Wall clock time and date at job start Tue Mar 31 2020 05:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33831 * 124.52337 * 2 1 4 4 C 1.37455 * 115.10339 * 179.97438 * 3 2 1 5 5 C 1.36681 * 113.29691 * 0.02562 * 4 3 2 6 6 C 1.46534 * 125.46251 * 179.97438 * 5 4 3 7 7 O 1.21705 * 119.99813 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99906 * 180.02562 * 6 5 4 9 9 C 1.39359 * 119.99785 * 175.12806 * 8 6 5 10 10 C 1.38671 * 119.64991 * 184.89888 * 9 8 6 11 11 C 1.40812 * 118.67287 * 179.75798 * 10 9 8 12 12 C 1.41544 * 120.99966 * 180.27406 * 11 10 9 13 13 H 1.08000 * 120.00134 * 203.93577 * 12 11 10 14 14 C 1.40038 * 119.99729 * 23.93860 * 12 11 10 15 15 N 1.30742 * 119.99983 * 16.64763 * 14 12 11 16 16 Si 1.86801 * 119.99871 * 196.64789 * 14 12 11 17 17 H 1.48495 * 109.47220 * 89.99787 * 16 14 12 18 18 H 1.48501 * 109.47003 * 209.99997 * 16 14 12 19 19 H 1.48504 * 109.47134 * 329.99562 * 16 14 12 20 20 C 1.41169 * 118.00509 * 0.49780 * 11 10 9 21 21 C 1.36586 * 119.13160 * 359.75818 * 20 11 10 22 22 N 1.32062 * 121.26505 * 359.97438 * 21 20 11 23 23 S 1.70618 * 124.51932 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.47063 * 90.00102 * 1 2 3 25 25 H 1.08994 * 109.47057 * 210.00145 * 1 2 3 26 26 H 1.09005 * 109.47225 * 330.00273 * 1 2 3 27 27 H 1.07999 * 122.44545 * 0.24973 * 3 2 1 28 28 H 1.08002 * 123.35448 * 179.97438 * 4 3 2 29 29 H 0.97001 * 120.00134 * 355.12259 * 8 6 5 30 30 H 1.08008 * 120.66084 * 359.97438 * 10 9 8 31 31 H 0.96998 * 119.99695 * 180.02562 * 15 14 12 32 32 H 1.08002 * 120.43400 * 179.78144 * 20 11 10 33 33 H 1.08004 * 119.36792 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6215 0.8777 0.0006 5 6 3.9493 -0.4493 0.0005 6 6 5.3118 -0.9883 0.0004 7 8 6.2654 -0.2321 0.0010 8 7 5.5090 -2.3216 -0.0002 9 6 6.8006 -2.8349 -0.1027 10 6 6.9882 -4.2050 -0.2054 11 6 8.3017 -4.7009 -0.3132 12 6 8.5495 -6.0899 -0.4263 13 1 9.5052 -6.4941 -0.1268 14 6 7.5555 -6.9399 -0.9267 15 7 6.5408 -6.4430 -1.5846 16 14 7.6793 -8.7838 -0.6542 17 1 6.9989 -9.1433 0.6158 18 1 7.0286 -9.4958 -1.7832 19 1 9.1091 -9.1781 -0.5785 20 6 9.3642 -3.7716 -0.3001 21 6 9.0815 -2.4398 -0.1896 22 7 7.8367 -2.0089 -0.0958 23 16 2.4738 -1.4058 0.0006 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.8429 2.0965 0.0040 28 1 4.3549 1.6704 0.0002 29 1 4.7520 -2.9239 0.0708 30 1 6.1435 -4.8780 -0.2063 31 1 5.8521 -7.0318 -1.9309 32 1 10.3873 -4.1091 -0.3768 33 1 9.8916 -1.7255 -0.1788 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336077932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:22 Heat of formation + Delta-G solvation = 30.436771 kcal Electronic energy + Delta-G solvation = -19133.767672 eV Core-core repulsion = 16058.048371 eV Total energy + Delta-G solvation = -3075.719301 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.67031 -38.24567 -37.33789 -34.36307 -33.78929 -32.11210 -30.56911 -29.02383 -27.00370 -26.02520 -23.74412 -22.28799 -21.93362 -20.29875 -19.03916 -17.88277 -17.55939 -16.28805 -15.52202 -15.30910 -14.86737 -14.76896 -14.23897 -14.04775 -13.90068 -13.62870 -13.20572 -12.85933 -12.66209 -12.49268 -12.40232 -11.95756 -11.91091 -11.45958 -11.25698 -10.94409 -10.91987 -10.30701 -10.17428 -9.82745 -9.56053 -9.38478 -8.64929 -8.62165 -8.02635 -7.76621 -7.08365 -6.84607 -4.63972 0.54079 1.44014 1.86100 2.36495 2.73071 2.78764 3.00363 3.03717 3.22798 3.55061 3.74718 3.82884 4.62632 4.64964 4.98040 5.04498 5.24480 5.28900 5.49524 5.66403 5.69186 5.87975 5.98972 6.16927 6.34671 6.52886 6.61528 6.79313 6.92564 7.07750 7.35833 7.42580 7.72731 7.88579 8.15827 8.38115 8.66151 8.71409 8.80702 9.66184 10.03741 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.020621 B = 0.004203 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.527387 B = 6659.880460 C = 7938.149329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.206 4.206 3 C -0.153 4.153 4 C -0.062 4.062 5 C -0.252 4.252 6 C 0.573 3.427 7 O -0.468 6.468 8 N -0.652 5.652 9 C 0.339 3.661 10 C -0.244 4.244 11 C 0.144 3.856 12 C -0.454 4.454 13 H 0.083 0.917 14 C 0.078 3.922 15 N -0.786 5.786 16 Si 0.912 3.088 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.261 1.261 20 C -0.282 4.282 21 C 0.120 3.880 22 N -0.557 5.557 23 S 0.196 5.804 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.142 0.858 28 H 0.153 0.847 29 H 0.404 0.596 30 H 0.128 0.872 31 H 0.283 0.717 32 H 0.103 0.897 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.808 6.130 2.187 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.325 4.325 3 C -0.184 4.184 4 C -0.094 4.094 5 C -0.373 4.373 6 C 0.357 3.643 7 O -0.339 6.339 8 N -0.298 5.298 9 C 0.114 3.886 10 C -0.270 4.270 11 C 0.136 3.864 12 C -0.485 4.485 13 H 0.101 0.899 14 C -0.141 4.141 15 N -0.412 5.412 16 Si 0.736 3.264 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.306 4.306 21 C -0.033 4.033 22 N -0.276 5.276 23 S 0.463 5.537 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.160 0.840 28 H 0.170 0.830 29 H 0.239 0.761 30 H 0.146 0.854 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.832 6.020 2.113 14.331 hybrid contribution -0.022 -0.505 -0.094 0.515 sum -12.854 5.515 2.019 14.132 Atomic orbital electron populations 1.20363 0.87580 1.03292 1.02935 1.24207 1.01402 0.97944 1.08978 1.19927 0.92639 0.99400 1.06470 1.20728 0.96096 0.95221 0.97376 1.24862 0.96997 0.98050 1.17401 1.17041 0.86508 0.82618 0.78165 1.90908 1.40814 1.57056 1.45171 1.43255 1.07776 1.06466 1.72274 1.18131 0.83721 0.89368 0.97361 1.21547 0.99453 0.91484 1.14475 1.17563 0.90124 0.93216 0.85521 1.19602 1.00315 0.91315 1.37305 0.89866 1.25973 0.94140 1.01860 0.92155 1.69780 1.09255 1.38213 1.23907 0.86242 0.79894 0.81325 0.78899 1.19131 1.20190 1.18454 1.21669 0.98935 0.94048 1.15942 1.21482 0.92229 0.93497 0.96103 1.67213 0.98230 1.37848 1.24315 1.83075 0.94612 1.07674 1.68292 0.90542 0.91165 0.90472 0.84048 0.82971 0.76065 0.85420 0.90643 0.87925 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.31 36.00 0.37 -0.24 16 2 C -0.21 -2.20 6.28 -35.86 -0.23 -2.43 16 3 C -0.15 -1.73 9.99 -41.41 -0.41 -2.14 16 4 C -0.06 -0.86 10.01 -40.43 -0.40 -1.27 16 5 C -0.25 -4.04 6.45 -36.80 -0.24 -4.28 16 6 C 0.57 11.78 7.74 -12.92 -0.10 11.68 16 7 O -0.47 -11.32 15.09 5.18 0.08 -11.24 16 8 N -0.65 -13.66 5.38 -12.71 -0.07 -13.73 16 9 C 0.34 8.45 7.42 -154.75 -1.15 7.31 16 10 C -0.24 -6.26 8.63 -38.45 -0.33 -6.59 16 11 C 0.14 3.80 5.60 -106.55 -0.60 3.20 16 12 C -0.45 -11.63 9.12 -37.65 -0.34 -11.97 16 13 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 14 C 0.08 1.87 5.20 -17.34 -0.09 1.78 16 15 N -0.79 -19.29 10.92 55.55 0.61 -18.68 16 16 Si 0.91 17.75 29.59 -169.99 -5.03 12.72 16 17 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 18 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 19 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 20 C -0.28 -6.96 9.85 -39.07 -0.38 -7.34 16 21 C 0.12 2.93 11.10 -18.05 -0.20 2.73 16 22 N -0.56 -14.53 7.85 -12.77 -0.10 -14.63 16 23 S 0.20 2.42 22.11 -107.50 -2.38 0.04 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 29 H 0.40 7.20 7.82 -40.82 -0.32 6.88 16 30 H 0.13 3.24 6.21 -52.48 -0.33 2.91 16 31 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16 32 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 33 H 0.12 2.61 8.06 -52.48 -0.42 2.18 16 LS Contribution 306.85 15.07 4.62 4.62 Total: -1.00 -31.16 306.85 -9.52 -40.69 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -3.15 Total: 9.76 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -4.11 Total: -9.56 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.44 Total: -47.04 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.38 Total: 0.04 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.16 -9.52 -40.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336077932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.126 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds