Wall clock time and date at job start Tue Mar 31 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34974 * 127.26242 * 2 1 4 4 C 1.39555 * 111.68115 * 179.83132 * 3 2 1 5 5 C 1.47543 * 122.11659 * 180.22001 * 4 3 2 6 6 O 1.21597 * 119.99770 * 353.96464 * 5 4 3 7 7 N 1.34776 * 119.99628 * 173.97379 * 5 4 3 8 8 C 1.36947 * 119.99509 * 178.06433 * 7 5 4 9 9 H 1.08007 * 120.00074 * 110.25763 * 8 7 5 10 10 C 1.38958 * 120.00257 * 290.25888 * 8 7 5 11 11 N 1.31397 * 119.99793 * 327.03286 * 10 8 7 12 12 Si 1.86801 * 120.00185 * 147.03081 * 10 8 7 13 13 H 1.48494 * 109.46986 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47219 * 120.00172 * 12 10 8 15 15 H 1.48499 * 109.46688 * 239.99834 * 12 10 8 16 16 C 1.39705 * 120.00313 * 358.06126 * 7 5 4 17 17 C 1.38976 * 120.07904 * 260.22393 * 16 7 5 18 18 C 1.38077 * 119.91926 * 179.74604 * 17 16 7 19 19 C 1.38314 * 120.07796 * 0.52601 * 18 17 16 20 20 C 1.38313 * 120.16192 * 359.72968 * 19 18 17 21 21 C 1.38085 * 120.07501 * 0.02562 * 20 19 18 22 22 N 1.30674 * 115.76215 * 0.48404 * 4 3 2 23 23 S 1.56143 * 109.79559 * 359.72992 * 22 4 3 24 24 H 1.08998 * 109.47619 * 179.70430 * 1 2 3 25 25 H 1.09003 * 109.47109 * 59.70502 * 1 2 3 26 26 H 1.09003 * 109.47183 * 299.70991 * 1 2 3 27 27 H 1.08001 * 124.15829 * 359.96581 * 3 2 1 28 28 H 0.97002 * 120.00230 * 185.01566 * 11 10 8 29 29 H 1.08003 * 120.04086 * 359.97438 * 17 16 7 30 30 H 1.08002 * 119.96585 * 180.25632 * 18 17 16 31 31 H 1.08004 * 119.92129 * 179.70307 * 19 18 17 32 32 H 1.07995 * 119.96146 * 179.97438 * 20 19 18 33 33 H 1.08005 * 120.03367 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.0742 0.0000 4 6 3.6685 0.6994 0.0038 5 6 4.7597 1.6924 0.0094 6 8 4.5049 2.8763 -0.0999 7 7 6.0389 1.2871 0.1355 8 6 7.0545 2.2052 0.1009 9 1 7.6154 2.4241 0.9975 10 6 7.3633 2.8552 -1.0878 11 7 7.2159 2.2317 -2.2350 12 14 7.9881 4.6153 -1.0549 13 1 8.0640 5.0874 0.3509 14 1 9.3382 4.6730 -1.6707 15 1 7.0580 5.4849 -1.8191 16 6 6.3288 -0.0694 0.3015 17 6 6.5973 -0.5743 1.5682 18 6 6.8783 -1.9165 1.7292 19 6 6.9034 -2.7562 0.6304 20 6 6.6419 -2.2562 -0.6324 21 6 6.3552 -0.9159 -0.8003 22 7 3.8995 -0.5868 -0.0033 23 16 2.5469 -1.3670 -0.0076 24 1 -0.3634 -1.0276 -0.0053 25 1 -0.3633 0.5184 -0.8873 26 1 -0.3634 0.5093 0.8926 27 1 1.9801 2.0979 -0.0005 28 1 7.4995 2.6582 -3.0588 29 1 6.5826 0.0817 2.4260 30 1 7.0829 -2.3105 2.7138 31 1 7.1282 -3.8048 0.7587 32 1 6.6628 -2.9146 -1.4882 33 1 6.1515 -0.5261 -1.7867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335431284.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:09 Heat of formation + Delta-G solvation = 52.577441 kcal Electronic energy + Delta-G solvation = -20492.178883 eV Core-core repulsion = 17417.419674 eV Total energy + Delta-G solvation = -3074.759209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.93628 -38.25800 -37.09712 -34.41252 -32.97258 -31.97036 -30.07423 -28.55922 -27.82551 -26.11201 -23.81518 -21.79144 -21.66103 -20.31134 -19.10624 -17.90767 -17.27901 -16.52531 -15.44257 -15.23968 -14.65867 -14.30482 -14.14307 -13.94801 -13.59250 -13.16157 -12.87918 -12.69722 -12.59945 -12.46065 -12.40748 -11.83393 -11.63331 -11.15657 -10.94385 -10.74476 -10.63670 -10.36309 -10.33909 -10.21201 -9.10719 -8.91784 -8.69167 -8.29547 -8.06217 -7.63073 -7.31237 -6.37496 -4.24742 1.08428 1.81237 2.12293 2.28538 2.44143 2.52469 3.23660 3.36182 3.41454 4.10921 4.38528 4.54494 4.74060 4.96048 5.03495 5.23142 5.50667 5.60303 5.61798 5.64661 5.72692 5.84361 5.91098 6.11814 6.25169 6.27178 6.40914 6.67748 6.87240 6.93251 7.17580 7.28509 7.52036 7.58824 7.76168 8.32225 8.81763 8.89279 9.29994 9.94073 10.62052 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.014918 B = 0.007898 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.471642 B = 3544.164308 C = 4889.536411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.257 4.257 3 C -0.142 4.142 4 C 0.069 3.931 5 C 0.562 3.438 6 O -0.541 6.541 7 N -0.397 5.397 8 C -0.362 4.362 9 H 0.083 0.917 10 C 0.088 3.912 11 N -0.831 5.831 12 Si 0.911 3.089 13 H -0.264 1.264 14 H -0.285 1.285 15 H -0.277 1.277 16 C 0.189 3.811 17 C -0.128 4.128 18 C -0.123 4.123 19 C -0.142 4.142 20 C -0.123 4.123 21 C -0.071 4.071 22 N -0.484 5.484 23 S 0.393 5.607 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.164 0.836 28 H 0.270 0.730 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 -9.308 3.487 13.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.387 4.387 3 C -0.176 4.176 4 C -0.106 4.106 5 C 0.346 3.654 6 O -0.419 6.419 7 N -0.115 5.115 8 C -0.487 4.487 9 H 0.100 0.900 10 C -0.125 4.125 11 N -0.462 5.462 12 Si 0.737 3.263 13 H -0.188 1.188 14 H -0.211 1.211 15 H -0.202 1.202 16 C 0.098 3.902 17 C -0.148 4.148 18 C -0.142 4.142 19 C -0.160 4.160 20 C -0.142 4.142 21 C -0.092 4.092 22 N -0.315 5.315 23 S 0.549 5.451 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.181 0.819 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.381 -10.649 3.192 13.922 hybrid contribution 0.027 2.685 -0.262 2.698 sum -8.354 -7.964 2.930 11.908 Atomic orbital electron populations 1.20115 0.86897 1.02653 1.02972 1.25932 1.02598 1.00465 1.09744 1.21249 0.90756 1.01420 1.04148 1.21718 0.95601 0.89760 1.03555 1.17687 0.81724 0.86242 0.79790 1.90627 1.82403 1.16570 1.52269 1.40577 1.03815 1.02633 1.64516 1.18790 1.15192 1.18891 0.95838 0.89989 1.25595 0.93454 0.98705 0.94729 1.70024 1.40559 1.36468 0.99122 0.86201 0.77279 0.83655 0.79171 1.18813 1.21106 1.20210 1.18073 0.94501 0.85604 0.91988 1.21151 1.01934 0.95089 0.96615 1.20726 1.02193 0.93424 0.97876 1.20821 1.03549 0.98616 0.93046 1.20827 1.01694 0.95154 0.96556 1.21232 0.96606 0.92649 0.98678 1.73279 1.24780 1.10681 1.22786 1.80436 0.89775 1.14562 1.60308 0.91336 0.90679 0.90682 0.81903 0.91974 0.87227 0.87348 0.87529 0.87416 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.46 36.01 0.38 -0.30 16 2 C -0.26 -3.72 6.58 -35.47 -0.23 -3.95 16 3 C -0.14 -2.59 9.93 -40.25 -0.40 -2.99 16 4 C 0.07 1.51 6.51 -84.07 -0.55 0.96 16 5 C 0.56 14.75 7.48 -12.47 -0.09 14.66 16 6 O -0.54 -15.55 16.39 5.28 0.09 -15.47 16 7 N -0.40 -10.52 2.40 -60.07 -0.14 -10.66 16 8 C -0.36 -10.22 8.40 -15.00 -0.13 -10.35 16 9 H 0.08 2.29 8.01 -52.48 -0.42 1.87 16 10 C 0.09 2.46 4.99 -17.47 -0.09 2.37 16 11 N -0.83 -23.65 13.80 55.50 0.77 -22.88 16 12 Si 0.91 21.90 29.66 -169.99 -5.04 16.86 16 13 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 C 0.19 4.44 3.07 -83.72 -0.26 4.18 16 17 C -0.13 -2.66 9.97 -39.37 -0.39 -3.05 16 18 C -0.12 -2.17 10.04 -39.61 -0.40 -2.57 16 19 C -0.14 -2.39 10.04 -39.53 -0.40 -2.79 16 20 C -0.12 -2.28 10.04 -39.61 -0.40 -2.68 16 21 C -0.07 -1.58 7.99 -39.36 -0.31 -1.90 16 22 N -0.48 -9.55 7.08 24.89 0.18 -9.37 16 23 S 0.39 5.85 23.20 -107.50 -2.49 3.35 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.16 2.88 8.00 -52.49 -0.42 2.46 16 28 H 0.27 7.19 8.32 -40.82 -0.34 6.85 16 29 H 0.11 2.24 8.06 -52.48 -0.42 1.81 16 30 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.12 2.88 8.06 -52.48 -0.42 2.46 16 LS Contribution 308.40 15.07 4.65 4.65 Total: -1.00 -32.08 308.40 -8.63 -40.71 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -3.36 Total: 1.22 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -3.27 Total: -8.40 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.80 Total: -42.92 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.09 Total: -15.47 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.04 Total: 16.86 kcal Atomic # 16 Polarization: 5.85 SS G_CDS: -2.49 Total: 3.35 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.08 -8.63 -40.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335431284.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.288 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds