Wall clock time and date at job start Tue Mar 31 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34993 * 127.27418 * 2 1 4 4 C 1.39511 * 111.68970 * 179.97438 * 3 2 1 5 5 C 1.47638 * 122.10978 * 180.02562 * 4 3 2 6 6 O 1.21586 * 119.99758 * 359.97438 * 5 4 3 7 7 N 1.34770 * 119.99630 * 180.02562 * 5 4 3 8 8 C 1.39020 * 119.99927 * 175.27538 * 7 5 4 9 9 C 1.38678 * 120.28652 * 34.24721 * 8 7 5 10 10 C 1.38204 * 120.03282 * 179.97438 * 9 8 7 11 11 C 1.38884 * 120.61812 * 0.02767 * 10 9 8 12 12 C 1.36459 * 120.58389 * 359.97438 * 11 10 9 13 13 C 1.40743 * 119.94369 * 359.69930 * 12 11 10 14 14 C 1.41050 * 120.30200 * 180.29793 * 13 12 11 15 15 H 1.08008 * 119.99993 * 148.81127 * 14 13 12 16 16 C 1.39961 * 120.00542 * 328.81252 * 14 13 12 17 17 N 1.30851 * 120.00212 * 167.54758 * 16 14 13 18 18 Si 1.86798 * 119.99728 * 347.55321 * 16 14 13 19 19 H 1.48508 * 109.47347 * 92.50348 * 18 16 14 20 20 H 1.48498 * 109.47302 * 212.50714 * 18 16 14 21 21 H 1.48507 * 109.47128 * 332.50499 * 18 16 14 22 22 N 1.30623 * 115.77780 * 0.02562 * 4 3 2 23 23 S 1.56149 * 109.80085 * 359.97438 * 22 4 3 24 24 H 1.08997 * 109.47292 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47037 * 300.00243 * 1 2 3 26 26 H 1.09005 * 109.47130 * 59.99669 * 1 2 3 27 27 H 1.08010 * 124.15411 * 359.95482 * 3 2 1 28 28 H 0.97000 * 120.00496 * 355.27146 * 7 5 4 29 29 H 1.08004 * 119.98377 * 0.02562 * 9 8 7 30 30 H 1.07995 * 119.69001 * 180.02562 * 10 9 8 31 31 H 1.07990 * 119.70879 * 179.97438 * 11 10 9 32 32 H 1.07991 * 120.02781 * 179.97438 * 12 11 10 33 33 H 0.96999 * 119.99689 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3245 1.0742 0.0000 4 6 3.6683 0.6994 0.0006 5 6 4.7602 1.6931 0.0013 6 8 4.5010 2.8810 0.0009 7 7 6.0441 1.2834 0.0013 8 6 7.0711 2.2152 -0.0972 9 6 6.9378 3.4671 0.4843 10 6 7.9622 4.3893 0.3836 11 6 9.1312 4.0762 -0.2978 12 6 9.2892 2.8520 -0.8795 13 6 8.2641 1.8922 -0.7859 14 6 8.4219 0.6222 -1.3791 15 1 7.9495 -0.2427 -0.9371 16 6 9.1908 0.4827 -2.5402 17 7 9.5411 -0.7082 -2.9539 18 14 9.7169 1.9968 -3.4995 19 1 11.0539 2.4406 -3.0297 20 1 9.7845 1.6677 -4.9459 21 1 8.7303 3.0860 -3.2853 22 7 3.8995 -0.5862 0.0005 23 16 2.5471 -1.3668 0.0004 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.9805 2.0981 -0.0007 28 1 6.2517 0.3384 0.0701 29 1 6.0332 3.7213 1.0169 30 1 7.8527 5.3624 0.8389 31 1 9.9222 4.8081 -0.3678 32 1 10.2018 2.6183 -1.4075 33 1 10.0736 -0.8048 -3.7588 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334589304.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:04 Heat of formation + Delta-G solvation = 7.431396 kcal Electronic energy + Delta-G solvation = -19598.169740 eV Core-core repulsion = 16521.452852 eV Total energy + Delta-G solvation = -3076.716889 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.78248 -40.18940 -38.83335 -35.73349 -35.54653 -34.18489 -32.35529 -30.66565 -29.17447 -27.36843 -26.31858 -23.87182 -22.56791 -21.58413 -21.05049 -19.41867 -19.25127 -18.88260 -17.87372 -17.02117 -16.71124 -16.06090 -15.82593 -15.62416 -15.19950 -14.99957 -14.66450 -14.31834 -14.02382 -13.95586 -13.78337 -13.50142 -13.47311 -12.96799 -12.76507 -12.35599 -12.13674 -11.85629 -11.85226 -11.72599 -11.26414 -11.13125 -10.67008 -10.48538 -9.82723 -9.53273 -8.95760 -8.90754 -6.49007 -0.51070 0.43986 0.47757 0.75402 0.76541 0.91626 1.23608 1.37090 1.46332 2.08886 2.09270 2.27508 2.61740 3.41841 3.59008 3.80376 4.19373 4.26194 4.30128 4.40804 4.61728 4.70200 4.76982 4.79458 4.87525 4.92503 5.15567 5.19099 5.28009 5.28782 5.58107 5.64397 5.87644 5.95253 6.06258 6.32616 6.46440 6.72644 6.75155 7.12107 8.16453 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.005033 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.566807 B = 5562.456050 C = 6562.326113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.230 4.230 3 C -0.161 4.161 4 C 0.037 3.963 5 C 0.572 3.428 6 O -0.554 6.554 7 N -0.624 5.624 8 C 0.017 3.983 9 C -0.090 4.090 10 C -0.212 4.212 11 C -0.088 4.088 12 C -0.237 4.237 13 C 0.064 3.936 14 C -0.473 4.473 15 H 0.062 0.938 16 C 0.050 3.950 17 N -0.848 5.848 18 Si 0.963 3.037 19 H -0.251 1.251 20 H -0.282 1.282 21 H -0.260 1.260 22 N -0.564 5.564 23 S 0.527 5.473 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.173 0.827 28 H 0.412 0.588 29 H 0.120 0.880 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.107 0.893 33 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.611 -0.554 4.215 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.361 4.361 3 C -0.192 4.192 4 C -0.135 4.135 5 C 0.356 3.644 6 O -0.433 6.433 7 N -0.265 5.265 8 C -0.078 4.078 9 C -0.110 4.110 10 C -0.232 4.232 11 C -0.106 4.106 12 C -0.256 4.256 13 C 0.060 3.940 14 C -0.503 4.503 15 H 0.081 0.919 16 C -0.165 4.165 17 N -0.475 5.475 18 Si 0.787 3.213 19 H -0.176 1.176 20 H -0.209 1.209 21 H -0.184 1.184 22 N -0.400 5.400 23 S 0.682 5.318 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.190 0.810 28 H 0.249 0.751 29 H 0.137 0.863 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.124 0.876 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.934 -1.981 4.044 15.598 hybrid contribution 0.462 1.563 -0.516 1.710 sum -14.472 -0.418 3.527 14.901 Atomic orbital electron populations 1.20435 0.82832 1.05260 1.04710 1.26590 1.05096 0.98877 1.05560 1.21245 0.89350 1.03038 1.05610 1.20893 0.94961 0.88928 1.08717 1.17768 0.82155 0.87405 0.77027 1.90690 1.83716 1.17014 1.51912 1.42769 1.04175 1.10752 1.68821 1.17917 0.89262 0.91988 1.08606 1.21027 0.99021 0.92911 0.98034 1.20801 0.94666 1.00245 1.07466 1.20790 0.97665 0.95722 0.96422 1.20834 0.98831 0.96753 1.09230 1.17721 0.90856 0.93630 0.91775 1.19196 1.28013 0.93593 1.09537 0.91940 1.26691 0.92241 0.99730 0.97817 1.69679 1.29282 1.25734 1.22778 0.85548 0.80359 0.79035 0.76324 1.17579 1.20866 1.18382 1.72006 1.32632 1.10909 1.24493 1.80038 0.85469 1.11003 1.55267 0.88466 0.88682 0.88979 0.80975 0.75118 0.86264 0.84893 0.84801 0.87580 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.46 71.23 0.75 0.02 16 2 C -0.23 -4.47 6.58 24.94 0.16 -4.30 16 3 C -0.16 -4.40 9.92 21.83 0.22 -4.18 16 4 C 0.04 1.31 6.66 42.11 0.28 1.59 16 5 C 0.57 24.71 7.65 86.73 0.66 25.38 16 6 O -0.55 -25.60 14.03 -3.99 -0.06 -25.66 16 7 N -0.62 -28.98 5.02 -305.05 -1.53 -30.51 16 8 C 0.02 0.82 6.34 38.91 0.25 1.07 16 9 C -0.09 -4.14 8.69 22.37 0.19 -3.94 16 10 C -0.21 -8.79 10.04 22.42 0.22 -8.56 16 11 C -0.09 -3.66 9.97 22.01 0.22 -3.44 16 12 C -0.24 -11.37 6.95 22.47 0.16 -11.21 16 13 C 0.06 3.36 5.15 -21.18 -0.11 3.25 16 14 C -0.47 -26.51 9.13 23.38 0.21 -26.30 16 15 H 0.06 3.69 7.08 -2.91 -0.02 3.67 16 16 C 0.05 2.68 5.47 85.26 0.47 3.14 16 17 N -0.85 -46.56 13.93 21.83 0.30 -46.25 16 18 Si 0.96 43.77 24.40 68.60 1.67 45.44 16 19 H -0.25 -10.52 6.66 99.48 0.66 -9.86 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.26 -12.40 6.69 99.48 0.67 -11.73 16 22 N -0.56 -18.67 10.71 -75.25 -0.81 -19.48 16 23 S 0.53 11.22 23.20 -56.49 -1.31 9.91 16 24 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.17 4.48 7.99 -2.91 -0.02 4.46 16 28 H 0.41 18.97 7.05 -92.71 -0.65 18.32 16 29 H 0.12 5.41 6.15 -2.91 -0.02 5.39 16 30 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 31 H 0.13 4.53 8.06 -2.92 -0.02 4.51 16 32 H 0.11 4.97 4.41 -2.92 -0.01 4.96 16 33 H 0.29 14.54 8.30 -92.71 -0.77 13.77 16 Total: -1.00 -67.81 296.29 2.39 -65.42 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.43 Total: 28.61 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 3.68 Total: -27.48 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -2.03 Total: -96.24 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.06 Total: -25.66 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.67 Total: 45.44 kcal Atomic # 16 Polarization: 11.22 SS G_CDS: -1.31 Total: 9.91 kcal Total: -67.81 2.39 -65.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334589304.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.849 kcal (2) G-P(sol) polarization free energy of solvation -67.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds