Wall clock time and date at job start Tue Mar 31 2020 05:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28946 * 124.83738 * 2 1 4 4 C 1.31829 * 117.20374 * 179.97438 * 3 2 1 5 5 C 1.34475 * 114.28300 * 359.97438 * 4 3 2 6 6 N 1.39574 * 126.07111 * 179.97438 * 5 4 3 7 7 C 1.34776 * 119.99983 * 179.97438 * 6 5 4 8 8 O 1.21632 * 120.00139 * 0.02562 * 7 6 5 9 9 C 1.47564 * 120.00158 * 179.97438 * 7 6 5 10 10 C 1.40056 * 119.89901 * 180.02562 * 9 7 6 11 11 C 1.36280 * 120.10471 * 179.72764 * 10 9 7 12 12 C 1.40912 * 119.89301 * 0.27610 * 11 10 9 13 13 C 1.41067 * 120.09980 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99877 * 204.66305 * 13 12 11 15 15 C 1.40211 * 120.00306 * 24.65162 * 13 12 11 16 16 N 1.30650 * 119.99838 * 17.89329 * 15 13 12 17 17 Si 1.86798 * 120.00287 * 197.88966 * 15 13 12 18 18 H 1.48505 * 109.47224 * 90.00241 * 17 15 13 19 19 H 1.48503 * 109.47502 * 210.00246 * 17 15 13 20 20 H 1.48503 * 109.47406 * 330.00417 * 17 15 13 21 21 C 1.40912 * 119.80130 * 0.02562 * 12 11 10 22 22 C 1.36291 * 119.89139 * 359.97438 * 21 12 11 23 23 S 1.70951 * 124.83351 * 180.26490 * 2 1 3 24 24 H 1.08998 * 109.47279 * 89.97590 * 1 2 3 25 25 H 1.08996 * 109.47619 * 209.97983 * 1 2 3 26 26 H 1.09002 * 109.47117 * 329.97872 * 1 2 3 27 27 H 1.07992 * 122.85675 * 179.97438 * 4 3 2 28 28 H 0.97004 * 120.00228 * 359.97438 * 6 5 4 29 29 H 1.08002 * 119.94775 * 0.02562 * 10 9 7 30 30 H 1.07997 * 120.05541 * 180.30310 * 11 10 9 31 31 H 0.97000 * 119.99973 * 179.97438 * 16 15 13 32 32 H 1.08000 * 120.05643 * 180.02562 * 21 12 11 33 33 H 1.07993 * 119.94509 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2436 1.0584 0.0000 4 6 3.5502 0.8832 0.0005 5 6 3.9355 -0.4051 0.0015 6 7 5.2518 -0.8692 0.0018 7 6 5.4992 -2.1941 0.0034 8 8 4.5754 -2.9853 0.0041 9 6 6.8909 -2.6848 0.0030 10 6 7.1455 -4.0620 0.0041 11 6 8.4291 -4.5198 -0.0018 12 6 9.5010 -3.6051 -0.0031 13 6 10.8313 -4.0742 -0.0098 14 1 11.6248 -3.4534 0.3794 15 6 11.1236 -5.3465 -0.5213 16 7 10.2637 -5.9523 -1.2963 17 14 12.7423 -6.1755 -0.0949 18 1 12.5746 -6.9834 1.1399 19 1 13.1549 -7.0610 -1.2134 20 1 13.7845 -5.1414 0.1280 21 6 9.2399 -2.2204 0.0022 22 6 7.9530 -1.7718 0.0081 23 16 2.4834 -1.4032 -0.0065 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3634 -0.8901 0.5135 26 1 -0.3633 0.8898 0.5142 27 1 4.2514 1.7045 0.0002 28 1 5.9886 -0.2383 0.0008 29 1 6.3233 -4.7623 0.0048 30 1 8.6245 -5.5820 -0.0059 31 1 10.4661 -6.8324 -1.6506 32 1 10.0583 -1.5157 0.0008 33 1 7.7519 -0.7108 0.0126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334440672.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:41 Heat of formation + Delta-G solvation = 2.152110 kcal Electronic energy + Delta-G solvation = -18888.219603 eV Core-core repulsion = 15811.273787 eV Total energy + Delta-G solvation = -3076.945816 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.37107 -40.35773 -39.04039 -36.15088 -35.75277 -32.66622 -31.93470 -31.38147 -28.82729 -27.40395 -24.87729 -24.01454 -22.88001 -21.89692 -21.16412 -19.44964 -19.10079 -18.29436 -17.53404 -17.04729 -16.49806 -16.20437 -15.79922 -15.47884 -15.22666 -15.11236 -14.56147 -14.24125 -14.03549 -13.75964 -13.60388 -13.31284 -13.15377 -12.88187 -12.70316 -12.42939 -12.42140 -12.06816 -11.82118 -11.41110 -11.18441 -11.12330 -10.38915 -10.06865 -9.63611 -9.55634 -9.03307 -8.84593 -6.54003 -0.30730 0.17248 0.37832 0.90130 1.11997 1.36132 1.40702 1.52814 1.75192 1.98673 2.09476 2.14225 2.70743 3.41320 3.63226 4.04361 4.12704 4.25081 4.34232 4.36495 4.68770 4.74335 4.88349 4.93330 4.96843 5.12143 5.14634 5.19537 5.37875 5.52998 5.71054 5.83085 5.95863 6.14139 6.30382 6.50468 6.70708 6.79606 6.82662 7.03864 8.09537 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.055560 B = 0.003070 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.835835 B = 9119.463696 C = 9540.834464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.018 4.018 3 N -0.476 5.476 4 C -0.023 4.023 5 C -0.010 4.010 6 N -0.623 5.623 7 C 0.563 3.437 8 O -0.565 6.565 9 C -0.295 4.295 10 C -0.042 4.042 11 C -0.203 4.203 12 C 0.102 3.898 13 C -0.462 4.462 14 H 0.095 0.905 15 C 0.034 3.966 16 N -0.796 5.796 17 Si 0.989 3.011 18 H -0.262 1.262 19 H -0.267 1.267 20 H -0.251 1.251 21 C -0.244 4.244 22 C -0.036 4.036 23 S 0.200 5.800 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.197 0.803 28 H 0.430 0.570 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.297 0.703 32 H 0.119 0.881 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 7.680 1.733 11.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.296 4.296 3 N -0.191 5.191 4 C -0.178 4.178 5 C -0.228 4.228 6 N -0.269 5.269 7 C 0.359 3.641 8 O -0.448 6.448 9 C -0.300 4.300 10 C -0.062 4.062 11 C -0.222 4.222 12 C 0.099 3.901 13 C -0.489 4.489 14 H 0.113 0.887 15 C -0.186 4.186 16 N -0.419 5.419 17 Si 0.809 3.191 18 H -0.186 1.186 19 H -0.192 1.192 20 H -0.174 1.174 21 C -0.263 4.263 22 C -0.054 4.054 23 S 0.450 5.550 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.213 0.787 28 H 0.271 0.729 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.281 6.366 1.561 11.362 hybrid contribution 1.766 0.355 -0.056 1.802 sum -7.515 6.721 1.505 10.194 Atomic orbital electron populations 1.20495 0.82886 1.04921 1.04731 1.27874 1.03600 0.92648 1.05500 1.66293 1.04139 1.32482 1.16162 1.21861 0.92160 0.94040 1.09703 1.23945 0.91126 0.97015 1.10743 1.42698 1.04405 1.07920 1.71905 1.18768 0.90009 0.80964 0.74406 1.90598 1.46348 1.55077 1.52768 1.18794 0.89976 0.94207 1.27033 1.20527 0.96111 0.94147 0.95393 1.20944 0.91775 0.99572 1.09932 1.18186 0.93860 0.92247 0.85839 1.20235 0.94342 1.00743 1.33534 0.88690 1.27040 1.02934 0.96994 0.91653 1.69788 1.37463 1.14536 1.20139 0.85075 0.76436 0.78536 0.79072 1.18615 1.19154 1.17393 1.20944 0.96349 0.94874 1.14149 1.20709 0.91926 0.98054 0.94747 1.85050 0.93477 1.07675 1.68768 0.88595 0.88813 0.88864 0.78676 0.72899 0.88563 0.87598 0.89137 0.86330 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.46 71.24 0.75 -0.41 16 2 C -0.02 -0.47 7.38 88.53 0.65 0.18 16 3 N -0.48 -13.47 10.54 -190.88 -2.01 -15.48 16 4 C -0.02 -0.64 11.39 83.83 0.96 0.32 16 5 C -0.01 -0.30 7.25 82.60 0.60 0.30 16 6 N -0.62 -19.67 5.37 -308.71 -1.66 -21.33 16 7 C 0.56 22.46 7.73 86.70 0.67 23.13 16 8 O -0.57 -25.15 13.94 -4.13 -0.06 -25.21 16 9 C -0.30 -12.68 5.89 -19.93 -0.12 -12.80 16 10 C -0.04 -2.03 9.52 22.25 0.21 -1.82 16 11 C -0.20 -10.26 8.63 22.47 0.19 -10.07 16 12 C 0.10 5.03 5.58 -21.28 -0.12 4.91 16 13 C -0.46 -22.10 9.04 23.44 0.21 -21.89 16 14 H 0.10 4.23 7.91 -2.91 -0.02 4.21 16 15 C 0.03 1.51 5.13 85.35 0.44 1.95 16 16 N -0.80 -38.16 10.95 21.87 0.24 -37.92 16 17 Si 0.99 33.77 29.60 68.60 2.03 35.80 16 18 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 19 H -0.27 -8.74 7.11 99.48 0.71 -8.03 16 20 H -0.25 -8.18 7.11 99.48 0.71 -7.47 16 21 C -0.24 -10.47 9.73 22.47 0.22 -10.25 16 22 C -0.04 -1.37 9.47 22.26 0.21 -1.16 16 23 S 0.20 6.06 20.41 -56.49 -1.15 4.91 16 24 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 25 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.20 4.08 8.06 -2.91 -0.02 4.05 16 28 H 0.43 10.70 6.82 -92.71 -0.63 10.07 16 29 H 0.10 4.60 7.63 -2.91 -0.02 4.57 16 30 H 0.11 5.58 6.16 -2.91 -0.02 5.56 16 31 H 0.30 12.75 8.29 -92.71 -0.77 11.99 16 32 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 33 H 0.14 3.84 6.37 -2.91 -0.02 3.83 16 Total: -1.00 -60.59 303.07 2.79 -57.79 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.53 Total: 29.05 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 4.87 Total: -27.61 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -3.43 Total: -74.73 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.06 Total: -25.21 kcal Atomic # 14 Polarization: 33.77 SS G_CDS: 2.03 Total: 35.80 kcal Atomic # 16 Polarization: 6.06 SS G_CDS: -1.15 Total: 4.91 kcal Total: -60.59 2.79 -57.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334440672.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.946 kcal (2) G-P(sol) polarization free energy of solvation -60.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds