Wall clock time and date at job start Tue Mar 31 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32774 * 123.45616 * 2 1 4 4 S 1.75499 * 110.57871 * 180.22489 * 3 2 1 5 5 C 1.70442 * 92.45135 * 359.73635 * 4 3 2 6 6 C 1.36039 * 110.81428 * 359.97438 * 5 4 3 7 7 C 1.47155 * 123.46420 * 179.97438 * 6 5 4 8 8 O 1.21635 * 119.99829 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99915 * 0.02869 * 7 6 5 10 10 C 1.39383 * 119.99765 * 174.90892 * 9 7 6 11 11 C 1.38661 * 119.64855 * 174.64954 * 10 9 7 12 12 C 1.40818 * 118.67235 * 179.97438 * 11 10 9 13 13 C 1.41544 * 120.99941 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00351 * 206.23604 * 13 12 11 15 15 C 1.40031 * 119.99619 * 26.23516 * 13 12 11 16 16 N 1.30733 * 120.00171 * 9.84152 * 15 13 12 17 17 Si 1.86808 * 119.99871 * 189.83828 * 15 13 12 18 18 H 1.48500 * 109.47025 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46848 * 119.99870 * 17 15 13 20 20 H 1.48497 * 109.47181 * 240.00207 * 17 15 13 21 21 C 1.41169 * 118.00615 * 359.97438 * 12 11 10 22 22 C 1.36594 * 119.13073 * 0.02562 * 21 12 11 23 23 N 1.32062 * 121.25896 * 359.97034 * 22 21 12 24 24 H 1.08998 * 109.47356 * 270.23462 * 1 2 3 25 25 H 1.08994 * 109.47041 * 30.24341 * 1 2 3 26 26 H 1.09006 * 109.46681 * 150.23851 * 1 2 3 27 27 H 1.07996 * 124.70794 * 359.96075 * 3 2 1 28 28 H 1.08005 * 124.59597 * 179.97438 * 5 4 3 29 29 H 0.96995 * 120.00292 * 354.90593 * 9 7 6 30 30 H 1.07996 * 120.66416 * 0.02562 * 11 10 9 31 31 H 0.97010 * 120.00291 * 179.97438 * 16 15 13 32 32 H 1.08006 * 120.43243 * 180.02562 * 21 12 11 33 33 H 1.07996 * 119.36970 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7166 -0.0064 5 6 3.6414 -0.9597 -0.0012 6 6 2.3033 -1.2050 0.0057 7 6 1.7266 -2.5588 0.0109 8 8 0.5191 -2.7054 0.0165 9 7 2.5363 -3.6362 0.0095 10 6 1.9942 -4.9154 0.1215 11 6 2.8207 -6.0230 0.0077 12 6 2.2514 -7.3056 0.1248 13 6 3.0491 -8.4699 0.0162 14 1 2.6071 -9.3986 -0.3132 15 6 4.4114 -8.4174 0.3358 16 7 4.9067 -7.3548 0.9143 17 14 5.5211 -9.8659 -0.0645 18 1 4.7226 -10.9368 -0.7132 19 1 6.5980 -9.4244 -0.9868 20 1 6.1249 -10.3878 1.1878 21 6 0.8614 -7.3956 0.3538 22 6 0.1279 -6.2474 0.4516 23 7 0.6948 -5.0602 0.3368 24 1 -0.3634 0.0042 1.0276 25 1 -0.3633 0.8877 -0.5176 26 1 -0.3633 -0.8922 -0.5102 27 1 1.8373 2.1102 -0.0006 28 1 4.4048 -1.7237 -0.0031 29 1 3.4962 -3.5214 -0.0695 30 1 3.8799 -5.9043 -0.1664 31 1 5.8505 -7.3186 1.1360 32 1 0.3841 -8.3596 0.4503 33 1 -0.9359 -6.3117 0.6263 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334631157.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:48 Heat of formation + Delta-G solvation = 31.064543 kcal Electronic energy + Delta-G solvation = -19430.889196 eV Core-core repulsion = 16355.197118 eV Total energy + Delta-G solvation = -3075.692078 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.86417 -38.25627 -36.74109 -34.38132 -33.83995 -31.19798 -30.50571 -28.63625 -27.45054 -26.03123 -24.32129 -22.02610 -21.83658 -20.06335 -18.64568 -17.93451 -17.42985 -16.71957 -15.73840 -15.22406 -14.74144 -14.39108 -14.21932 -13.74774 -13.56545 -13.39459 -13.14562 -12.75374 -12.63595 -12.56109 -12.33664 -11.95659 -11.75768 -11.45601 -11.21144 -10.94009 -10.90281 -10.28451 -10.13580 -9.78567 -9.43783 -9.33443 -8.90857 -8.33796 -7.99883 -7.75447 -7.07326 -6.77581 -4.65469 0.78833 1.53043 1.89118 2.04829 2.71986 2.79486 3.00382 3.05773 3.22029 3.62263 3.83199 3.86703 4.66474 4.68243 5.07962 5.22826 5.32018 5.57687 5.66155 5.70534 5.86855 5.97528 6.05554 6.26002 6.52582 6.63113 6.65278 6.79602 6.94047 7.11050 7.36939 7.44886 7.76581 7.92744 8.18503 8.40598 8.67966 8.73159 8.86394 9.66212 10.07003 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.004132 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.368384 B = 6774.058117 C = 7963.022972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.048 4.048 3 C -0.248 4.248 4 S 0.167 5.833 5 C -0.213 4.213 6 C -0.143 4.143 7 C 0.560 3.440 8 O -0.472 6.472 9 N -0.652 5.652 10 C 0.338 3.662 11 C -0.240 4.240 12 C 0.142 3.858 13 C -0.453 4.453 14 H 0.082 0.918 15 C 0.075 3.925 16 N -0.796 5.796 17 Si 0.914 3.086 18 H -0.260 1.260 19 H -0.272 1.272 20 H -0.273 1.273 21 C -0.280 4.280 22 C 0.118 3.882 23 N -0.554 5.554 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.095 0.905 27 H 0.166 0.834 28 H 0.170 0.830 29 H 0.406 0.594 30 H 0.133 0.867 31 H 0.280 0.720 32 H 0.102 0.898 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.130 13.001 -1.663 13.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.060 4.060 3 C -0.383 4.383 4 S 0.434 5.566 5 C -0.351 4.351 6 C -0.161 4.161 7 C 0.344 3.656 8 O -0.344 6.344 9 N -0.297 5.297 10 C 0.113 3.887 11 C -0.266 4.266 12 C 0.134 3.866 13 C -0.485 4.485 14 H 0.100 0.900 15 C -0.143 4.143 16 N -0.422 5.422 17 Si 0.739 3.261 18 H -0.183 1.183 19 H -0.197 1.197 20 H -0.199 1.199 21 C -0.304 4.304 22 C -0.035 4.035 23 N -0.273 5.273 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.184 0.816 28 H 0.188 0.812 29 H 0.241 0.759 30 H 0.151 0.849 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.276 14.696 -1.488 14.945 hybrid contribution 0.568 -2.266 -0.091 2.338 sum 2.844 12.429 -1.579 12.848 Atomic orbital electron populations 1.20666 0.88627 1.03691 1.02970 1.19902 0.97640 0.89847 0.98571 1.25243 0.96252 1.02447 1.14328 1.82856 1.05941 0.97268 1.70539 1.25670 0.99780 1.02546 1.07085 1.20422 0.92069 0.94847 1.08786 1.17638 0.86888 0.83032 0.78010 1.90809 1.13235 1.85396 1.44978 1.43270 1.10067 1.04407 1.71998 1.18182 0.90291 0.83069 0.97186 1.21685 1.00540 0.90829 1.13534 1.17597 0.90870 0.92559 0.85622 1.19631 0.92899 0.96417 1.39535 0.89969 1.25951 0.98768 0.97305 0.92239 1.69748 1.14994 1.28338 1.29106 0.86156 0.79685 0.81248 0.79041 1.18319 1.19688 1.19851 1.21705 0.95970 0.97951 1.14740 1.21478 0.98097 0.87540 0.96434 1.67184 1.10014 1.26701 1.23381 0.90993 0.92151 0.88661 0.81625 0.81223 0.75897 0.84946 0.90863 0.87955 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 9.54 36.01 0.34 -1.01 16 2 C -0.05 -0.68 6.01 -104.06 -0.63 -1.30 16 3 C -0.25 -2.76 10.91 28.86 0.31 -2.44 16 4 S 0.17 1.69 23.02 -107.50 -2.47 -0.79 16 5 C -0.21 -2.69 10.38 29.94 0.31 -2.38 16 6 C -0.14 -2.24 5.98 -104.63 -0.63 -2.87 16 7 C 0.56 11.15 7.74 -12.64 -0.10 11.05 16 8 O -0.47 -10.86 12.50 5.25 0.07 -10.80 16 9 N -0.65 -13.21 5.35 -12.53 -0.07 -13.28 16 10 C 0.34 8.27 7.41 -154.74 -1.15 7.13 16 11 C -0.24 -6.11 8.62 -38.45 -0.33 -6.44 16 12 C 0.14 3.73 5.60 -106.55 -0.60 3.13 16 13 C -0.45 -11.61 9.14 -37.65 -0.34 -11.95 16 14 H 0.08 2.02 7.87 -52.49 -0.41 1.60 16 15 C 0.08 1.80 5.31 -17.35 -0.09 1.71 16 16 N -0.80 -19.45 10.70 55.55 0.59 -18.86 16 17 Si 0.91 17.85 29.57 -169.99 -5.03 12.83 16 18 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 C -0.28 -6.86 9.85 -39.06 -0.38 -7.24 16 22 C 0.12 2.84 11.10 -18.05 -0.20 2.64 16 23 N -0.55 -14.18 7.89 -12.77 -0.10 -14.28 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.09 1.54 6.03 -51.93 -0.31 1.23 16 27 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 28 H 0.17 1.82 7.02 -52.48 -0.37 1.45 16 29 H 0.41 6.84 7.21 -40.82 -0.29 6.54 16 30 H 0.13 3.34 6.11 -52.49 -0.32 3.02 16 31 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 32 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 33 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 300.92 15.07 4.53 4.53 Total: -1.00 -30.60 300.92 -8.91 -39.51 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -2.96 Total: 11.11 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -3.47 Total: -9.98 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.43 Total: -46.42 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.07 Total: -10.80 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.47 Total: -0.79 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.60 -8.91 -39.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334631157.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.571 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds