Wall clock time and date at job start Tue Mar 31 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32774 * 123.45616 * 2 1 4 4 S 1.75499 * 110.57871 * 180.22489 * 3 2 1 5 5 C 1.70442 * 92.45135 * 359.73635 * 4 3 2 6 6 C 1.36039 * 110.81428 * 359.97438 * 5 4 3 7 7 C 1.47155 * 123.46420 * 179.97438 * 6 5 4 8 8 O 1.21635 * 119.99829 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99915 * 0.02869 * 7 6 5 10 10 C 1.39383 * 119.99765 * 174.90892 * 9 7 6 11 11 C 1.38661 * 119.64855 * 174.64954 * 10 9 7 12 12 C 1.40818 * 118.67235 * 179.97438 * 11 10 9 13 13 C 1.41544 * 120.99941 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00351 * 206.23604 * 13 12 11 15 15 C 1.40031 * 119.99619 * 26.23516 * 13 12 11 16 16 N 1.30733 * 120.00171 * 9.84152 * 15 13 12 17 17 Si 1.86808 * 119.99871 * 189.83828 * 15 13 12 18 18 H 1.48500 * 109.47025 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46848 * 119.99870 * 17 15 13 20 20 H 1.48497 * 109.47181 * 240.00207 * 17 15 13 21 21 C 1.41169 * 118.00615 * 359.97438 * 12 11 10 22 22 C 1.36594 * 119.13073 * 0.02562 * 21 12 11 23 23 N 1.32062 * 121.25896 * 359.97034 * 22 21 12 24 24 H 1.08998 * 109.47356 * 270.23462 * 1 2 3 25 25 H 1.08994 * 109.47041 * 30.24341 * 1 2 3 26 26 H 1.09006 * 109.46681 * 150.23851 * 1 2 3 27 27 H 1.07996 * 124.70794 * 359.96075 * 3 2 1 28 28 H 1.08005 * 124.59597 * 179.97438 * 5 4 3 29 29 H 0.96995 * 120.00292 * 354.90593 * 9 7 6 30 30 H 1.07996 * 120.66416 * 0.02562 * 11 10 9 31 31 H 0.97010 * 120.00291 * 179.97438 * 16 15 13 32 32 H 1.08006 * 120.43243 * 180.02562 * 21 12 11 33 33 H 1.07996 * 119.36970 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7166 -0.0064 5 6 3.6414 -0.9597 -0.0012 6 6 2.3033 -1.2050 0.0057 7 6 1.7266 -2.5588 0.0109 8 8 0.5191 -2.7054 0.0165 9 7 2.5363 -3.6362 0.0095 10 6 1.9942 -4.9154 0.1215 11 6 2.8207 -6.0230 0.0077 12 6 2.2514 -7.3056 0.1248 13 6 3.0491 -8.4699 0.0162 14 1 2.6071 -9.3986 -0.3132 15 6 4.4114 -8.4174 0.3358 16 7 4.9067 -7.3548 0.9143 17 14 5.5211 -9.8659 -0.0645 18 1 4.7226 -10.9368 -0.7132 19 1 6.5980 -9.4244 -0.9868 20 1 6.1249 -10.3878 1.1878 21 6 0.8614 -7.3956 0.3538 22 6 0.1279 -6.2474 0.4516 23 7 0.6948 -5.0602 0.3368 24 1 -0.3634 0.0042 1.0276 25 1 -0.3633 0.8877 -0.5176 26 1 -0.3633 -0.8922 -0.5102 27 1 1.8373 2.1102 -0.0006 28 1 4.4048 -1.7237 -0.0031 29 1 3.4962 -3.5214 -0.0695 30 1 3.8799 -5.9043 -0.1664 31 1 5.8505 -7.3186 1.1360 32 1 0.3841 -8.3596 0.4503 33 1 -0.9359 -6.3117 0.6263 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334631157.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:48 Heat of formation + Delta-G solvation = 13.371576 kcal Electronic energy + Delta-G solvation = -19431.656421 eV Core-core repulsion = 16355.197118 eV Total energy + Delta-G solvation = -3076.459303 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.42254 -39.89207 -38.02573 -36.14995 -35.60131 -32.55805 -32.21677 -30.31748 -28.51652 -27.94124 -25.59986 -23.84803 -23.40183 -21.61837 -20.01119 -19.49929 -18.65652 -18.00001 -17.46935 -16.94633 -16.24898 -16.07814 -15.91299 -15.32813 -14.89317 -14.77288 -14.37198 -14.28289 -14.10433 -14.04050 -13.57447 -13.18821 -13.00977 -12.88503 -12.78428 -12.70227 -12.09668 -11.87672 -11.84299 -11.53830 -11.21375 -10.92765 -9.94867 -9.87349 -9.62559 -9.27558 -8.89181 -8.59993 -6.59980 -0.25925 0.63081 0.70150 0.95000 0.98144 1.14253 1.41132 1.55698 1.56313 2.10560 2.20038 2.38261 2.83470 3.68896 3.73500 3.79030 4.21460 4.25086 4.37610 4.65703 4.68273 4.75869 4.80628 4.83143 4.91425 5.00149 5.09354 5.22893 5.28057 5.46575 5.56397 5.64641 5.91158 6.12655 6.45285 6.55911 6.77640 6.82243 7.26235 7.80343 8.27906 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.004132 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.368384 B = 6774.058117 C = 7963.022972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.079 4.079 3 C -0.239 4.239 4 S 0.257 5.743 5 C -0.215 4.215 6 C -0.180 4.180 7 C 0.556 3.444 8 O -0.513 6.513 9 N -0.648 5.648 10 C 0.334 3.666 11 C -0.258 4.258 12 C 0.113 3.887 13 C -0.483 4.483 14 H 0.084 0.916 15 C 0.037 3.963 16 N -0.818 5.818 17 Si 0.991 3.009 18 H -0.258 1.258 19 H -0.262 1.262 20 H -0.266 1.266 21 C -0.294 4.294 22 C 0.112 3.888 23 N -0.579 5.579 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.198 0.802 28 H 0.184 0.816 29 H 0.419 0.581 30 H 0.130 0.870 31 H 0.292 0.708 32 H 0.117 0.883 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.252 14.485 -1.802 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.089 4.089 3 C -0.374 4.374 4 S 0.525 5.475 5 C -0.354 4.354 6 C -0.198 4.198 7 C 0.343 3.657 8 O -0.388 6.388 9 N -0.295 5.295 10 C 0.108 3.892 11 C -0.284 4.284 12 C 0.105 3.895 13 C -0.513 4.513 14 H 0.102 0.898 15 C -0.179 4.179 16 N -0.444 5.444 17 Si 0.811 3.189 18 H -0.182 1.182 19 H -0.186 1.186 20 H -0.190 1.190 21 C -0.317 4.317 22 C -0.041 4.041 23 N -0.299 5.299 24 H 0.085 0.915 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.215 0.785 28 H 0.201 0.799 29 H 0.257 0.743 30 H 0.147 0.853 31 H 0.103 0.897 32 H 0.135 0.865 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.414 16.221 -1.625 16.890 hybrid contribution -0.001 -2.583 -0.027 2.583 sum 4.413 13.639 -1.652 14.430 Atomic orbital electron populations 1.20562 0.89095 1.03269 1.02546 1.19942 0.97804 0.90171 1.01007 1.25655 0.97158 1.02980 1.11615 1.82632 1.03970 0.93633 1.67295 1.26017 0.98948 1.05479 1.04930 1.20149 0.93574 0.92880 1.13215 1.18340 0.86501 0.84357 0.76511 1.90777 1.14967 1.86242 1.46808 1.43289 1.10947 1.03360 1.71897 1.18437 0.90045 0.84606 0.96112 1.21669 1.00448 0.91165 1.15124 1.18031 0.91957 0.93359 0.86152 1.19919 0.94291 0.96387 1.40733 0.89786 1.26830 0.99490 1.00254 0.91348 1.69783 1.16020 1.29980 1.28619 0.85023 0.77446 0.77404 0.79033 1.18190 1.18628 1.19043 1.21893 0.95714 0.98840 1.15278 1.21940 0.99408 0.87183 0.95537 1.67312 1.10669 1.27395 1.24489 0.91531 0.89285 0.92216 0.78465 0.79879 0.74345 0.85285 0.89739 0.86469 0.83289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.60 9.54 71.24 0.68 -1.92 16 2 C -0.08 -2.13 6.01 -19.46 -0.12 -2.24 16 3 C -0.24 -4.52 10.91 66.64 0.73 -3.79 16 4 S 0.26 4.18 23.02 -56.49 -1.30 2.88 16 5 C -0.22 -5.02 10.38 67.31 0.70 -4.32 16 6 C -0.18 -5.60 5.98 -19.87 -0.12 -5.72 16 7 C 0.56 22.95 7.74 86.58 0.67 23.62 16 8 O -0.51 -24.88 12.50 -4.14 -0.05 -24.93 16 9 N -0.65 -27.16 5.35 -311.81 -1.67 -28.83 16 10 C 0.33 16.99 7.41 132.79 0.98 17.97 16 11 C -0.26 -13.60 8.62 23.00 0.20 -13.41 16 12 C 0.11 6.14 5.60 -21.11 -0.12 6.02 16 13 C -0.48 -25.13 9.14 23.52 0.21 -24.92 16 14 H 0.08 4.19 7.87 -2.91 -0.02 4.17 16 15 C 0.04 1.76 5.31 85.29 0.45 2.22 16 16 N -0.82 -40.06 10.70 21.84 0.23 -39.82 16 17 Si 0.99 35.92 29.57 68.60 2.03 37.95 16 18 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 19 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 20 H -0.27 -9.27 7.11 99.48 0.71 -8.57 16 21 C -0.29 -14.80 9.85 22.61 0.22 -14.58 16 22 C 0.11 5.56 11.10 84.27 0.94 6.49 16 23 N -0.58 -30.74 7.89 -194.31 -1.53 -32.27 16 24 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.09 1.79 8.13 -2.39 -0.02 1.77 16 26 H 0.06 2.05 6.03 -2.38 -0.01 2.04 16 27 H 0.20 2.39 8.06 -2.91 -0.02 2.36 16 28 H 0.18 3.59 7.02 -2.91 -0.02 3.57 16 29 H 0.42 14.46 7.21 -92.71 -0.67 13.79 16 30 H 0.13 6.72 6.11 -2.91 -0.02 6.70 16 31 H 0.29 12.68 8.29 -92.70 -0.77 11.91 16 32 H 0.12 5.36 8.06 -2.91 -0.02 5.34 16 33 H 0.15 6.33 8.06 -2.91 -0.02 6.30 16 Total: -1.00 -68.94 300.92 3.64 -65.30 By element: Atomic # 1 Polarization: 33.81 SS G_CDS: 0.50 Total: 34.31 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 5.43 Total: -14.58 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -2.97 Total: -100.93 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.05 Total: -24.93 kcal Atomic # 14 Polarization: 35.92 SS G_CDS: 2.03 Total: 37.95 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -1.30 Total: 2.88 kcal Total: -68.94 3.64 -65.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334631157.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.675 kcal (2) G-P(sol) polarization free energy of solvation -68.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds