Wall clock time and date at job start Tue Mar 31 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36757 * 119.99936 * 2 1 4 4 H 1.07994 * 119.99669 * 215.93057 * 3 2 1 5 5 C 1.39095 * 119.99875 * 35.93415 * 3 2 1 6 6 N 1.31334 * 120.00248 * 10.16498 * 5 3 2 7 7 Si 1.86800 * 119.99573 * 190.16295 * 5 3 2 8 8 H 1.48507 * 109.46881 * 60.00111 * 7 5 3 9 9 H 1.48501 * 109.47027 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47227 * 300.00189 * 7 5 3 11 11 C 1.34774 * 119.99870 * 180.02562 * 2 1 3 12 12 O 1.21680 * 119.99934 * 184.92676 * 11 2 1 13 13 C 1.47109 * 120.00068 * 4.92315 * 11 2 1 14 14 N 1.30378 * 125.30198 * 173.55837 * 13 11 2 15 15 C 1.31461 * 115.99311 * 180.02562 * 14 13 11 16 16 C 1.48388 * 122.44777 * 180.02562 * 15 14 13 17 17 C 1.39344 * 120.12244 * 179.74999 * 16 15 14 18 18 C 1.38013 * 119.87506 * 180.27412 * 17 16 15 19 19 C 1.38327 * 120.12602 * 359.97438 * 18 17 16 20 20 C 1.38330 * 120.24246 * 359.97438 * 19 18 17 21 21 C 1.38013 * 120.12178 * 0.02562 * 20 19 18 22 22 C 1.36391 * 115.10875 * 0.27025 * 15 14 13 23 23 S 1.71041 * 108.96844 * 359.59647 * 22 15 14 24 24 H 1.09000 * 109.47175 * 239.58748 * 1 2 3 25 25 H 1.08996 * 109.47176 * 359.58428 * 1 2 3 26 26 H 1.08997 * 109.47435 * 119.58614 * 1 2 3 27 27 H 0.96993 * 120.00201 * 180.02562 * 6 5 3 28 28 H 1.07997 * 120.06299 * 0.27079 * 17 16 15 29 29 H 1.08003 * 119.93973 * 179.97438 * 18 17 16 30 30 H 1.07998 * 119.87751 * 179.97438 * 19 18 17 31 31 H 1.07999 * 119.93700 * 180.02562 * 20 19 18 32 32 H 1.07999 * 120.05948 * 180.02562 * 21 20 19 33 33 H 1.07996 * 125.51536 * 179.71076 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1488 1.1844 0.0000 4 1 3.0746 1.2733 -0.5488 5 6 1.6518 2.2743 0.7069 6 7 0.6420 2.1170 1.5317 7 14 2.4209 3.9619 0.4832 8 1 2.3056 4.3738 -0.9390 9 1 1.7140 4.9458 1.3419 10 1 3.8540 3.9077 0.8682 11 6 2.1389 -1.1672 -0.0005 12 8 3.3523 -1.1692 0.0900 13 6 1.4074 -2.4388 -0.1104 14 7 1.9556 -3.6145 -0.2405 15 6 1.1261 -4.6310 -0.3232 16 6 1.5948 -6.0309 -0.4733 17 6 0.6725 -7.0726 -0.5512 18 6 1.1142 -8.3733 -0.6851 19 6 2.4696 -8.6438 -0.7425 20 6 3.3895 -7.6134 -0.6668 21 6 2.9590 -6.3090 -0.5328 22 6 -0.1969 -4.3045 -0.2662 23 16 -0.3441 -2.6098 -0.0876 24 1 -0.3633 -0.5202 0.8863 25 1 -0.3633 1.0276 0.0075 26 1 -0.3634 -0.5074 -0.8936 27 1 0.2952 2.8771 2.0244 28 1 -0.3859 -6.8626 -0.5067 29 1 0.4003 -9.1815 -0.7451 30 1 2.8108 -9.6631 -0.8469 31 1 4.4465 -7.8302 -0.7126 32 1 3.6780 -5.5054 -0.4742 33 1 -1.0185 -5.0032 -0.3227 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336562891.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:02 Heat of formation + Delta-G solvation = 47.560615 kcal Electronic energy + Delta-G solvation = -19292.281943 eV Core-core repulsion = 16217.305188 eV Total energy + Delta-G solvation = -3074.976755 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.88430 -38.69917 -37.83509 -34.84658 -32.16487 -31.75069 -30.93681 -28.93891 -26.86669 -26.18298 -24.41928 -22.86656 -22.24232 -20.27827 -18.72567 -17.94443 -17.08266 -16.68223 -15.97888 -15.33022 -15.14035 -14.80226 -14.46782 -14.39594 -13.88001 -13.58523 -13.39241 -13.09311 -12.55971 -12.52934 -12.26055 -12.04538 -11.59323 -11.39295 -11.12638 -11.01293 -10.77725 -10.51052 -10.33732 -9.56590 -9.43027 -9.23126 -9.12334 -8.92207 -8.63014 -7.85722 -7.75245 -6.57804 -4.18803 0.60809 1.31972 1.43772 1.71710 2.16505 2.95122 3.13887 3.16032 3.18691 3.83110 3.93193 4.18549 4.23657 4.77374 4.87132 4.90284 4.96273 5.14309 5.31392 5.36306 5.48117 5.56789 5.72164 5.91196 6.01154 6.09523 6.22972 6.27729 6.48215 6.59635 6.65419 6.88279 6.99461 7.33346 7.84595 8.09778 8.29008 8.91440 9.06006 9.69299 10.47002 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.038374 B = 0.003805 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.487881 B = 7356.793044 C = 7996.335826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.418 5.418 3 C -0.301 4.301 4 H 0.101 0.899 5 C 0.037 3.963 6 N -0.867 5.867 7 Si 0.934 3.066 8 H -0.270 1.270 9 H -0.281 1.281 10 H -0.268 1.268 11 C 0.510 3.490 12 O -0.546 6.546 13 C 0.044 3.956 14 N -0.420 5.420 15 C 0.092 3.908 16 C -0.011 4.011 17 C -0.108 4.108 18 C -0.124 4.124 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.089 4.089 22 C -0.320 4.320 23 S 0.196 5.804 24 H 0.055 0.945 25 H 0.116 0.884 26 H 0.039 0.961 27 H 0.275 0.725 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.135 0.865 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.807 -13.263 -3.592 14.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.138 5.138 3 C -0.429 4.429 4 H 0.118 0.882 5 C -0.169 4.169 6 N -0.504 5.504 7 Si 0.759 3.241 8 H -0.195 1.195 9 H -0.207 1.207 10 H -0.193 1.193 11 C 0.296 3.704 12 O -0.428 6.428 13 C -0.233 4.233 14 N -0.134 5.134 15 C -0.044 4.044 16 C -0.013 4.013 17 C -0.127 4.127 18 C -0.142 4.142 19 C -0.141 4.141 20 C -0.140 4.140 21 C -0.108 4.108 22 C -0.461 4.461 23 S 0.455 5.545 24 H 0.073 0.927 25 H 0.134 0.866 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.153 0.847 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.608 -12.427 -3.330 14.034 hybrid contribution 0.267 -0.333 -0.004 0.427 sum -5.342 -12.760 -3.333 14.229 Atomic orbital electron populations 1.21829 0.82129 1.05214 0.97994 1.43261 1.05142 1.04200 1.61169 1.19611 1.08408 0.85658 1.29273 0.88176 1.25580 0.96583 1.00957 0.93781 1.69837 1.24576 1.32482 1.23487 0.85872 0.79575 0.80036 0.78594 1.19480 1.20653 1.19331 1.16852 0.87152 0.80887 0.85523 1.90698 1.12527 1.85119 1.54456 1.28052 0.92107 0.97307 1.05841 1.66476 1.35943 0.97325 1.13687 1.19014 0.87827 0.92976 1.04628 1.18190 0.93504 0.89336 1.00282 1.21101 0.99109 0.92150 1.00371 1.20986 0.95823 0.96148 1.01229 1.21186 0.93330 0.99032 1.00573 1.21139 0.99736 0.92612 1.00544 1.21413 0.95257 0.97062 0.97043 1.27273 1.00911 1.04645 1.13237 1.84581 1.10081 0.96726 1.63102 0.92710 0.86583 0.94362 0.91455 0.85979 0.86009 0.86231 0.85872 0.84662 0.81143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.55 7.62 59.85 0.46 2.00 16 2 N -0.42 -10.54 2.95 -123.55 -0.36 -10.90 16 3 C -0.30 -8.00 8.97 -15.04 -0.13 -8.13 16 4 H 0.10 2.74 7.72 -52.49 -0.41 2.33 16 5 C 0.04 0.92 5.02 -17.45 -0.09 0.84 16 6 N -0.87 -21.75 11.18 55.50 0.62 -21.13 16 7 Si 0.93 19.45 29.57 -169.99 -5.03 14.42 16 8 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 9 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 10 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 11 C 0.51 13.23 7.61 -12.66 -0.10 13.13 16 12 O -0.55 -16.11 16.95 5.21 0.09 -16.02 16 13 C 0.04 0.97 7.30 -14.57 -0.11 0.86 16 14 N -0.42 -9.08 9.91 -7.87 -0.08 -9.16 16 15 C 0.09 1.66 6.64 -84.51 -0.56 1.10 16 16 C -0.01 -0.17 5.88 -104.89 -0.62 -0.78 16 17 C -0.11 -1.36 9.48 -39.25 -0.37 -1.73 16 18 C -0.12 -1.34 10.03 -39.63 -0.40 -1.73 16 19 C -0.12 -1.32 10.04 -39.51 -0.40 -1.72 16 20 C -0.12 -1.51 10.03 -39.63 -0.40 -1.90 16 21 C -0.09 -1.36 9.63 -39.25 -0.38 -1.74 16 22 C -0.32 -4.93 10.39 30.07 0.31 -4.61 16 23 S 0.20 3.25 17.68 -107.50 -1.90 1.35 16 24 H 0.05 1.10 6.55 -46.12 -0.30 0.80 16 25 H 0.12 2.54 5.98 -51.93 -0.31 2.23 16 26 H 0.04 0.69 6.30 -40.95 -0.26 0.44 16 27 H 0.28 6.47 8.31 -40.82 -0.34 6.14 16 28 H 0.12 1.28 6.60 -52.49 -0.35 0.93 16 29 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.14 2.27 7.68 -52.49 -0.40 1.87 16 33 H 0.17 2.01 6.83 -52.49 -0.36 1.65 16 LS Contribution 298.31 15.07 4.50 4.50 Total: -1.00 -31.04 298.31 -7.73 -38.77 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -2.79 Total: 2.60 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -2.78 Total: -4.42 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.18 Total: -41.19 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.09 Total: -16.02 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.90 Total: 1.35 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.04 -7.73 -38.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336562891.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.330 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds