Wall clock time and date at job start Tue Mar 31 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28470 * 124.44137 * 2 1 4 4 C 1.32722 * 117.40856 * 180.02562 * 3 2 1 5 5 C 1.46890 * 123.36503 * 180.02562 * 4 3 2 6 6 O 1.21710 * 120.00135 * 183.08766 * 5 4 3 7 7 N 1.34777 * 119.99853 * 3.08453 * 5 4 3 8 8 C 1.36887 * 119.99884 * 180.02562 * 7 5 4 9 9 H 1.07997 * 120.00415 * 359.97438 * 8 7 5 10 10 C 1.39011 * 120.00076 * 180.02562 * 8 7 5 11 11 N 1.31403 * 119.99760 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00133 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47052 * 89.99692 * 12 10 8 14 14 H 1.48503 * 109.47308 * 210.00183 * 12 10 8 15 15 H 1.48507 * 109.47036 * 329.99913 * 12 10 8 16 16 C 1.38013 * 113.27240 * 0.02562 * 4 3 2 17 17 C 1.47620 * 126.20833 * 179.97438 * 16 4 3 18 18 C 1.39676 * 120.14786 * 236.86445 * 17 16 4 19 19 C 1.37937 * 119.83674 * 179.97438 * 18 17 16 20 20 C 1.38376 * 120.15871 * 0.02562 * 19 18 17 21 21 C 1.38384 * 120.30917 * 359.97438 * 20 19 18 22 22 C 1.37926 * 120.15477 * 0.02562 * 21 20 19 23 23 S 1.70821 * 124.44453 * 180.29208 * 2 1 3 24 24 H 1.08999 * 109.47405 * 90.02403 * 1 2 3 25 25 H 1.09000 * 109.46958 * 210.02118 * 1 2 3 26 26 H 1.08998 * 109.46890 * 330.02345 * 1 2 3 27 27 H 0.97001 * 120.00341 * 0.02562 * 7 5 4 28 28 H 0.96999 * 119.99429 * 179.97438 * 11 10 8 29 29 H 1.07994 * 120.08310 * 359.97438 * 18 17 16 30 30 H 1.08002 * 119.92140 * 180.27234 * 19 18 17 31 31 H 1.07990 * 119.84538 * 179.97438 * 20 19 18 32 32 H 1.08000 * 119.91975 * 180.02562 * 21 20 19 33 33 H 1.08003 * 120.07733 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2336 1.0595 0.0000 4 6 3.5508 0.8970 -0.0005 5 6 4.5028 2.0157 0.0000 6 8 5.6987 1.7971 -0.0573 7 7 4.0519 3.2842 0.0638 8 6 4.9390 4.3267 0.0637 9 1 6.0002 4.1328 0.0129 10 6 4.4740 5.6350 0.1301 11 7 3.1829 5.8710 0.1924 12 14 5.6846 7.0576 0.1307 13 1 5.9472 7.4847 -1.2671 14 1 5.1126 8.1941 0.8965 15 1 6.9566 6.6249 0.7633 16 6 3.9368 -0.4281 -0.0016 17 6 5.3242 -0.9322 -0.0029 18 6 5.7573 -1.7917 -1.0151 19 6 7.0553 -2.2585 -1.0104 20 6 7.9274 -1.8777 -0.0058 21 6 7.5050 -1.0264 1.0002 22 6 6.2099 -0.5519 1.0080 23 16 2.4732 -1.4087 -0.0072 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 3.0988 3.4584 0.1098 28 1 2.8585 6.7840 0.2391 29 1 5.0777 -2.0901 -1.7995 30 1 7.3929 -2.9197 -1.7948 31 1 8.9423 -2.2465 -0.0068 32 1 8.1910 -0.7329 1.7809 33 1 5.8814 0.1121 1.7939 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336311687.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:12 Heat of formation + Delta-G solvation = 7.169270 kcal Electronic energy + Delta-G solvation = -19617.004980 eV Core-core repulsion = 16540.276724 eV Total energy + Delta-G solvation = -3076.728255 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.32232 -39.68592 -39.27136 -36.11126 -33.92138 -33.39836 -31.83342 -31.69486 -28.53905 -27.66244 -25.38519 -23.39926 -23.16900 -22.20893 -20.37890 -19.90207 -19.31299 -17.78449 -17.04136 -16.78969 -16.42908 -16.31163 -15.79492 -15.55665 -15.13242 -15.02225 -14.57433 -14.28837 -14.24999 -13.76119 -13.56456 -13.26219 -13.16120 -12.94646 -12.88848 -12.49441 -12.20486 -12.13493 -11.99128 -11.58193 -10.79488 -10.76733 -10.45114 -10.13656 -9.90869 -9.74469 -9.23305 -8.57070 -6.02132 -0.71519 0.03896 0.47497 0.58200 0.76533 1.08016 1.37917 1.45348 1.52971 2.24280 2.44923 2.86996 2.99558 3.23589 3.32569 3.78531 3.97830 4.06295 4.14623 4.28017 4.35947 4.58268 4.63069 4.70015 4.71899 4.86895 5.05301 5.15378 5.17958 5.31102 5.53882 5.60582 5.66057 5.87574 6.10840 6.41771 6.65348 6.99131 7.42990 7.97931 8.60245 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013541 B = 0.006096 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.277638 B = 4592.434604 C = 6445.391076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.032 3.968 3 N -0.489 5.489 4 C 0.026 3.974 5 C 0.489 3.511 6 O -0.606 6.606 7 N -0.542 5.542 8 C -0.335 4.335 9 H 0.089 0.911 10 C -0.013 4.013 11 N -0.911 5.911 12 Si 1.004 2.996 13 H -0.267 1.267 14 H -0.267 1.267 15 H -0.268 1.268 16 C -0.162 4.162 17 C -0.030 4.030 18 C -0.113 4.113 19 C -0.124 4.124 20 C -0.110 4.110 21 C -0.133 4.133 22 C -0.071 4.071 23 S 0.218 5.782 24 H 0.104 0.896 25 H 0.113 0.887 26 H 0.086 0.914 27 H 0.399 0.601 28 H 0.282 0.718 29 H 0.134 0.866 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.136 0.864 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.051 -17.322 -0.589 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.246 4.246 3 N -0.205 5.205 4 C -0.108 4.108 5 C 0.275 3.725 6 O -0.493 6.493 7 N -0.175 5.175 8 C -0.464 4.464 9 H 0.107 0.893 10 C -0.214 4.214 11 N -0.550 5.550 12 Si 0.826 3.174 13 H -0.192 1.192 14 H -0.191 1.191 15 H -0.192 1.192 16 C -0.286 4.286 17 C -0.033 4.033 18 C -0.132 4.132 19 C -0.142 4.142 20 C -0.128 4.128 21 C -0.151 4.151 22 C -0.091 4.091 23 S 0.478 5.522 24 H 0.123 0.877 25 H 0.132 0.868 26 H 0.105 0.895 27 H 0.233 0.767 28 H 0.092 0.908 29 H 0.152 0.848 30 H 0.176 0.824 31 H 0.173 0.827 32 H 0.154 0.846 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.996 -17.810 -0.617 17.932 hybrid contribution 0.407 2.165 0.161 2.209 sum -1.589 -15.645 -0.456 15.732 Atomic orbital electron populations 1.20711 0.81798 1.05624 1.05488 1.27669 1.03719 0.90788 1.02446 1.66103 1.04072 1.33553 1.16801 1.20807 0.89432 0.93354 1.07241 1.17156 0.87312 0.82411 0.85625 1.90628 1.15903 1.84320 1.58444 1.41883 1.10148 1.04383 1.61117 1.19865 0.91283 0.85560 1.49718 0.89336 1.26324 0.98685 1.00945 0.95435 1.69731 1.14154 1.23218 1.47891 0.84778 0.77436 0.76256 0.78924 1.19229 1.19097 1.19229 1.25021 0.99464 0.94784 1.09282 1.17874 0.89359 0.98889 0.97197 1.21428 0.97868 0.96972 0.96959 1.21365 0.92522 1.00746 0.99554 1.21582 1.00861 0.96773 0.93620 1.21270 0.94831 0.98494 1.00548 1.21037 0.94491 0.96131 0.97461 1.83076 0.92966 1.09147 1.67015 0.87750 0.86824 0.89519 0.76685 0.90801 0.84804 0.82418 0.82712 0.84645 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.45 71.24 0.74 -0.72 16 2 C 0.03 0.98 7.32 88.60 0.65 1.63 16 3 N -0.49 -20.30 9.97 -179.75 -1.79 -22.09 16 4 C 0.03 1.19 6.77 41.22 0.28 1.47 16 5 C 0.49 27.15 7.70 86.51 0.67 27.81 16 6 O -0.61 -35.60 13.06 -4.38 -0.06 -35.65 16 7 N -0.54 -31.65 5.28 -310.43 -1.64 -33.28 16 8 C -0.33 -20.13 9.68 84.09 0.81 -19.31 16 9 H 0.09 5.52 7.15 -2.91 -0.02 5.50 16 10 C -0.01 -0.70 5.50 84.94 0.47 -0.24 16 11 N -0.91 -51.75 13.05 21.68 0.28 -51.46 16 12 Si 1.00 43.82 29.55 68.60 2.03 45.85 16 13 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 14 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 15 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 16 C -0.16 -6.22 6.03 24.70 0.15 -6.07 16 17 C -0.03 -1.14 4.91 -20.11 -0.10 -1.23 16 18 C -0.11 -3.41 9.79 22.55 0.22 -3.19 16 19 C -0.12 -3.09 10.03 22.23 0.22 -2.87 16 20 C -0.11 -2.78 10.04 22.34 0.22 -2.56 16 21 C -0.13 -4.18 10.03 22.23 0.22 -3.95 16 22 C -0.07 -2.74 7.59 22.54 0.17 -2.57 16 23 S 0.22 5.79 23.13 -56.49 -1.31 4.48 16 24 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.40 23.27 7.42 -92.71 -0.69 22.58 16 28 H 0.28 14.76 8.31 -92.71 -0.77 13.99 16 29 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 30 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.16 2.72 8.06 -2.92 -0.02 2.70 16 32 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 33 H 0.09 3.88 7.87 -2.91 -0.02 3.86 16 Total: -1.00 -75.17 308.60 2.71 -72.46 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.47 Total: 31.51 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 4.73 Total: -11.81 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -3.15 Total: -106.84 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.06 Total: -35.65 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 5.79 SS G_CDS: -1.31 Total: 4.48 kcal Total: -75.17 2.71 -72.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336311687.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.627 kcal (2) G-P(sol) polarization free energy of solvation -75.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds