Wall clock time and date at job start Tue Mar 31 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28470 * 124.44137 * 2 1 4 4 C 1.32722 * 117.40856 * 180.02562 * 3 2 1 5 5 C 1.46890 * 123.36503 * 180.02562 * 4 3 2 6 6 O 1.21710 * 120.00135 * 183.08766 * 5 4 3 7 7 N 1.34777 * 119.99853 * 3.08453 * 5 4 3 8 8 C 1.36887 * 119.99884 * 180.02562 * 7 5 4 9 9 H 1.07997 * 120.00415 * 359.97438 * 8 7 5 10 10 C 1.39011 * 120.00076 * 180.02562 * 8 7 5 11 11 N 1.31403 * 119.99760 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00133 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47052 * 89.99692 * 12 10 8 14 14 H 1.48503 * 109.47308 * 210.00183 * 12 10 8 15 15 H 1.48507 * 109.47036 * 329.99913 * 12 10 8 16 16 C 1.38013 * 113.27240 * 0.02562 * 4 3 2 17 17 C 1.47620 * 126.20833 * 179.97438 * 16 4 3 18 18 C 1.39676 * 120.14786 * 236.86445 * 17 16 4 19 19 C 1.37937 * 119.83674 * 179.97438 * 18 17 16 20 20 C 1.38376 * 120.15871 * 0.02562 * 19 18 17 21 21 C 1.38384 * 120.30917 * 359.97438 * 20 19 18 22 22 C 1.37926 * 120.15477 * 0.02562 * 21 20 19 23 23 S 1.70821 * 124.44453 * 180.29208 * 2 1 3 24 24 H 1.08999 * 109.47405 * 90.02403 * 1 2 3 25 25 H 1.09000 * 109.46958 * 210.02118 * 1 2 3 26 26 H 1.08998 * 109.46890 * 330.02345 * 1 2 3 27 27 H 0.97001 * 120.00341 * 0.02562 * 7 5 4 28 28 H 0.96999 * 119.99429 * 179.97438 * 11 10 8 29 29 H 1.07994 * 120.08310 * 359.97438 * 18 17 16 30 30 H 1.08002 * 119.92140 * 180.27234 * 19 18 17 31 31 H 1.07990 * 119.84538 * 179.97438 * 20 19 18 32 32 H 1.08000 * 119.91975 * 180.02562 * 21 20 19 33 33 H 1.08003 * 120.07733 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2336 1.0595 0.0000 4 6 3.5508 0.8970 -0.0005 5 6 4.5028 2.0157 0.0000 6 8 5.6987 1.7971 -0.0573 7 7 4.0519 3.2842 0.0638 8 6 4.9390 4.3267 0.0637 9 1 6.0002 4.1328 0.0129 10 6 4.4740 5.6350 0.1301 11 7 3.1829 5.8710 0.1924 12 14 5.6846 7.0576 0.1307 13 1 5.9472 7.4847 -1.2671 14 1 5.1126 8.1941 0.8965 15 1 6.9566 6.6249 0.7633 16 6 3.9368 -0.4281 -0.0016 17 6 5.3242 -0.9322 -0.0029 18 6 5.7573 -1.7917 -1.0151 19 6 7.0553 -2.2585 -1.0104 20 6 7.9274 -1.8777 -0.0058 21 6 7.5050 -1.0264 1.0002 22 6 6.2099 -0.5519 1.0080 23 16 2.4732 -1.4087 -0.0072 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 3.0988 3.4584 0.1098 28 1 2.8585 6.7840 0.2391 29 1 5.0777 -2.0901 -1.7995 30 1 7.3929 -2.9197 -1.7948 31 1 8.9423 -2.2465 -0.0068 32 1 8.1910 -0.7329 1.7809 33 1 5.8814 0.1121 1.7939 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336311687.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:12 Heat of formation + Delta-G solvation = 27.887160 kcal Electronic energy + Delta-G solvation = -19616.106585 eV Core-core repulsion = 16540.276724 eV Total energy + Delta-G solvation = -3075.829860 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.76295 -38.41991 -37.40367 -34.10811 -32.59130 -31.41687 -30.60529 -30.45795 -27.16204 -25.84990 -23.73417 -22.15355 -21.89845 -20.58247 -18.76489 -18.04643 -17.63847 -16.49771 -15.42884 -15.15825 -14.98323 -14.70510 -14.28965 -14.02111 -13.71086 -13.34446 -13.15372 -13.03168 -12.83599 -12.38468 -12.16749 -12.05753 -11.73064 -11.43537 -11.15848 -11.00880 -10.76357 -10.45658 -10.32528 -9.61044 -9.44526 -9.25456 -8.82213 -8.59586 -8.35925 -8.04640 -7.83119 -6.56612 -3.87117 0.66554 1.36143 1.75191 1.84068 2.13285 2.66816 3.17932 3.20683 3.26779 4.06883 4.16316 4.31310 4.36571 4.98205 5.13365 5.19527 5.27169 5.28624 5.30017 5.44611 5.50593 5.62032 5.75720 5.90335 5.93652 6.08006 6.24678 6.38621 6.61881 6.75894 6.84543 6.94367 7.31260 7.40941 7.88900 8.02666 8.53823 9.04631 9.45981 10.01387 10.59232 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013541 B = 0.006096 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.277638 B = 4592.434604 C = 6445.391076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.039 3.961 3 N -0.448 5.448 4 C 0.068 3.932 5 C 0.487 3.513 6 O -0.583 6.583 7 N -0.523 5.523 8 C -0.291 4.291 9 H 0.110 0.890 10 C 0.024 3.976 11 N -0.879 5.879 12 Si 0.936 3.064 13 H -0.275 1.275 14 H -0.281 1.281 15 H -0.266 1.266 16 C -0.157 4.157 17 C 0.003 3.997 18 C -0.105 4.105 19 C -0.131 4.131 20 C -0.117 4.117 21 C -0.124 4.124 22 C -0.040 4.040 23 S 0.109 5.891 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.403 0.597 28 H 0.276 0.724 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.964 -14.627 0.266 14.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.241 4.241 3 N -0.164 5.164 4 C -0.067 4.067 5 C 0.272 3.728 6 O -0.469 6.469 7 N -0.156 5.156 8 C -0.422 4.422 9 H 0.127 0.873 10 C -0.180 4.180 11 N -0.518 5.518 12 Si 0.762 3.238 13 H -0.201 1.201 14 H -0.207 1.207 15 H -0.191 1.191 16 C -0.280 4.280 17 C 0.000 4.000 18 C -0.125 4.125 19 C -0.149 4.149 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.061 4.061 23 S 0.368 5.632 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.238 0.762 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.887 -15.079 0.236 15.199 hybrid contribution 0.408 1.716 -0.103 1.767 sum -1.479 -13.363 0.133 13.445 Atomic orbital electron populations 1.20432 0.85343 1.04030 1.03707 1.26767 1.01603 0.90802 1.04889 1.66150 1.04672 1.31144 1.14438 1.21317 0.88751 0.93591 1.03015 1.16491 0.86715 0.81733 0.87884 1.90685 1.14434 1.83505 1.58236 1.41882 1.10646 1.03953 1.59124 1.19896 0.91888 0.84144 1.46253 0.87270 1.25455 0.96782 0.99137 0.96667 1.69657 1.12743 1.22370 1.47035 0.85766 0.79939 0.79542 0.78565 1.20089 1.20654 1.19082 1.24524 0.96673 0.94364 1.12467 1.17625 0.89316 0.97239 0.95849 1.21139 0.96362 0.97540 0.97422 1.20867 0.93588 1.01381 0.99050 1.21119 0.99117 0.98373 0.94950 1.20983 0.95759 0.98226 0.99250 1.21092 0.92747 0.95084 0.97145 1.83535 0.97483 1.12457 1.69711 0.89803 0.90425 0.89124 0.76223 0.91356 0.86559 0.86362 0.86528 0.86179 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.45 36.00 0.38 -0.45 16 2 C 0.04 0.61 7.32 -13.68 -0.10 0.51 16 3 N -0.45 -9.10 9.97 -8.17 -0.08 -9.18 16 4 C 0.07 1.50 6.77 -84.06 -0.57 0.93 16 5 C 0.49 12.65 7.70 -12.76 -0.10 12.55 16 6 O -0.58 -16.05 13.06 5.18 0.07 -15.98 16 7 N -0.52 -14.25 5.28 -12.11 -0.06 -14.32 16 8 C -0.29 -8.22 9.68 -15.01 -0.15 -8.36 16 9 H 0.11 3.16 7.15 -52.49 -0.38 2.78 16 10 C 0.02 0.65 5.50 -17.45 -0.10 0.55 16 11 N -0.88 -24.06 13.05 55.50 0.72 -23.34 16 12 Si 0.94 20.75 29.55 -169.99 -5.02 15.72 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 15 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 16 C -0.16 -3.01 6.03 -35.84 -0.22 -3.22 16 17 C 0.00 0.05 4.91 -105.00 -0.52 -0.47 16 18 C -0.10 -1.69 9.79 -39.16 -0.38 -2.07 16 19 C -0.13 -1.85 10.03 -39.64 -0.40 -2.25 16 20 C -0.12 -1.65 10.04 -39.48 -0.40 -2.04 16 21 C -0.12 -1.97 10.03 -39.64 -0.40 -2.36 16 22 C -0.04 -0.75 7.59 -39.16 -0.30 -1.05 16 23 S 0.11 1.59 23.13 -107.50 -2.49 -0.89 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.40 10.94 7.42 -40.82 -0.30 10.63 16 28 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.12 2.38 7.87 -52.48 -0.41 1.96 16 LS Contribution 308.60 15.07 4.65 4.65 Total: -1.00 -31.68 308.60 -8.63 -40.32 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -3.19 Total: 10.76 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -3.24 Total: -7.74 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.58 Total: -46.84 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.07 Total: -15.98 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.49 Total: -0.89 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.68 -8.63 -40.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336311687.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.204 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds