Wall clock time and date at job start Tue Mar 31 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34993 * 127.27418 * 2 1 4 4 C 1.39511 * 111.68970 * 179.97438 * 3 2 1 5 5 C 1.47638 * 122.10978 * 180.02562 * 4 3 2 6 6 O 1.21586 * 119.99758 * 359.97438 * 5 4 3 7 7 N 1.34770 * 119.99630 * 180.02562 * 5 4 3 8 8 C 1.39020 * 119.99927 * 175.27538 * 7 5 4 9 9 C 1.38678 * 120.28652 * 34.24721 * 8 7 5 10 10 C 1.38204 * 120.03282 * 179.97438 * 9 8 7 11 11 C 1.38884 * 120.61812 * 0.02767 * 10 9 8 12 12 C 1.36459 * 120.58389 * 359.97438 * 11 10 9 13 13 C 1.40743 * 119.94369 * 359.69930 * 12 11 10 14 14 C 1.41050 * 120.30200 * 180.29793 * 13 12 11 15 15 H 1.08008 * 119.99993 * 148.81127 * 14 13 12 16 16 C 1.39961 * 120.00542 * 328.81252 * 14 13 12 17 17 N 1.30851 * 120.00212 * 167.54758 * 16 14 13 18 18 Si 1.86798 * 119.99728 * 347.55321 * 16 14 13 19 19 H 1.48508 * 109.47347 * 92.50348 * 18 16 14 20 20 H 1.48498 * 109.47302 * 212.50714 * 18 16 14 21 21 H 1.48507 * 109.47128 * 332.50499 * 18 16 14 22 22 N 1.30623 * 115.77780 * 0.02562 * 4 3 2 23 23 S 1.56149 * 109.80085 * 359.97438 * 22 4 3 24 24 H 1.08997 * 109.47292 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47037 * 300.00243 * 1 2 3 26 26 H 1.09005 * 109.47130 * 59.99669 * 1 2 3 27 27 H 1.08010 * 124.15411 * 359.95482 * 3 2 1 28 28 H 0.97000 * 120.00496 * 355.27146 * 7 5 4 29 29 H 1.08004 * 119.98377 * 0.02562 * 9 8 7 30 30 H 1.07995 * 119.69001 * 180.02562 * 10 9 8 31 31 H 1.07990 * 119.70879 * 179.97438 * 11 10 9 32 32 H 1.07991 * 120.02781 * 179.97438 * 12 11 10 33 33 H 0.96999 * 119.99689 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3245 1.0742 0.0000 4 6 3.6683 0.6994 0.0006 5 6 4.7602 1.6931 0.0013 6 8 4.5010 2.8810 0.0009 7 7 6.0441 1.2834 0.0013 8 6 7.0711 2.2152 -0.0972 9 6 6.9378 3.4671 0.4843 10 6 7.9622 4.3893 0.3836 11 6 9.1312 4.0762 -0.2978 12 6 9.2892 2.8520 -0.8795 13 6 8.2641 1.8922 -0.7859 14 6 8.4219 0.6222 -1.3791 15 1 7.9495 -0.2427 -0.9371 16 6 9.1908 0.4827 -2.5402 17 7 9.5411 -0.7082 -2.9539 18 14 9.7169 1.9968 -3.4995 19 1 11.0539 2.4406 -3.0297 20 1 9.7845 1.6677 -4.9459 21 1 8.7303 3.0860 -3.2853 22 7 3.8995 -0.5862 0.0005 23 16 2.5471 -1.3668 0.0004 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.9805 2.0981 -0.0007 28 1 6.2517 0.3384 0.0701 29 1 6.0332 3.7213 1.0169 30 1 7.8527 5.3624 0.8389 31 1 9.9222 4.8081 -0.3678 32 1 10.2018 2.6183 -1.4075 33 1 10.0736 -0.8048 -3.7588 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334589304.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:05 Heat of formation + Delta-G solvation = 26.835884 kcal Electronic energy + Delta-G solvation = -19597.328298 eV Core-core repulsion = 16521.452852 eV Total energy + Delta-G solvation = -3075.875447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.31891 -38.70508 -37.15653 -34.07935 -33.62524 -33.19346 -30.46055 -28.91999 -28.23669 -25.76967 -24.72927 -22.16759 -21.01305 -20.17831 -19.58687 -18.10524 -17.47557 -17.29808 -16.31974 -15.38401 -15.19350 -14.56201 -14.18520 -14.07188 -13.73660 -13.47035 -13.20340 -13.05526 -12.96600 -12.72029 -12.40842 -12.10036 -11.69689 -11.25919 -11.00696 -10.88150 -10.87664 -10.45338 -10.03095 -9.84241 -9.51317 -9.47790 -9.38483 -8.91871 -8.76244 -7.64930 -7.14722 -6.96688 -4.50072 0.61656 1.40338 1.82415 1.86213 2.53744 2.67768 3.09549 3.19688 3.32248 3.60851 3.80618 3.96972 4.52834 4.59570 4.93999 5.16614 5.26399 5.27051 5.36971 5.57826 5.73844 5.83153 6.06608 6.13987 6.32331 6.40403 6.63031 6.73354 6.96044 7.15549 7.36653 7.47351 7.67396 7.80339 7.97005 8.21316 8.26907 8.55521 8.70065 8.83870 10.05331 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.005033 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.566807 B = 5562.456050 C = 6562.326113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.254 4.254 3 C -0.141 4.141 4 C 0.065 3.935 5 C 0.574 3.426 6 O -0.531 6.531 7 N -0.614 5.614 8 C 0.025 3.975 9 C -0.074 4.074 10 C -0.228 4.228 11 C -0.084 4.084 12 C -0.226 4.226 13 C 0.087 3.913 14 C -0.447 4.447 15 H 0.090 0.910 16 C 0.085 3.915 17 N -0.810 5.810 18 Si 0.913 3.087 19 H -0.270 1.270 20 H -0.293 1.293 21 H -0.243 1.243 22 N -0.515 5.515 23 S 0.451 5.549 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.170 0.830 28 H 0.413 0.587 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.951 -1.537 3.981 14.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.384 4.384 3 C -0.173 4.173 4 C -0.110 4.110 5 C 0.356 3.644 6 O -0.408 6.408 7 N -0.256 5.256 8 C -0.069 4.069 9 C -0.094 4.094 10 C -0.248 4.248 11 C -0.103 4.103 12 C -0.246 4.246 13 C 0.083 3.917 14 C -0.476 4.476 15 H 0.107 0.893 16 C -0.134 4.134 17 N -0.435 5.435 18 Si 0.741 3.259 19 H -0.196 1.196 20 H -0.221 1.221 21 H -0.166 1.166 22 N -0.349 5.349 23 S 0.606 5.394 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.187 0.813 28 H 0.250 0.750 29 H 0.135 0.865 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.271 -2.969 3.800 14.120 hybrid contribution 0.175 1.898 -0.592 1.996 sum -13.097 -1.071 3.208 13.526 Atomic orbital electron populations 1.20170 0.86260 1.03118 1.03401 1.26070 1.03155 1.00292 1.08918 1.21227 0.90317 1.01891 1.03907 1.21206 0.95095 0.89224 1.05432 1.17214 0.81947 0.86753 0.78501 1.90742 1.83245 1.15778 1.51011 1.42685 1.03723 1.11083 1.68088 1.17592 0.88927 0.91131 1.09280 1.20813 0.98193 0.92883 0.97553 1.20321 0.95713 0.99381 1.09384 1.20392 0.96554 0.95834 0.97514 1.20631 0.99076 0.96030 1.08878 1.17542 0.89748 0.93480 0.90951 1.19243 1.26420 0.93676 1.08211 0.89255 1.26090 0.92255 0.97560 0.97488 1.69655 1.27652 1.24501 1.21677 0.86298 0.80450 0.82374 0.76814 1.19586 1.22059 1.16582 1.72355 1.28460 1.10768 1.23304 1.80406 0.87880 1.12737 1.58407 0.90982 0.90279 0.90256 0.81257 0.74967 0.86508 0.88422 0.88700 0.87809 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.46 36.00 0.38 -0.11 16 2 C -0.25 -2.78 6.58 -35.46 -0.23 -3.01 16 3 C -0.14 -1.98 9.92 -40.26 -0.40 -2.38 16 4 C 0.07 1.13 6.66 -84.07 -0.56 0.57 16 5 C 0.57 11.92 7.65 -12.43 -0.10 11.82 16 6 O -0.53 -11.93 14.03 5.29 0.07 -11.85 16 7 N -0.61 -13.57 5.02 -10.39 -0.05 -13.62 16 8 C 0.02 0.60 6.34 -83.20 -0.53 0.07 16 9 C -0.07 -1.72 8.69 -39.43 -0.34 -2.06 16 10 C -0.23 -4.99 10.04 -39.35 -0.39 -5.39 16 11 C -0.08 -1.87 9.97 -39.98 -0.40 -2.26 16 12 C -0.23 -5.51 6.95 -39.28 -0.27 -5.78 16 13 C 0.09 2.23 5.15 -106.65 -0.55 1.68 16 14 C -0.45 -11.91 9.13 -37.87 -0.35 -12.25 16 15 H 0.09 2.45 7.08 -52.48 -0.37 2.07 16 16 C 0.08 2.22 5.47 -17.32 -0.09 2.12 16 17 N -0.81 -21.50 13.93 55.55 0.77 -20.73 16 18 Si 0.91 21.16 24.40 -169.99 -4.15 17.01 16 19 H -0.27 -5.99 6.66 56.52 0.38 -5.61 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.24 -5.87 6.69 56.52 0.38 -5.49 16 22 N -0.52 -8.42 10.71 24.86 0.27 -8.15 16 23 S 0.45 5.21 23.20 -107.50 -2.49 2.72 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.17 2.24 7.99 -52.48 -0.42 1.82 16 28 H 0.41 8.84 7.05 -40.82 -0.29 8.55 16 29 H 0.12 2.65 6.15 -52.48 -0.32 2.32 16 30 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 32 H 0.10 2.48 4.41 -52.49 -0.23 2.25 16 33 H 0.29 6.91 8.30 -40.82 -0.34 6.57 16 LS Contribution 296.29 15.07 4.47 4.47 Total: -1.00 -30.05 296.29 -7.88 -37.93 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -2.93 Total: 9.23 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -3.84 Total: -17.00 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.99 Total: -42.50 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.07 Total: -11.85 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.15 Total: 17.01 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -2.49 Total: 2.72 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.05 -7.88 -37.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334589304.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.765 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds