Wall clock time and date at job start Tue Mar 31 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34992 * 127.27159 * 2 1 4 4 C 1.39505 * 111.68582 * 180.02562 * 3 2 1 5 5 C 1.47641 * 122.11254 * 180.02562 * 4 3 2 6 6 O 1.21588 * 119.99367 * 359.97438 * 5 4 3 7 7 N 1.34767 * 120.00350 * 180.27550 * 5 4 3 8 8 C 1.39127 * 120.00094 * 175.43732 * 7 5 4 9 9 C 1.39515 * 119.83672 * 215.02680 * 8 7 5 10 10 C 1.36352 * 120.16757 * 179.75739 * 9 8 7 11 11 C 1.40880 * 119.83057 * 0.51705 * 10 9 8 12 12 C 1.41136 * 120.16334 * 179.71519 * 11 10 9 13 13 H 1.07997 * 120.00603 * 214.80611 * 12 11 10 14 14 C 1.39907 * 119.99810 * 34.80711 * 12 11 10 15 15 N 1.30872 * 120.00312 * 355.56037 * 14 12 11 16 16 Si 1.86811 * 120.00107 * 175.56043 * 14 12 11 17 17 H 1.48501 * 109.46877 * 59.99749 * 16 14 12 18 18 H 1.48497 * 109.47069 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46856 * 300.00072 * 16 14 12 20 20 C 1.40877 * 119.67561 * 359.74289 * 11 10 9 21 21 C 1.36356 * 119.83303 * 359.97438 * 20 11 10 22 22 N 1.30627 * 115.78102 * 0.26680 * 4 3 2 23 23 S 1.56142 * 109.79918 * 359.58484 * 22 4 3 24 24 H 1.08998 * 109.47204 * 89.99753 * 1 2 3 25 25 H 1.08997 * 109.46749 * 209.99951 * 1 2 3 26 26 H 1.09004 * 109.46718 * 329.99349 * 1 2 3 27 27 H 1.08001 * 124.15355 * 0.02562 * 3 2 1 28 28 H 0.97000 * 119.99968 * 355.43360 * 7 5 4 29 29 H 1.08006 * 119.91513 * 0.02562 * 9 8 7 30 30 H 1.08005 * 120.09052 * 180.25694 * 10 9 8 31 31 H 0.97000 * 120.00087 * 180.02562 * 15 14 12 32 32 H 1.08007 * 120.08033 * 179.97438 * 20 11 10 33 33 H 1.08003 * 119.92018 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3246 1.0742 0.0000 4 6 3.6683 0.6994 -0.0006 5 6 4.7603 1.6931 -0.0001 6 8 4.5011 2.8810 0.0003 7 7 6.0442 1.2835 -0.0063 8 6 7.0716 2.2167 -0.1018 9 6 8.2327 1.9009 -0.8080 10 6 9.2418 2.8122 -0.9100 11 6 9.1144 4.0712 -0.2908 12 6 10.1570 5.0176 -0.3868 13 1 10.3655 5.6775 0.4423 14 6 10.9207 5.1007 -1.5561 15 7 10.7264 4.2448 -2.5269 16 14 12.2178 6.4336 -1.7319 17 1 13.2279 6.2865 -0.6533 18 1 12.8830 6.3058 -3.0533 19 1 11.5738 7.7677 -1.6282 20 6 7.9413 4.3808 0.4252 21 6 6.9381 3.4615 0.5137 22 7 3.8995 -0.5862 -0.0065 23 16 2.5472 -1.3668 -0.0008 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.9805 2.0980 0.0004 28 1 6.2519 0.3380 0.0558 29 1 8.3306 0.9338 -1.2787 30 1 10.1384 2.5680 -1.4605 31 1 11.2561 4.3023 -3.3375 32 1 7.8368 5.3439 0.9028 33 1 6.0383 3.6972 1.0626 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335715398.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:06 Heat of formation + Delta-G solvation = 25.627314 kcal Electronic energy + Delta-G solvation = -18982.095815 eV Core-core repulsion = 15906.167960 eV Total energy + Delta-G solvation = -3075.927854 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40449 -38.65939 -37.04417 -34.51705 -33.52580 -32.77277 -29.59002 -29.01930 -28.35745 -26.18155 -24.29061 -21.74973 -21.00584 -20.35384 -19.65685 -18.22459 -17.43692 -17.19263 -16.06560 -15.49129 -15.14993 -14.68989 -14.23889 -13.91025 -13.76720 -13.27949 -13.23412 -12.92329 -12.84471 -12.62838 -12.13160 -11.71674 -11.37027 -11.27216 -11.14645 -11.05134 -11.00454 -10.72854 -10.07331 -9.64773 -9.51808 -9.45923 -9.19847 -8.90909 -8.86208 -7.54461 -6.86201 -6.61653 -4.34057 0.46622 1.26263 1.71200 1.73520 2.70587 3.09145 3.10498 3.12089 3.16648 3.53917 3.70081 3.98377 4.47872 4.70849 4.83766 5.04507 5.16668 5.17466 5.48596 5.63189 5.66206 5.72600 6.19890 6.26877 6.44236 6.75269 6.93986 7.06645 7.19887 7.29747 7.64096 7.74446 7.84866 8.06122 8.25491 8.31441 8.60514 8.70027 8.92511 8.99710 10.29198 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.048532 B = 0.003029 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.797945 B = 9242.286671 C = 9519.045484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.250 4.250 3 C -0.140 4.140 4 C 0.067 3.933 5 C 0.571 3.429 6 O -0.520 6.520 7 N -0.627 5.627 8 C -0.001 4.001 9 C -0.116 4.116 10 C -0.142 4.142 11 C 0.102 3.898 12 C -0.460 4.460 13 H 0.076 0.924 14 C 0.069 3.931 15 N -0.811 5.811 16 Si 0.916 3.084 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.205 4.205 21 C -0.084 4.084 22 N -0.523 5.523 23 S 0.446 5.554 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.171 0.829 28 H 0.404 0.596 29 H 0.092 0.908 30 H 0.133 0.867 31 H 0.279 0.721 32 H 0.097 0.903 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.485 -10.946 2.987 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.381 4.381 3 C -0.173 4.173 4 C -0.108 4.108 5 C 0.352 3.648 6 O -0.396 6.396 7 N -0.269 5.269 8 C -0.094 4.094 9 C -0.137 4.137 10 C -0.162 4.162 11 C 0.099 3.901 12 C -0.491 4.491 13 H 0.094 0.906 14 C -0.146 4.146 15 N -0.438 5.438 16 Si 0.741 3.259 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.226 4.226 21 C -0.104 4.104 22 N -0.357 5.357 23 S 0.601 5.399 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.189 0.811 28 H 0.239 0.761 29 H 0.110 0.890 30 H 0.151 0.849 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.809 -12.166 2.728 19.359 hybrid contribution 0.275 2.026 -0.298 2.066 sum -14.534 -10.140 2.429 17.887 Atomic orbital electron populations 1.20199 0.86144 1.03598 1.03198 1.26067 1.03234 1.00114 1.08639 1.21293 0.90352 1.01985 1.03645 1.21280 0.95254 0.89219 1.05085 1.17244 0.81959 0.86797 0.78769 1.90792 1.83064 1.15742 1.50014 1.42797 1.04211 1.10268 1.69650 1.17288 0.90255 0.92452 1.09359 1.20327 0.94455 0.99224 0.99649 1.21194 0.99054 0.92530 1.03375 1.17734 0.91204 0.91507 0.89647 1.19477 1.12844 1.16385 1.00349 0.90571 1.25895 0.96757 0.96525 0.95406 1.69754 1.35919 1.32526 1.05576 0.86237 0.80291 0.81280 0.78065 1.19039 1.20431 1.19073 1.20801 0.94508 0.98675 1.08570 1.20408 0.98336 0.92994 0.98613 1.72316 1.28641 1.10769 1.23947 1.80366 0.87986 1.12768 1.58739 0.90215 0.90775 0.90231 0.81140 0.76123 0.88973 0.84938 0.91047 0.88467 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.46 36.01 0.38 -0.06 16 2 C -0.25 -2.44 6.58 -35.46 -0.23 -2.67 16 3 C -0.14 -1.82 9.92 -40.26 -0.40 -2.22 16 4 C 0.07 1.04 6.66 -84.07 -0.56 0.48 16 5 C 0.57 11.09 7.64 -12.43 -0.09 11.00 16 6 O -0.52 -11.61 14.07 5.29 0.07 -11.53 16 7 N -0.63 -12.36 5.29 -10.65 -0.06 -12.42 16 8 C 0.00 -0.03 6.30 -83.60 -0.53 -0.55 16 9 C -0.12 -2.75 9.90 -39.79 -0.39 -3.15 16 10 C -0.14 -3.70 8.61 -39.26 -0.34 -4.04 16 11 C 0.10 2.76 5.55 -106.80 -0.59 2.17 16 12 C -0.46 -12.36 9.02 -37.86 -0.34 -12.70 16 13 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 14 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 15 N -0.81 -21.27 10.60 55.55 0.59 -20.69 16 16 Si 0.92 19.12 29.56 -169.99 -5.03 14.10 16 17 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 18 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 C -0.21 -5.28 9.74 -39.26 -0.38 -5.66 16 21 C -0.08 -2.05 8.61 -39.79 -0.34 -2.40 16 22 N -0.52 -7.30 10.71 24.86 0.27 -7.04 16 23 S 0.45 4.33 23.20 -107.50 -2.49 1.84 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.17 2.13 7.99 -52.49 -0.42 1.71 16 28 H 0.40 6.95 8.29 -40.82 -0.34 6.61 16 29 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 30 H 0.13 3.56 6.13 -52.48 -0.32 3.24 16 31 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 32 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 33 H 0.11 2.60 6.22 -52.48 -0.33 2.27 16 LS Contribution 304.50 15.07 4.59 4.59 Total: -1.00 -30.57 304.50 -9.05 -39.62 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -3.07 Total: 9.64 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -3.92 Total: -18.12 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.80 Total: -40.14 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.07 Total: -11.53 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.10 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -2.49 Total: 1.84 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.57 -9.05 -39.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335715398.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.249 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds