Wall clock time and date at job start Tue Mar 31 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34974 * 127.26242 * 2 1 4 4 C 1.39555 * 111.68115 * 179.83132 * 3 2 1 5 5 C 1.47543 * 122.11659 * 180.22001 * 4 3 2 6 6 O 1.21597 * 119.99770 * 353.96464 * 5 4 3 7 7 N 1.34776 * 119.99628 * 173.97379 * 5 4 3 8 8 C 1.36947 * 119.99509 * 178.06433 * 7 5 4 9 9 H 1.08007 * 120.00074 * 110.25763 * 8 7 5 10 10 C 1.38958 * 120.00257 * 290.25888 * 8 7 5 11 11 N 1.31397 * 119.99793 * 327.03286 * 10 8 7 12 12 Si 1.86801 * 120.00185 * 147.03081 * 10 8 7 13 13 H 1.48494 * 109.46986 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47219 * 120.00172 * 12 10 8 15 15 H 1.48499 * 109.46688 * 239.99834 * 12 10 8 16 16 C 1.39705 * 120.00313 * 358.06126 * 7 5 4 17 17 C 1.38976 * 120.07904 * 260.22393 * 16 7 5 18 18 C 1.38077 * 119.91926 * 179.74604 * 17 16 7 19 19 C 1.38314 * 120.07796 * 0.52601 * 18 17 16 20 20 C 1.38313 * 120.16192 * 359.72968 * 19 18 17 21 21 C 1.38085 * 120.07501 * 0.02562 * 20 19 18 22 22 N 1.30674 * 115.76215 * 0.48404 * 4 3 2 23 23 S 1.56143 * 109.79559 * 359.72992 * 22 4 3 24 24 H 1.08998 * 109.47619 * 179.70430 * 1 2 3 25 25 H 1.09003 * 109.47109 * 59.70502 * 1 2 3 26 26 H 1.09003 * 109.47183 * 299.70991 * 1 2 3 27 27 H 1.08001 * 124.15829 * 359.96581 * 3 2 1 28 28 H 0.97002 * 120.00230 * 185.01566 * 11 10 8 29 29 H 1.08003 * 120.04086 * 359.97438 * 17 16 7 30 30 H 1.08002 * 119.96585 * 180.25632 * 18 17 16 31 31 H 1.08004 * 119.92129 * 179.70307 * 19 18 17 32 32 H 1.07995 * 119.96146 * 179.97438 * 20 19 18 33 33 H 1.08005 * 120.03367 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.0742 0.0000 4 6 3.6685 0.6994 0.0038 5 6 4.7597 1.6924 0.0094 6 8 4.5049 2.8763 -0.0999 7 7 6.0389 1.2871 0.1355 8 6 7.0545 2.2052 0.1009 9 1 7.6154 2.4241 0.9975 10 6 7.3633 2.8552 -1.0878 11 7 7.2159 2.2317 -2.2350 12 14 7.9881 4.6153 -1.0549 13 1 8.0640 5.0874 0.3509 14 1 9.3382 4.6730 -1.6707 15 1 7.0580 5.4849 -1.8191 16 6 6.3288 -0.0694 0.3015 17 6 6.5973 -0.5743 1.5682 18 6 6.8783 -1.9165 1.7292 19 6 6.9034 -2.7562 0.6304 20 6 6.6419 -2.2562 -0.6324 21 6 6.3552 -0.9159 -0.8003 22 7 3.8995 -0.5868 -0.0033 23 16 2.5469 -1.3670 -0.0076 24 1 -0.3634 -1.0276 -0.0053 25 1 -0.3633 0.5184 -0.8873 26 1 -0.3634 0.5093 0.8926 27 1 1.9801 2.0979 -0.0005 28 1 7.4995 2.6582 -3.0588 29 1 6.5826 0.0817 2.4260 30 1 7.0829 -2.3105 2.7138 31 1 7.1282 -3.8048 0.7587 32 1 6.6628 -2.9146 -1.4882 33 1 6.1515 -0.5261 -1.7867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335431284.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:09 Heat of formation + Delta-G solvation = 33.338935 kcal Electronic energy + Delta-G solvation = -20493.013128 eV Core-core repulsion = 17417.419674 eV Total energy + Delta-G solvation = -3075.593453 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.60253 -39.76921 -38.85821 -36.31865 -34.37007 -33.79913 -31.60184 -30.22710 -29.05667 -27.90689 -25.55478 -23.36722 -23.21595 -21.78887 -20.76498 -19.50183 -18.95862 -18.15433 -17.17804 -16.95306 -16.33767 -16.10366 -15.67814 -15.63285 -14.95625 -14.65351 -14.40547 -14.11227 -13.96616 -13.75758 -13.71975 -13.50882 -13.21956 -13.20249 -12.80702 -12.32441 -12.18991 -11.97216 -11.89292 -11.66449 -10.84768 -10.76110 -10.36963 -9.69399 -9.58167 -9.36243 -9.15079 -8.43441 -6.40601 -0.29580 0.52483 0.67495 0.76044 0.89956 1.07882 1.28584 1.37912 1.48328 2.16084 2.50448 2.76392 2.98888 3.16578 3.75067 3.99678 4.22747 4.29121 4.29745 4.39628 4.42029 4.76854 4.78082 4.78579 4.88772 4.95819 5.09661 5.21436 5.33138 5.37921 5.48405 5.69355 5.77473 5.94552 6.17820 6.32640 6.78608 6.90707 7.30446 7.95477 8.53406 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.014918 B = 0.007898 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.471642 B = 3544.164308 C = 4889.536411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.232 4.232 3 C -0.172 4.172 4 C 0.036 3.964 5 C 0.546 3.454 6 O -0.590 6.590 7 N -0.408 5.408 8 C -0.388 4.388 9 H 0.071 0.929 10 C 0.046 3.954 11 N -0.863 5.863 12 Si 0.968 3.032 13 H -0.263 1.263 14 H -0.262 1.262 15 H -0.284 1.284 16 C 0.162 3.838 17 C -0.145 4.145 18 C -0.111 4.111 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.090 4.090 22 N -0.516 5.516 23 S 0.485 5.515 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.156 0.844 28 H 0.274 0.726 29 H 0.100 0.900 30 H 0.147 0.853 31 H 0.155 0.845 32 H 0.136 0.864 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.204 -12.631 4.292 16.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.363 4.363 3 C -0.204 4.204 4 C -0.137 4.137 5 C 0.332 3.668 6 O -0.472 6.472 7 N -0.126 5.126 8 C -0.513 4.513 9 H 0.089 0.911 10 C -0.164 4.164 11 N -0.494 5.494 12 Si 0.791 3.209 13 H -0.186 1.186 14 H -0.186 1.186 15 H -0.210 1.210 16 C 0.072 3.928 17 C -0.165 4.165 18 C -0.129 4.129 19 C -0.144 4.144 20 C -0.136 4.136 21 C -0.110 4.110 22 N -0.350 5.350 23 S 0.641 5.359 24 H 0.117 0.883 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.174 0.826 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.165 0.835 31 H 0.172 0.828 32 H 0.153 0.847 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.597 -13.990 4.006 17.432 hybrid contribution 0.277 3.460 -0.454 3.500 sum -9.320 -10.530 3.553 14.504 Atomic orbital electron populations 1.20389 0.83097 1.05100 1.04309 1.26467 1.04810 0.98948 1.06073 1.21193 0.90063 1.02418 1.06757 1.21207 0.95226 0.89725 1.07524 1.18349 0.82877 0.86850 0.78703 1.90544 1.83484 1.18696 1.54482 1.40720 1.03705 1.03981 1.64161 1.18915 1.15962 1.20694 0.95711 0.91146 1.26356 0.93922 1.01765 0.94345 1.70079 1.42048 1.37682 0.99603 0.85339 0.77560 0.78879 0.79098 1.18641 1.18650 1.21038 1.18209 0.96736 0.84315 0.93545 1.21223 1.03205 0.96879 0.95228 1.21140 0.99931 0.91713 1.00164 1.21302 1.00861 1.00669 0.91533 1.21128 1.00241 0.93572 0.98697 1.20983 0.99069 0.94449 0.96509 1.72817 1.28940 1.10167 1.23069 1.79934 0.86991 1.12248 1.56773 0.88306 0.89433 0.89074 0.82601 0.91677 0.88150 0.83489 0.82760 0.84656 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.46 71.24 0.75 -0.37 16 2 C -0.23 -6.21 6.58 24.93 0.16 -6.04 16 3 C -0.17 -6.39 9.93 21.84 0.22 -6.18 16 4 C 0.04 1.64 6.51 42.09 0.27 1.91 16 5 C 0.55 30.78 7.48 86.70 0.65 31.43 16 6 O -0.59 -36.67 16.39 -4.02 -0.07 -36.74 16 7 N -0.41 -23.09 2.40 -462.22 -1.11 -24.20 16 8 C -0.39 -23.32 8.40 84.07 0.71 -22.62 16 9 H 0.07 4.23 8.01 -2.91 -0.02 4.20 16 10 C 0.05 2.69 4.99 84.93 0.42 3.11 16 11 N -0.86 -51.80 13.80 21.66 0.30 -51.50 16 12 Si 0.97 46.98 29.66 68.60 2.03 49.01 16 13 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 14 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 15 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 16 C 0.16 7.91 3.07 38.24 0.12 8.03 16 17 C -0.15 -6.09 9.97 22.41 0.22 -5.87 16 18 C -0.11 -3.57 10.04 22.25 0.22 -3.35 16 19 C -0.13 -3.70 10.04 22.31 0.22 -3.48 16 20 C -0.12 -4.10 10.04 22.25 0.22 -3.88 16 21 C -0.09 -4.08 7.99 22.41 0.18 -3.90 16 22 N -0.52 -20.39 7.08 -75.17 -0.53 -20.92 16 23 S 0.48 13.15 23.20 -56.49 -1.31 11.83 16 24 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 27 H 0.16 5.84 8.00 -2.91 -0.02 5.82 16 28 H 0.27 15.29 8.32 -92.71 -0.77 14.52 16 29 H 0.10 4.26 8.06 -2.91 -0.02 4.23 16 30 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 33 H 0.08 4.13 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -77.54 308.40 4.81 -72.73 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 1.13 Total: 10.99 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 4.37 Total: -11.20 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -1.34 Total: -96.62 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.07 Total: -36.74 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Atomic # 16 Polarization: 13.15 SS G_CDS: -1.31 Total: 11.83 kcal Total: -77.54 4.81 -72.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335431284.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.067 kcal (2) G-P(sol) polarization free energy of solvation -77.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds