Wall clock time and date at job start Tue Mar 31 2020 05:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33831 * 124.52337 * 2 1 4 4 C 1.37455 * 115.10339 * 179.97438 * 3 2 1 5 5 C 1.36681 * 113.29691 * 0.02562 * 4 3 2 6 6 C 1.46534 * 125.46251 * 179.97438 * 5 4 3 7 7 O 1.21705 * 119.99813 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99906 * 180.02562 * 6 5 4 9 9 C 1.39359 * 119.99785 * 175.12806 * 8 6 5 10 10 C 1.38671 * 119.64991 * 184.89888 * 9 8 6 11 11 C 1.40812 * 118.67287 * 179.75798 * 10 9 8 12 12 C 1.41544 * 120.99966 * 180.27406 * 11 10 9 13 13 H 1.08000 * 120.00134 * 203.93577 * 12 11 10 14 14 C 1.40038 * 119.99729 * 23.93860 * 12 11 10 15 15 N 1.30742 * 119.99983 * 16.64763 * 14 12 11 16 16 Si 1.86801 * 119.99871 * 196.64789 * 14 12 11 17 17 H 1.48495 * 109.47220 * 89.99787 * 16 14 12 18 18 H 1.48501 * 109.47003 * 209.99997 * 16 14 12 19 19 H 1.48504 * 109.47134 * 329.99562 * 16 14 12 20 20 C 1.41169 * 118.00509 * 0.49780 * 11 10 9 21 21 C 1.36586 * 119.13160 * 359.75818 * 20 11 10 22 22 N 1.32062 * 121.26505 * 359.97438 * 21 20 11 23 23 S 1.70618 * 124.51932 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.47063 * 90.00102 * 1 2 3 25 25 H 1.08994 * 109.47057 * 210.00145 * 1 2 3 26 26 H 1.09005 * 109.47225 * 330.00273 * 1 2 3 27 27 H 1.07999 * 122.44545 * 0.24973 * 3 2 1 28 28 H 1.08002 * 123.35448 * 179.97438 * 4 3 2 29 29 H 0.97001 * 120.00134 * 355.12259 * 8 6 5 30 30 H 1.08008 * 120.66084 * 359.97438 * 10 9 8 31 31 H 0.96998 * 119.99695 * 180.02562 * 15 14 12 32 32 H 1.08002 * 120.43400 * 179.78144 * 20 11 10 33 33 H 1.08004 * 119.36792 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6215 0.8777 0.0006 5 6 3.9493 -0.4493 0.0005 6 6 5.3118 -0.9883 0.0004 7 8 6.2654 -0.2321 0.0010 8 7 5.5090 -2.3216 -0.0002 9 6 6.8006 -2.8349 -0.1027 10 6 6.9882 -4.2050 -0.2054 11 6 8.3017 -4.7009 -0.3132 12 6 8.5495 -6.0899 -0.4263 13 1 9.5052 -6.4941 -0.1268 14 6 7.5555 -6.9399 -0.9267 15 7 6.5408 -6.4430 -1.5846 16 14 7.6793 -8.7838 -0.6542 17 1 6.9989 -9.1433 0.6158 18 1 7.0286 -9.4958 -1.7832 19 1 9.1091 -9.1781 -0.5785 20 6 9.3642 -3.7716 -0.3001 21 6 9.0815 -2.4398 -0.1896 22 7 7.8367 -2.0089 -0.0958 23 16 2.4738 -1.4058 0.0006 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.8429 2.0965 0.0040 28 1 4.3549 1.6704 0.0002 29 1 4.7520 -2.9239 0.0708 30 1 6.1435 -4.8780 -0.2063 31 1 5.8521 -7.0318 -1.9309 32 1 10.3873 -4.1091 -0.3768 33 1 9.8916 -1.7255 -0.1788 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336077932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:22 Heat of formation + Delta-G solvation = 12.416623 kcal Electronic energy + Delta-G solvation = -19134.549084 eV Core-core repulsion = 16058.048371 eV Total energy + Delta-G solvation = -3076.500713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.35039 -39.79851 -38.61907 -36.18015 -35.59476 -33.05878 -32.47143 -30.73799 -28.17868 -27.91247 -24.81140 -23.91321 -23.62116 -21.96495 -20.36021 -19.56189 -18.94132 -17.82931 -17.05413 -16.86692 -16.35393 -16.20834 -16.09840 -15.63547 -15.01120 -14.91528 -14.58541 -14.38074 -14.21522 -13.96165 -13.34170 -13.21910 -12.94900 -12.93569 -12.75292 -12.66655 -12.10638 -11.91523 -11.88617 -11.61591 -11.25136 -11.18820 -9.99106 -9.68790 -9.67427 -9.59514 -8.94422 -8.68058 -6.59316 -0.55823 0.41497 0.75915 0.87212 0.97051 1.41299 1.43600 1.54796 1.59016 1.98167 2.19323 2.21351 2.78882 3.59346 3.71764 3.85703 4.17888 4.26022 4.39028 4.67984 4.69946 4.75566 4.75799 4.89186 5.02142 5.06822 5.09275 5.18424 5.20763 5.41780 5.45259 5.56228 5.86940 6.06621 6.37217 6.50667 6.75829 6.79683 7.12177 7.77094 8.24297 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.020621 B = 0.004203 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.527387 B = 6659.880460 C = 7938.149329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.181 4.181 3 C -0.164 4.164 4 C -0.049 4.049 5 C -0.304 4.304 6 C 0.572 3.428 7 O -0.517 6.517 8 N -0.649 5.649 9 C 0.333 3.667 10 C -0.262 4.262 11 C 0.116 3.884 12 C -0.481 4.481 13 H 0.087 0.913 14 C 0.040 3.960 15 N -0.810 5.810 16 Si 0.990 3.010 17 H -0.260 1.260 18 H -0.266 1.266 19 H -0.258 1.258 20 C -0.295 4.295 21 C 0.114 3.886 22 N -0.583 5.583 23 S 0.217 5.783 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.174 0.826 28 H 0.148 0.852 29 H 0.416 0.584 30 H 0.125 0.875 31 H 0.294 0.706 32 H 0.119 0.881 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.286 5.627 2.225 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.301 4.301 3 C -0.193 4.193 4 C -0.083 4.083 5 C -0.424 4.424 6 C 0.359 3.641 7 O -0.392 6.392 8 N -0.295 5.295 9 C 0.108 3.892 10 C -0.287 4.287 11 C 0.107 3.893 12 C -0.512 4.512 13 H 0.105 0.895 14 C -0.178 4.178 15 N -0.436 5.436 16 Si 0.810 3.190 17 H -0.184 1.184 18 H -0.191 1.191 19 H -0.181 1.181 20 C -0.319 4.319 21 C -0.039 4.039 22 N -0.304 5.304 23 S 0.484 5.516 24 H 0.111 0.889 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.192 0.808 28 H 0.166 0.834 29 H 0.253 0.747 30 H 0.142 0.858 31 H 0.105 0.895 32 H 0.137 0.863 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.343 5.520 2.149 16.446 hybrid contribution 0.602 -0.285 -0.138 0.680 sum -14.741 5.234 2.012 15.771 Atomic orbital electron populations 1.20582 0.84551 1.04956 1.04411 1.24787 1.03183 0.96756 1.05365 1.20148 0.91143 1.01197 1.06821 1.20977 0.97653 0.94343 0.95307 1.24431 0.96116 0.99506 1.22381 1.17633 0.88113 0.81836 0.76478 1.90855 1.43028 1.57814 1.47511 1.43263 1.06849 1.07275 1.72132 1.18386 0.84980 0.89384 0.96481 1.21530 0.99337 0.91788 1.16063 1.17997 0.90924 0.94270 0.86067 1.19909 1.01390 0.91602 1.38269 0.89512 1.26868 0.93225 1.06621 0.91070 1.69814 1.09742 1.40414 1.23583 0.85087 0.80013 0.74817 0.79130 1.18427 1.19065 1.18122 1.21867 0.99478 0.94114 1.16408 1.21951 0.92597 0.94134 0.95174 1.67333 0.99033 1.38482 1.25529 1.82970 0.92750 1.07940 1.67901 0.88950 0.90058 0.88282 0.80831 0.83450 0.74674 0.85771 0.89517 0.86312 0.83207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 10.31 71.23 0.73 -0.14 16 2 C -0.18 -3.29 6.28 24.68 0.15 -3.13 16 3 C -0.16 -3.23 9.99 21.08 0.21 -3.02 16 4 C -0.05 -1.33 10.01 21.72 0.22 -1.12 16 5 C -0.30 -9.82 6.45 24.07 0.16 -9.66 16 6 C 0.57 24.50 7.74 86.41 0.67 25.17 16 7 O -0.52 -26.24 15.09 -4.36 -0.07 -26.31 16 8 N -0.65 -28.31 5.38 -312.34 -1.68 -29.99 16 9 C 0.33 17.31 7.42 132.80 0.99 18.29 16 10 C -0.26 -13.92 8.63 23.00 0.20 -13.72 16 11 C 0.12 6.28 5.60 -21.11 -0.12 6.16 16 12 C -0.48 -24.99 9.12 23.52 0.21 -24.78 16 13 H 0.09 4.29 7.90 -2.91 -0.02 4.27 16 14 C 0.04 1.90 5.20 85.29 0.44 2.34 16 15 N -0.81 -39.88 10.92 21.84 0.24 -39.64 16 16 Si 0.99 35.63 29.59 68.60 2.03 37.66 16 17 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 18 H -0.27 -9.07 7.11 99.48 0.71 -8.37 16 19 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 20 C -0.29 -14.93 9.85 22.60 0.22 -14.70 16 21 C 0.11 5.70 11.10 84.27 0.94 6.64 16 22 N -0.58 -31.59 7.85 -194.32 -1.53 -33.12 16 23 S 0.22 5.05 22.11 -56.49 -1.25 3.80 16 24 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 28 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 29 H 0.42 15.39 7.82 -92.71 -0.72 14.66 16 30 H 0.12 6.53 6.21 -2.91 -0.02 6.51 16 31 H 0.29 12.84 8.29 -92.71 -0.77 12.07 16 32 H 0.12 5.43 8.06 -2.91 -0.02 5.41 16 33 H 0.15 6.42 8.06 -2.91 -0.02 6.40 16 Total: -1.00 -69.85 306.85 3.20 -66.65 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.43 Total: 32.61 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 5.02 Total: -11.66 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -2.97 Total: -102.75 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.07 Total: -26.31 kcal Atomic # 14 Polarization: 35.63 SS G_CDS: 2.03 Total: 37.66 kcal Atomic # 16 Polarization: 5.05 SS G_CDS: -1.25 Total: 3.80 kcal Total: -69.85 3.20 -66.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336077932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.064 kcal (2) G-P(sol) polarization free energy of solvation -69.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds