Wall clock time and date at job start Tue Mar 31 2020 05:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31346 * 1 3 3 Si 1.86792 * 119.99757 * 2 1 4 4 H 1.48500 * 109.47412 * 239.99756 * 3 2 1 5 5 H 1.48498 * 109.47468 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46878 * 120.00004 * 3 2 1 7 7 C 1.39091 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99561 * 173.22804 * 7 2 1 9 9 N 1.36778 * 120.00224 * 353.22311 * 7 2 1 10 10 C 1.34780 * 119.99555 * 147.00226 * 9 7 2 11 11 O 1.21672 * 120.00453 * 5.02739 * 10 9 7 12 12 C 1.47029 * 119.99762 * 185.03406 * 10 9 7 13 13 C 1.33933 * 124.65783 * 185.53186 * 12 10 9 14 14 C 1.40048 * 115.48144 * 179.97438 * 13 12 10 15 15 C 1.41746 * 129.98065 * 180.02562 * 14 13 12 16 16 C 1.36043 * 119.33462 * 179.97438 * 15 14 13 17 17 N 1.32312 * 121.57539 * 359.97438 * 16 15 14 18 18 C 1.31370 * 122.06026 * 0.02562 * 17 16 15 19 19 C 1.39697 * 120.60719 * 0.02562 * 18 17 16 20 20 S 1.75530 * 124.65578 * 5.50200 * 12 10 9 21 21 C 1.46496 * 120.00204 * 327.00371 * 9 7 2 22 22 C 1.52994 * 117.50071 * 315.69448 * 21 9 7 23 23 C 1.53002 * 117.49739 * 247.07005 * 21 9 7 24 24 H 0.97000 * 120.00170 * 5.03512 * 1 2 3 25 25 H 1.07996 * 122.25744 * 0.24787 * 13 12 10 26 26 H 1.08000 * 120.33633 * 359.97438 * 15 14 13 27 27 H 1.07996 * 119.20873 * 179.97438 * 16 15 14 28 28 H 1.07999 * 119.69839 * 179.97438 * 18 17 16 29 29 H 1.09006 * 115.54932 * 101.39976 * 21 9 7 30 30 H 1.09008 * 117.49809 * 359.97438 * 22 21 9 31 31 H 1.09001 * 117.50664 * 145.01941 * 22 21 9 32 32 H 1.09000 * 117.49845 * 214.97743 * 23 21 9 33 33 H 1.08990 * 117.49843 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 3.1012 1.6965 -1.2124 5 1 1.2824 2.7464 0.0006 6 1 3.1011 1.6964 1.2125 7 6 2.0089 -1.2046 -0.0005 8 1 3.0832 -1.2078 -0.1108 9 7 1.3321 -2.3850 0.1387 10 6 1.7786 -3.4950 -0.4820 11 8 2.8319 -3.4698 -1.0906 12 6 0.9929 -4.7363 -0.4236 13 6 1.3953 -5.9162 -0.9134 14 6 0.4926 -6.9748 -0.7526 15 6 0.6009 -8.3319 -1.1470 16 6 -0.4216 -9.1879 -0.8776 17 7 -1.5171 -8.7845 -0.2548 18 6 -1.6789 -7.5408 0.1363 19 6 -0.6850 -6.5871 -0.0960 20 16 -0.6011 -4.8757 0.2980 21 6 0.1220 -2.4429 0.9624 22 6 0.1569 -1.7376 2.3196 23 6 0.1832 -3.2659 2.2508 24 1 -0.4850 0.8368 -0.0737 25 1 2.3532 -6.0437 -1.3955 26 1 1.4862 -8.6830 -1.6562 27 1 -0.3372 -10.2214 -1.1794 28 1 -2.5891 -7.2529 0.6414 29 1 -0.8204 -2.4347 0.4146 30 1 1.0804 -1.2308 2.5999 31 1 -0.7626 -1.2651 2.6651 32 1 -0.7191 -3.7987 2.5509 33 1 1.1238 -3.7638 2.4857 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336244067.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:21 Heat of formation + Delta-G solvation = 61.567838 kcal Electronic energy + Delta-G solvation = -20084.650187 eV Core-core repulsion = 17010.280831 eV Total energy + Delta-G solvation = -3074.369356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.10266 -39.03539 -36.64152 -35.38130 -33.31185 -31.43647 -31.22709 -29.98024 -26.03383 -24.22402 -23.55550 -22.08645 -21.72115 -21.02692 -19.17021 -17.79343 -17.11326 -16.38561 -15.84190 -15.76641 -15.40877 -14.50729 -14.30197 -14.23481 -14.10422 -13.51663 -13.47109 -13.32034 -12.69050 -12.22687 -11.67298 -11.55804 -11.35977 -11.26083 -11.03264 -10.81240 -10.53193 -10.41211 -10.14628 -9.70916 -9.61888 -9.35113 -9.09115 -8.72800 -8.59034 -7.91379 -7.41109 -6.55544 -4.13564 0.57979 1.19937 1.81176 2.26698 2.37758 3.09943 3.13744 3.16504 3.87024 3.90346 4.09738 4.41859 4.43897 4.55653 4.81490 4.92412 5.07276 5.13392 5.41320 5.52769 5.63644 5.72424 5.76108 5.81279 5.92479 6.13438 6.14212 6.43794 6.54097 6.56272 6.71574 6.73640 6.89972 7.34529 7.92564 8.04926 8.23085 8.91515 9.08847 9.68479 10.49927 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.033203 B = 0.005042 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.089726 B = 5552.256457 C = 6094.158528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.046 3.954 3 Si 0.928 3.072 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.309 4.309 8 H 0.100 0.900 9 N -0.397 5.397 10 C 0.505 3.495 11 O -0.569 6.569 12 C -0.152 4.152 13 C -0.111 4.111 14 C -0.032 4.032 15 C -0.133 4.133 16 C 0.068 3.932 17 N -0.486 5.486 18 C 0.158 3.842 19 C -0.250 4.250 20 S 0.196 5.804 21 C 0.094 3.906 22 C -0.124 4.124 23 C -0.213 4.213 24 H 0.274 0.726 25 H 0.149 0.851 26 H 0.134 0.866 27 H 0.152 0.848 28 H 0.156 0.844 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.173 -8.762 3.216 10.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.161 4.161 3 Si 0.753 3.247 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.437 4.437 8 H 0.118 0.882 9 N -0.113 5.113 10 C 0.294 3.706 11 O -0.454 6.454 12 C -0.274 4.274 13 C -0.143 4.143 14 C -0.048 4.048 15 C -0.155 4.155 16 C -0.081 4.081 17 N -0.196 5.196 18 C -0.012 4.012 19 C -0.368 4.368 20 S 0.466 5.534 21 C -0.014 4.014 22 C -0.162 4.162 23 C -0.254 4.254 24 H 0.084 0.916 25 H 0.167 0.833 26 H 0.151 0.849 27 H 0.169 0.831 28 H 0.173 0.827 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.403 -8.220 3.796 10.544 hybrid contribution 1.877 0.474 -1.009 2.183 sum -3.526 -7.745 2.787 8.955 Atomic orbital electron populations 1.69799 1.06098 1.28529 1.44898 1.25464 0.95540 0.99836 0.95310 0.85969 0.79111 0.80154 0.79434 1.19516 1.20654 1.19562 1.19551 0.92847 0.81515 1.49777 0.88223 1.42929 1.22319 1.07870 1.38172 1.16939 0.87418 0.82494 0.83774 1.90666 1.23732 1.83987 1.47045 1.24509 0.99183 0.99050 1.04619 1.19935 1.01105 0.89967 1.03292 1.18328 0.93413 0.94633 0.98384 1.21706 1.00646 0.92022 1.01128 1.21954 0.89436 0.99860 0.96896 1.67616 1.23776 1.16829 1.11341 1.22175 0.96481 0.87115 0.95448 1.24959 1.00258 1.04074 1.07467 1.85063 1.14167 0.97703 1.56464 1.21281 0.90439 1.03408 0.86312 1.22699 1.02989 0.92120 0.98414 1.23586 1.03038 0.95560 1.03182 0.91575 0.83298 0.84857 0.83107 0.82654 0.86511 0.88515 0.89073 0.88196 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.95 10.99 55.50 0.61 -20.34 16 2 C 0.05 1.12 4.85 -17.44 -0.08 1.03 16 3 Si 0.93 19.36 29.56 -169.99 -5.03 14.34 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.31 -8.06 8.58 -15.03 -0.13 -8.19 16 8 H 0.10 2.72 7.55 -52.49 -0.40 2.33 16 9 N -0.40 -9.70 2.89 -109.09 -0.32 -10.01 16 10 C 0.51 12.42 7.53 -12.70 -0.10 12.33 16 11 O -0.57 -15.74 16.53 5.21 0.09 -15.65 16 12 C -0.15 -3.08 6.04 -37.53 -0.23 -3.31 16 13 C -0.11 -2.05 9.81 -40.42 -0.40 -2.44 16 14 C -0.03 -0.52 5.91 -107.11 -0.63 -1.15 16 15 C -0.13 -1.82 10.13 -39.03 -0.40 -2.21 16 16 C 0.07 0.88 11.06 -18.13 -0.20 0.68 16 17 N -0.49 -7.04 10.34 -13.41 -0.14 -7.17 16 18 C 0.16 2.24 11.24 -17.20 -0.19 2.05 16 19 C -0.25 -3.97 6.54 -38.27 -0.25 -4.22 16 20 S 0.20 3.25 16.15 -107.50 -1.74 1.51 16 21 C 0.09 1.94 2.19 -67.94 -0.15 1.79 16 22 C -0.12 -2.32 8.73 -26.73 -0.23 -2.56 16 23 C -0.21 -3.61 7.63 -26.73 -0.20 -3.82 16 24 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 25 H 0.15 2.68 7.97 -52.49 -0.42 2.27 16 26 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 27 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 28 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.12 2.48 7.16 -51.93 -0.37 2.11 16 30 H 0.10 1.95 7.88 -51.92 -0.41 1.54 16 31 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.10 1.42 7.33 -51.93 -0.38 1.04 16 33 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 294.67 15.07 4.44 4.44 Total: -1.00 -29.25 294.67 -8.49 -37.75 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -3.23 Total: 5.17 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -3.19 Total: -10.02 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.16 Total: -37.53 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.09 Total: -15.65 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.34 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.74 Total: 1.51 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.25 -8.49 -37.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336244067.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.313 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds