1.7718 0.0081 23 16 2.4834 -1.4032 -0.0065 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3634 -0.8901 0.5135 26 1 -0.3633 0.8898 0.5142 27 1 4.2514 1.7045 0.0002 28 1 5.9886 -0.2383 0.0008 29 1 6.3233 -4.7623 0.0048 30 1 8.6245 -5.5820 -0.0059 31 1 10.4661 -6.8324 -1.6506 32 1 10.0583 -1.5157 0.0008 33 1 7.7519 -0.7108 0.0126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334440672.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:42 Heat of formation + Delta-G solvation = 17.798870 kcal Electronic energy + Delta-G solvation = -18887.541108 eV Core-core repulsion = 15811.273787 eV Total energy + Delta-G solvation = -3076.267321 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.94852 -39.04590 -37.36775 -34.73171 -34.07573 -31.50900 -30.32049 -29.71506 -27.50329 -25.85784 -23.71989 -22.42799 -21.18666 -20.41337 -19.84101 -17.83404 -17.62438 -16.99668 -16.12210 -15.46129 -15.17628 -14.72793 -14.21696 -14.17350 -13.99452 -13.42529 -13.22291 -12.92248 -12.64619 -12.43240 -12.32973 -12.06762 -11.60837 -11.37548 -11.22100 -11.14147 -10.86897 -10.71408 -10.25233 -9.71678 -9.63081 -9.49509 -9.10707 -8.83702 -7.95403 -7.87722 -7.67193 -7.18625 -4.77368 0.92667 1.34723 1.99746 2.07707 2.78537 2.86265 2.89040 2.90252 3.00552 3.34491 3.61532 3.65462 4.37757 4.43109 5.16723 5.33621 5.39128 5.45183 5.49077 5.65727 5.80048 5.82631 6.10817 6.16441 6.55732 6.64045 6.69665 6.86059 6.90593 7.25330 7.41250 7.43244 7.68900 7.81516 7.90149 7.96736 8.25628 8.45319 8.53719 8.58770 9.72515 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.055560 B = 0.003070 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.835835 B = 9119.463696 C = 9540.834464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.043 4.043 3 N -0.453 5.453 4 C -0.042 4.042 5 C 0.023 3.977 6 N -0.638 5.638 7 C 0.560 3.440 8 O -0.540 6.540 9 C -0.289 4.289 10 C -0.030 4.030 11 C -0.182 4.182 12 C 0.129 3.871 13 C -0.433 4.433 14 H 0.088 0.912 15 C 0.072 3.928 16 N -0.761 5.761 17 Si 0.917 3.083 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.232 4.232 22 C -0.046 4.046 23 S 0.236 5.764 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.170 0.830 28 H 0.417 0.583 29 H 0.103 0.897 30 H 0.123 0.877 31 H 0.290 0.710 32 H 0.100 0.900 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.805 5.747 1.530 9.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.321 4.321 3 N -0.167 5.167 4 C -0.197 4.197 5 C -0.197 4.197 6 N -0.283 5.283 7 C 0.358 3.642 8 O -0.421 6.421 9 C -0.293 4.293 10 C -0.049 4.049 11 C -0.202 4.202 12 C 0.125 3.875 13 C -0.459 4.459 14 H 0.106 0.894 15 C -0.151 4.151 16 N -0.383 5.383 17 Si 0.740 3.260 18 H -0.187 1.187 19 H -0.198 1.198 20 H -0.182 1.182 21 C -0.251 4.251 22 C -0.065 4.065 23 S 0.485 5.515 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.187 0.813 28 H 0.256 0.744 29 H 0.121 0.879 30 H 0.141 0.859 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.876 4.390 1.359 9.995 hybrid contribution 1.901 0.816 0.017 2.069 sum -6.975 5.206 1.376 8.812 Atomic orbital electron populations 1.20238 0.85910 1.03385 1.03100 1.27172 1.02017 0.94087 1.08819 1.66158 1.03839 1.32228 1.14520 1.21410 0.91798 0.93888 1.12575 1.23887 0.91592 0.96510 1.07671 1.43122 1.03530 1.09107 1.72505 1.19024 0.90942 0.79822 0.74412 1.90604 1.45874 1.53890 1.51713 1.18568 0.88433 0.94612 1.27737 1.20451 0.96663 0.92919 0.94888 1.21015 0.90988 1.00084 1.08076 1.17828 0.93516 0.90967 0.85149 1.19938 0.94228 0.99395 1.32373 0.89410 1.26170 0.99557 0.96930 0.92457 1.69739 1.35488 1.13863 1.19240 0.86150 0.80793 0.79638 0.79426 1.18747 1.19841 1.18167 1.20675 0.94887 0.95499 1.14045 1.20353 0.93216 0.95999 0.96962 1.84918 0.92418 1.05884 1.68274 0.90425 0.90677 0.90113 0.81331 0.74447 0.87915 0.85945 0.89844 0.88162 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.46 36.01 0.38 -0.27 16 2 C -0.04 -0.61 7.38 -13.49 -0.10 -0.71 16 3 N -0.45 -7.02 10.54 -11.68 -0.12 -7.14 16 4 C -0.04 -0.63 11.39 -18.88 -0.22 -0.84 16 5 C 0.02 0.38 7.25 -15.35 -0.11 0.27 16 6 N -0.64 -10.60 5.37 -11.55 -0.06 -10.66 16 7 C 0.56 11.31 7.73 -12.46 -0.10 11.22 16 8 O -0.54 -11.89 13.94 5.25 0.07 -11.81 16 9 C -0.29 -6.21 5.89 -104.73 -0.62 -6.82 16 10 C -0.03 -0.69 9.52 -39.61 -0.38 -1.06 16 11 C -0.18 -4.41 8.63 -39.27 -0.34 -4.75 16 12 C 0.13 3.10 5.58 -106.80 -0.60 2.51 16 13 C -0.43 -10.17 9.04 -37.77 -0.34 -10.51 16 14 H 0.09 1.95 7.91 -52.48 -0.42 1.53 16 15 C 0.07 1.60 5.13 -17.31 -0.09 1.51 16 16 N -0.76 -17.67 10.95 55.56 0.61 -17.06 16 17 Si 0.92 16.49 29.60 -169.99 -5.03 11.46 16 18 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 19 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 20 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 21 C -0.23 -5.04 9.73 -39.27 -0.38 -5.42 16 22 C -0.05 -0.92 9.47 -39.60 -0.38 -1.29 16 23 S 0.24 3.69 20.41 -107.50 -2.19 1.49 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.17 2.07 8.06 -52.49 -0.42 1.64 16 28 H 0.42 5.76 6.82 -40.82 -0.28 5.48 16 29 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 30 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 31 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 32 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.09 1.43 6.37 -52.49 -0.33 1.09 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -27.45 303.07 -8.42 -35.87 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -3.00 Total: 9.47 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -3.26 Total: -16.18 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.42 Total: -34.87 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.07 Total: -11.81 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.03 Total: 11.46 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -2.19 Total: 1.49 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.45 -8.42 -35.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334440672.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.672 kcal (2) G-P(sol) polarization free energy of solvation -27.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds