Wall clock time and date at job start Tue Mar 31 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29287 * 124.90327 * 2 1 4 4 C 1.31703 * 117.70000 * 179.97438 * 3 2 1 5 5 C 1.47428 * 122.87680 * 180.02562 * 4 3 2 6 6 C 1.40021 * 120.17568 * 144.68805 * 5 4 3 7 7 C 1.37800 * 119.81625 * 179.69891 * 6 5 4 8 8 C 1.38516 * 120.18049 * 0.57581 * 7 6 5 9 9 C 1.38516 * 120.35556 * 359.71876 * 8 7 6 10 10 C 1.37795 * 120.18419 * 359.97438 * 9 8 7 11 11 C 1.39643 * 114.24480 * 0.02562 * 4 3 2 12 12 N 1.36845 * 126.16592 * 180.02562 * 11 4 3 13 13 C 1.34777 * 120.00391 * 179.72732 * 12 11 4 14 14 O 1.22075 * 119.99646 * 359.97438 * 13 12 11 15 15 C 1.39775 * 120.00399 * 179.97438 * 13 12 11 16 16 H 1.07998 * 119.99554 * 359.97438 * 15 13 12 17 17 C 1.39975 * 120.00048 * 179.97438 * 15 13 12 18 18 N 1.30734 * 120.00054 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99765 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47213 * 90.00312 * 19 17 15 21 21 H 1.48504 * 109.47159 * 209.99970 * 19 17 15 22 22 H 1.48497 * 109.47216 * 330.00416 * 19 17 15 23 23 S 1.76011 * 124.89521 * 180.30881 * 2 1 3 24 24 H 1.09006 * 109.46836 * 89.99598 * 1 2 3 25 25 H 1.08995 * 109.47525 * 210.00060 * 1 2 3 26 26 H 1.08997 * 109.46748 * 330.00094 * 1 2 3 27 27 H 1.08000 * 120.08243 * 359.97438 * 6 5 4 28 28 H 1.08001 * 119.90853 * 180.29982 * 7 6 5 29 29 H 1.07999 * 119.82373 * 179.74607 * 8 7 6 30 30 H 1.08000 * 119.90830 * 179.97438 * 9 8 7 31 31 H 1.08000 * 120.09544 * 180.02562 * 10 9 8 32 32 H 0.97005 * 119.99768 * 359.97438 * 12 11 4 33 33 H 0.96995 * 119.99994 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2468 1.0603 0.0000 4 6 3.5534 0.8952 0.0005 5 6 4.5026 2.0232 0.0011 6 6 5.7113 1.9256 0.7013 7 6 6.5959 2.9822 0.6918 8 6 6.2868 4.1429 0.0019 9 6 5.0906 4.2496 -0.6881 10 6 4.1979 3.1999 -0.6938 11 6 3.9626 -0.4400 0.0004 12 7 5.2556 -0.8883 0.0014 13 6 5.5099 -2.2118 0.0067 14 8 4.5869 -3.0107 0.0112 15 6 6.8306 -2.6698 0.0072 16 1 7.6471 -1.9629 0.0028 17 6 7.0947 -4.0444 0.0133 18 7 6.1062 -4.8999 0.0181 19 14 8.8596 -4.6563 0.0131 20 1 9.3297 -4.8118 1.4132 21 1 8.9289 -5.9674 -0.6808 22 1 9.7233 -3.6762 -0.6930 23 16 2.5139 -1.4436 -0.0078 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 5.9514 1.0230 1.2436 28 1 7.5307 2.9067 1.2273 29 1 6.9826 4.9689 0.0017 30 1 4.8568 5.1582 -1.2232 31 1 3.2658 3.2845 -1.2326 32 1 5.9890 -0.2534 0.0019 33 1 6.2892 -5.8524 0.0219 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336457855.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:44 Heat of formation + Delta-G solvation = 1.580888 kcal Electronic energy + Delta-G solvation = -19582.802707 eV Core-core repulsion = 16505.832122 eV Total energy + Delta-G solvation = -3076.970586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.12410 -39.89254 -39.09171 -35.96066 -34.71773 -33.01074 -31.81917 -31.02315 -29.70756 -27.40683 -25.13534 -23.43992 -22.82946 -22.46492 -20.89423 -19.52446 -18.55675 -17.82686 -17.37411 -17.19276 -16.27432 -16.20053 -15.58754 -15.44785 -14.97051 -14.89004 -14.64438 -14.25834 -14.01719 -13.77624 -13.41951 -13.23609 -13.09816 -12.89557 -12.84114 -12.64106 -12.08969 -11.98371 -11.89808 -11.71370 -11.04192 -10.68504 -10.23800 -9.92137 -9.84027 -9.61187 -8.55610 -8.37607 -7.21523 -0.24016 0.33849 0.41222 0.51608 1.10029 1.34980 1.37259 1.54405 1.90612 2.13168 2.28191 2.68646 2.94589 3.36171 3.43443 3.91573 4.07490 4.13959 4.18278 4.32067 4.57890 4.68508 4.73071 4.79798 4.94839 5.06103 5.09220 5.17159 5.32753 5.59014 5.60881 5.65685 5.68126 5.78044 5.86663 6.11366 6.54849 6.94624 6.99359 8.06348 8.34737 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.006102 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.280791 B = 4587.924325 C = 6492.015474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.028 4.028 3 N -0.443 5.443 4 C -0.033 4.033 5 C -0.011 4.011 6 C -0.146 4.146 7 C -0.111 4.111 8 C -0.123 4.123 9 C -0.113 4.113 10 C -0.113 4.113 11 C 0.055 3.945 12 N -0.633 5.633 13 C 0.504 3.496 14 O -0.587 6.587 15 C -0.545 4.545 16 H 0.094 0.906 17 C 0.035 3.965 18 N -0.782 5.782 19 Si 1.004 2.996 20 H -0.258 1.258 21 H -0.268 1.268 22 H -0.247 1.247 23 S 0.154 5.846 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.148 0.852 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.119 0.881 32 H 0.412 0.588 33 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.344 12.613 -0.240 12.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.308 4.308 3 N -0.155 5.155 4 C -0.169 4.169 5 C -0.013 4.013 6 C -0.166 4.166 7 C -0.129 4.129 8 C -0.141 4.141 9 C -0.131 4.131 10 C -0.132 4.132 11 C -0.172 4.172 12 N -0.276 5.276 13 C 0.316 3.684 14 O -0.476 6.476 15 C -0.579 4.579 16 H 0.112 0.888 17 C -0.186 4.186 18 N -0.409 5.409 19 Si 0.822 3.178 20 H -0.182 1.182 21 H -0.193 1.193 22 H -0.171 1.171 23 S 0.403 5.597 24 H 0.111 0.889 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.127 0.873 28 H 0.166 0.834 29 H 0.174 0.826 30 H 0.170 0.830 31 H 0.137 0.863 32 H 0.252 0.748 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.417 11.204 -0.253 11.296 hybrid contribution 1.438 0.163 0.061 1.448 sum 0.021 11.367 -0.192 11.369 Atomic orbital electron populations 1.20364 0.82686 1.04426 1.04305 1.28586 1.02274 0.91059 1.08840 1.65785 1.03281 1.32202 1.14264 1.19152 0.89930 0.89111 1.18682 1.18240 0.92654 0.92193 0.98248 1.21368 0.94604 1.00131 1.00454 1.21333 0.99453 0.92804 0.99325 1.21641 0.97332 0.98222 0.96938 1.21420 0.93865 0.98624 0.99213 1.21344 1.00139 0.92706 0.99053 1.24555 0.92754 0.95996 1.03854 1.43246 1.03192 1.09779 1.71336 1.17292 0.92126 0.79253 0.79683 1.90657 1.46614 1.52519 1.57762 1.20094 0.92037 0.94309 1.51465 0.88752 1.27021 1.04601 0.96125 0.90882 1.70158 1.35948 1.03920 1.30905 0.84899 0.74664 0.78347 0.79844 1.18198 1.19251 1.17055 1.85972 0.94223 1.08004 1.71452 0.88919 0.89282 0.89032 0.87338 0.83402 0.82601 0.83027 0.86255 0.74751 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.45 10.49 71.24 0.75 -0.70 16 2 C -0.03 -1.05 7.59 88.48 0.67 -0.37 16 3 N -0.44 -17.70 10.33 -174.34 -1.80 -19.50 16 4 C -0.03 -1.40 6.46 41.92 0.27 -1.13 16 5 C -0.01 -0.40 5.77 -19.99 -0.12 -0.51 16 6 C -0.15 -4.78 8.31 22.60 0.19 -4.59 16 7 C -0.11 -2.78 10.03 22.23 0.22 -2.56 16 8 C -0.12 -2.63 10.05 22.40 0.23 -2.40 16 9 C -0.11 -2.66 10.03 22.23 0.22 -2.43 16 10 C -0.11 -3.50 9.68 22.60 0.22 -3.28 16 11 C 0.06 2.58 7.11 84.25 0.60 3.17 16 12 N -0.63 -30.27 4.91 -313.40 -1.54 -31.81 16 13 C 0.50 28.15 7.45 84.61 0.63 28.78 16 14 O -0.59 -36.38 12.37 -5.56 -0.07 -36.45 16 15 C -0.55 -28.84 9.20 23.06 0.21 -28.63 16 16 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16 17 C 0.03 1.77 5.49 85.28 0.47 2.23 16 18 N -0.78 -43.84 11.69 21.82 0.26 -43.59 16 19 Si 1.00 37.15 29.56 68.60 2.03 39.18 16 20 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 21 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 22 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 23 S 0.15 6.84 20.54 -56.49 -1.16 5.68 16 24 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.11 3.78 6.32 -2.91 -0.02 3.76 16 28 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 29 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 30 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 31 H 0.12 3.68 8.06 -2.91 -0.02 3.65 16 32 H 0.41 17.43 5.79 -92.70 -0.54 16.89 16 33 H 0.29 14.30 8.29 -92.71 -0.77 13.53 16 Total: -1.00 -71.22 303.27 2.90 -68.32 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.62 Total: 30.57 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 4.56 Total: -12.41 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -3.08 Total: -94.89 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.07 Total: -36.45 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Atomic # 16 Polarization: 6.84 SS G_CDS: -1.16 Total: 5.68 kcal Total: -71.22 2.90 -68.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336457855.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.903 kcal (2) G-P(sol) polarization free energy of solvation -71.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds