Wall clock time and date at job start Tue Mar 31 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34992 * 127.27159 * 2 1 4 4 C 1.39505 * 111.68582 * 180.02562 * 3 2 1 5 5 C 1.47641 * 122.11254 * 180.02562 * 4 3 2 6 6 O 1.21588 * 119.99367 * 359.97438 * 5 4 3 7 7 N 1.34767 * 120.00350 * 180.27550 * 5 4 3 8 8 C 1.39127 * 120.00094 * 175.43732 * 7 5 4 9 9 C 1.39515 * 119.83672 * 215.02680 * 8 7 5 10 10 C 1.36352 * 120.16757 * 179.75739 * 9 8 7 11 11 C 1.40880 * 119.83057 * 0.51705 * 10 9 8 12 12 C 1.41136 * 120.16334 * 179.71519 * 11 10 9 13 13 H 1.07997 * 120.00603 * 214.80611 * 12 11 10 14 14 C 1.39907 * 119.99810 * 34.80711 * 12 11 10 15 15 N 1.30872 * 120.00312 * 355.56037 * 14 12 11 16 16 Si 1.86811 * 120.00107 * 175.56043 * 14 12 11 17 17 H 1.48501 * 109.46877 * 59.99749 * 16 14 12 18 18 H 1.48497 * 109.47069 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46856 * 300.00072 * 16 14 12 20 20 C 1.40877 * 119.67561 * 359.74289 * 11 10 9 21 21 C 1.36356 * 119.83303 * 359.97438 * 20 11 10 22 22 N 1.30627 * 115.78102 * 0.26680 * 4 3 2 23 23 S 1.56142 * 109.79918 * 359.58484 * 22 4 3 24 24 H 1.08998 * 109.47204 * 89.99753 * 1 2 3 25 25 H 1.08997 * 109.46749 * 209.99951 * 1 2 3 26 26 H 1.09004 * 109.46718 * 329.99349 * 1 2 3 27 27 H 1.08001 * 124.15355 * 0.02562 * 3 2 1 28 28 H 0.97000 * 119.99968 * 355.43360 * 7 5 4 29 29 H 1.08006 * 119.91513 * 0.02562 * 9 8 7 30 30 H 1.08005 * 120.09052 * 180.25694 * 10 9 8 31 31 H 0.97000 * 120.00087 * 180.02562 * 15 14 12 32 32 H 1.08007 * 120.08033 * 179.97438 * 20 11 10 33 33 H 1.08003 * 119.92018 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3246 1.0742 0.0000 4 6 3.6683 0.6994 -0.0006 5 6 4.7603 1.6931 -0.0001 6 8 4.5011 2.8810 0.0003 7 7 6.0442 1.2835 -0.0063 8 6 7.0716 2.2167 -0.1018 9 6 8.2327 1.9009 -0.8080 10 6 9.2418 2.8122 -0.9100 11 6 9.1144 4.0712 -0.2908 12 6 10.1570 5.0176 -0.3868 13 1 10.3655 5.6775 0.4423 14 6 10.9207 5.1007 -1.5561 15 7 10.7264 4.2448 -2.5269 16 14 12.2178 6.4336 -1.7319 17 1 13.2279 6.2865 -0.6533 18 1 12.8830 6.3058 -3.0533 19 1 11.5738 7.7677 -1.6282 20 6 7.9413 4.3808 0.4252 21 6 6.9381 3.4615 0.5137 22 7 3.8995 -0.5862 -0.0065 23 16 2.5472 -1.3668 -0.0008 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.9805 2.0980 0.0004 28 1 6.2519 0.3380 0.0558 29 1 8.3306 0.9338 -1.2787 30 1 10.1384 2.5680 -1.4605 31 1 11.2561 4.3023 -3.3375 32 1 7.8368 5.3439 0.9028 33 1 6.0383 3.6972 1.0626 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335715398.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:06 Heat of formation + Delta-G solvation = 6.936181 kcal Electronic energy + Delta-G solvation = -18982.906323 eV Core-core repulsion = 15906.167960 eV Total energy + Delta-G solvation = -3076.738363 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.75548 -40.08493 -38.79266 -36.27540 -34.87493 -34.10353 -31.53971 -30.90863 -29.19826 -27.67920 -25.85684 -23.47145 -22.70022 -21.68450 -21.05004 -19.39914 -19.14688 -18.73752 -17.67541 -17.01178 -16.71554 -16.04281 -15.77720 -15.46219 -14.88110 -14.78803 -14.48968 -14.05557 -14.02409 -13.78781 -13.62408 -13.50335 -13.27075 -12.90894 -12.79593 -12.55128 -12.25725 -11.88502 -11.79176 -11.43886 -11.26697 -10.94228 -10.70566 -10.49244 -9.79808 -9.52099 -8.78627 -8.52678 -6.35873 -0.52271 0.43385 0.53458 0.74664 0.94136 1.11163 1.39583 1.49956 1.52659 2.10645 2.20381 2.25119 2.78382 3.56668 3.65008 3.80670 4.17871 4.27863 4.34130 4.48778 4.68865 4.78482 4.88197 4.90201 5.04941 5.10139 5.20125 5.26858 5.30441 5.39145 5.65639 5.84744 5.96262 6.08984 6.33477 6.56393 6.64036 6.93515 6.93822 7.17400 8.40058 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.048532 B = 0.003029 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.797945 B = 9242.286671 C = 9519.045484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.234 4.234 3 C -0.164 4.164 4 C 0.039 3.961 5 C 0.571 3.429 6 O -0.557 6.557 7 N -0.627 5.627 8 C 0.010 3.990 9 C -0.116 4.116 10 C -0.158 4.158 11 C 0.071 3.929 12 C -0.495 4.495 13 H 0.076 0.924 14 C 0.027 3.973 15 N -0.840 5.840 16 Si 0.991 3.009 17 H -0.257 1.257 18 H -0.268 1.268 19 H -0.264 1.264 20 C -0.219 4.219 21 C -0.093 4.093 22 N -0.556 5.556 23 S 0.540 5.460 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.166 0.834 28 H 0.417 0.583 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.286 0.714 32 H 0.101 0.899 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.279 -12.717 2.786 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.365 4.365 3 C -0.196 4.196 4 C -0.133 4.133 5 C 0.355 3.645 6 O -0.436 6.436 7 N -0.270 5.270 8 C -0.083 4.083 9 C -0.136 4.136 10 C -0.178 4.178 11 C 0.069 3.931 12 C -0.526 4.526 13 H 0.094 0.906 14 C -0.185 4.185 15 N -0.468 5.468 16 Si 0.811 3.189 17 H -0.181 1.181 18 H -0.192 1.192 19 H -0.189 1.189 20 C -0.239 4.239 21 C -0.113 4.113 22 N -0.393 5.393 23 S 0.695 5.305 24 H 0.114 0.886 25 H 0.118 0.882 26 H 0.104 0.896 27 H 0.183 0.817 28 H 0.254 0.746 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -16.626 -13.962 2.539 21.859 hybrid contribution 0.567 2.318 -0.210 2.395 sum -16.059 -11.645 2.328 19.973 Atomic orbital electron populations 1.20443 0.83140 1.05240 1.04678 1.26554 1.05096 0.99153 1.05694 1.21276 0.89839 1.02880 1.05599 1.20748 0.94588 0.89008 1.08959 1.17834 0.82443 0.87283 0.76974 1.90755 1.83758 1.17713 1.51330 1.42724 1.03873 1.10290 1.70139 1.17362 0.90867 0.92530 1.07563 1.20536 0.93893 0.99935 0.99242 1.21175 0.99570 0.92990 1.04112 1.18053 0.92043 0.92302 0.90724 1.19729 1.14181 1.17241 1.01425 0.90576 1.26794 0.98552 0.98712 0.94458 1.69823 1.36870 1.33962 1.06107 0.85120 0.77336 0.77831 0.78565 1.18149 1.19245 1.18872 1.20939 0.94678 0.99320 1.08916 1.20519 0.98059 0.93663 0.99085 1.71939 1.32524 1.10376 1.24460 1.80018 0.85237 1.10346 1.54867 0.88611 0.88181 0.89598 0.81665 0.74597 0.86211 0.86083 0.90362 0.88052 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.46 71.24 0.75 0.14 16 2 C -0.23 -3.82 6.58 24.94 0.16 -3.66 16 3 C -0.16 -4.06 9.92 21.83 0.22 -3.85 16 4 C 0.04 1.20 6.66 42.11 0.28 1.48 16 5 C 0.57 22.48 7.64 86.73 0.66 23.14 16 6 O -0.56 -25.61 14.07 -3.99 -0.06 -25.67 16 7 N -0.63 -24.82 5.29 -305.88 -1.62 -26.44 16 8 C 0.01 0.48 6.30 38.60 0.24 0.72 16 9 C -0.12 -5.56 9.90 22.14 0.22 -5.34 16 10 C -0.16 -8.57 8.61 22.48 0.19 -8.37 16 11 C 0.07 4.02 5.55 -21.28 -0.12 3.90 16 12 C -0.50 -27.56 9.02 23.39 0.21 -27.35 16 13 H 0.08 4.06 7.85 -2.91 -0.02 4.04 16 14 C 0.03 1.40 5.42 85.24 0.46 1.86 16 15 N -0.84 -45.02 10.60 21.82 0.23 -44.79 16 16 Si 0.99 39.47 29.56 68.60 2.03 41.50 16 17 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 18 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 19 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 20 C -0.22 -11.70 9.74 22.48 0.22 -11.48 16 21 C -0.09 -4.73 8.61 22.14 0.19 -4.54 16 22 N -0.56 -14.51 10.71 -75.27 -0.81 -15.32 16 23 S 0.54 8.58 23.20 -56.49 -1.31 7.27 16 24 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.17 4.14 7.99 -2.91 -0.02 4.12 16 28 H 0.42 14.16 8.29 -92.71 -0.77 13.39 16 29 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 30 H 0.12 6.76 6.13 -2.91 -0.02 6.74 16 31 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 32 H 0.10 5.15 8.06 -2.91 -0.02 5.13 16 33 H 0.11 5.46 6.22 -2.91 -0.02 5.44 16 Total: -1.00 -69.09 304.50 2.55 -66.53 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.40 Total: 30.26 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 3.69 Total: -33.34 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -2.19 Total: -86.55 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.06 Total: -25.67 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Atomic # 16 Polarization: 8.58 SS G_CDS: -1.31 Total: 7.27 kcal Total: -69.09 2.55 -66.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335715398.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.470 kcal (2) G-P(sol) polarization free energy of solvation -69.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds