Wall clock time and date at job start Tue Mar 31 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36757 * 119.99936 * 2 1 4 4 H 1.07994 * 119.99669 * 215.93057 * 3 2 1 5 5 C 1.39095 * 119.99875 * 35.93415 * 3 2 1 6 6 N 1.31334 * 120.00248 * 10.16498 * 5 3 2 7 7 Si 1.86800 * 119.99573 * 190.16295 * 5 3 2 8 8 H 1.48507 * 109.46881 * 60.00111 * 7 5 3 9 9 H 1.48501 * 109.47027 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47227 * 300.00189 * 7 5 3 11 11 C 1.34774 * 119.99870 * 180.02562 * 2 1 3 12 12 O 1.21680 * 119.99934 * 184.92676 * 11 2 1 13 13 C 1.47109 * 120.00068 * 4.92315 * 11 2 1 14 14 N 1.30378 * 125.30198 * 173.55837 * 13 11 2 15 15 C 1.31461 * 115.99311 * 180.02562 * 14 13 11 16 16 C 1.48388 * 122.44777 * 180.02562 * 15 14 13 17 17 C 1.39344 * 120.12244 * 179.74999 * 16 15 14 18 18 C 1.38013 * 119.87506 * 180.27412 * 17 16 15 19 19 C 1.38327 * 120.12602 * 359.97438 * 18 17 16 20 20 C 1.38330 * 120.24246 * 359.97438 * 19 18 17 21 21 C 1.38013 * 120.12178 * 0.02562 * 20 19 18 22 22 C 1.36391 * 115.10875 * 0.27025 * 15 14 13 23 23 S 1.71041 * 108.96844 * 359.59647 * 22 15 14 24 24 H 1.09000 * 109.47175 * 239.58748 * 1 2 3 25 25 H 1.08996 * 109.47176 * 359.58428 * 1 2 3 26 26 H 1.08997 * 109.47435 * 119.58614 * 1 2 3 27 27 H 0.96993 * 120.00201 * 180.02562 * 6 5 3 28 28 H 1.07997 * 120.06299 * 0.27079 * 17 16 15 29 29 H 1.08003 * 119.93973 * 179.97438 * 18 17 16 30 30 H 1.07998 * 119.87751 * 179.97438 * 19 18 17 31 31 H 1.07999 * 119.93700 * 180.02562 * 20 19 18 32 32 H 1.07999 * 120.05948 * 180.02562 * 21 20 19 33 33 H 1.07996 * 125.51536 * 179.71076 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1488 1.1844 0.0000 4 1 3.0746 1.2733 -0.5488 5 6 1.6518 2.2743 0.7069 6 7 0.6420 2.1170 1.5317 7 14 2.4209 3.9619 0.4832 8 1 2.3056 4.3738 -0.9390 9 1 1.7140 4.9458 1.3419 10 1 3.8540 3.9077 0.8682 11 6 2.1389 -1.1672 -0.0005 12 8 3.3523 -1.1692 0.0900 13 6 1.4074 -2.4388 -0.1104 14 7 1.9556 -3.6145 -0.2405 15 6 1.1261 -4.6310 -0.3232 16 6 1.5948 -6.0309 -0.4733 17 6 0.6725 -7.0726 -0.5512 18 6 1.1142 -8.3733 -0.6851 19 6 2.4696 -8.6438 -0.7425 20 6 3.3895 -7.6134 -0.6668 21 6 2.9590 -6.3090 -0.5328 22 6 -0.1969 -4.3045 -0.2662 23 16 -0.3441 -2.6098 -0.0876 24 1 -0.3633 -0.5202 0.8863 25 1 -0.3633 1.0276 0.0075 26 1 -0.3634 -0.5074 -0.8936 27 1 0.2952 2.8771 2.0244 28 1 -0.3859 -6.8626 -0.5067 29 1 0.4003 -9.1815 -0.7451 30 1 2.8108 -9.6631 -0.8469 31 1 4.4465 -7.8302 -0.7126 32 1 3.6780 -5.5054 -0.4742 33 1 -1.0185 -5.0032 -0.3227 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336562891.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:02 Heat of formation + Delta-G solvation = 27.603970 kcal Electronic energy + Delta-G solvation = -19293.147328 eV Core-core repulsion = 16217.305188 eV Total energy + Delta-G solvation = -3075.842140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.25736 -40.30835 -39.17164 -36.81198 -33.97503 -33.06460 -31.88667 -30.23045 -28.61669 -27.85410 -26.03258 -24.18273 -23.24788 -21.69576 -20.21057 -19.48876 -18.95977 -17.76866 -17.63776 -17.07358 -16.51682 -16.22606 -16.12148 -15.44550 -15.27819 -15.15283 -14.53347 -14.40581 -14.04717 -13.92632 -13.81744 -13.57869 -13.39300 -12.85432 -12.74052 -12.34760 -12.12912 -11.98411 -11.77693 -11.20605 -11.04015 -10.67766 -10.57480 -10.47139 -9.86740 -9.68957 -9.05471 -8.48164 -6.20893 -0.76043 0.15620 0.23405 0.48978 0.77969 1.40603 1.43330 1.53717 1.63627 2.14615 2.30896 2.55979 2.96034 3.02500 3.37702 3.79322 3.89566 4.11882 4.18067 4.21943 4.33861 4.37095 4.54554 4.60213 4.70514 4.83018 5.08864 5.14439 5.15465 5.33897 5.55005 5.60396 5.61000 5.99115 6.07085 6.29281 6.69462 6.96938 7.15030 7.76455 8.56295 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.038374 B = 0.003805 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.487881 B = 7356.793044 C = 7996.335826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.429 5.429 3 C -0.345 4.345 4 H 0.075 0.925 5 C 0.009 3.991 6 N -0.882 5.882 7 Si 0.997 3.003 8 H -0.259 1.259 9 H -0.265 1.265 10 H -0.279 1.279 11 C 0.498 3.502 12 O -0.607 6.607 13 C -0.021 4.021 14 N -0.447 5.447 15 C 0.066 3.934 16 C -0.041 4.041 17 C -0.106 4.106 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.127 4.127 21 C -0.120 4.120 22 C -0.289 4.289 23 S 0.282 5.718 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.068 0.932 27 H 0.283 0.717 28 H 0.149 0.851 29 H 0.161 0.839 30 H 0.155 0.845 31 H 0.138 0.862 32 H 0.100 0.900 33 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.027 -15.743 -3.869 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.147 5.147 3 C -0.474 4.474 4 H 0.093 0.907 5 C -0.195 4.195 6 N -0.518 5.518 7 Si 0.819 3.181 8 H -0.183 1.183 9 H -0.189 1.189 10 H -0.205 1.205 11 C 0.285 3.715 12 O -0.494 6.494 13 C -0.296 4.296 14 N -0.163 5.163 15 C -0.070 4.070 16 C -0.044 4.044 17 C -0.125 4.125 18 C -0.134 4.134 19 C -0.133 4.133 20 C -0.145 4.145 21 C -0.140 4.140 22 C -0.430 4.430 23 S 0.540 5.460 24 H 0.081 0.919 25 H 0.125 0.875 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.167 0.833 29 H 0.179 0.821 30 H 0.173 0.827 31 H 0.156 0.844 32 H 0.118 0.882 33 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -8.874 -14.887 -3.606 17.702 hybrid contribution 1.161 0.158 0.079 1.175 sum -7.713 -14.729 -3.527 16.996 Atomic orbital electron populations 1.21892 0.79729 1.05278 0.99658 1.43460 1.06688 1.03695 1.60867 1.19608 1.08998 0.87301 1.31476 0.90731 1.26313 0.96750 1.03701 0.92785 1.69881 1.24882 1.33748 1.23327 0.84949 0.78030 0.75842 0.79268 1.18329 1.18882 1.20465 1.17448 0.86965 0.82512 0.84533 1.90612 1.15200 1.86621 1.56949 1.27231 0.95761 0.95819 1.10746 1.66434 1.38545 0.98170 1.13172 1.19454 0.88619 0.93387 1.05539 1.18349 0.94200 0.89038 1.02796 1.21407 0.99773 0.91944 0.99390 1.21478 0.96545 0.96380 0.99020 1.21636 0.93259 1.00033 0.98356 1.21359 1.01243 0.91771 1.00158 1.21332 0.95180 0.97723 0.99741 1.27868 1.01192 1.04878 1.09040 1.84007 1.04291 0.97088 1.60662 0.91944 0.87517 0.91469 0.90694 0.83317 0.82110 0.82740 0.84376 0.88168 0.76279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.31 7.62 127.77 0.97 4.28 16 2 N -0.43 -22.69 2.95 -663.03 -1.95 -24.64 16 3 C -0.35 -19.44 8.97 84.13 0.75 -18.68 16 4 H 0.07 4.44 7.72 -2.91 -0.02 4.42 16 5 C 0.01 0.47 5.02 84.97 0.43 0.89 16 6 N -0.88 -44.59 11.18 21.69 0.24 -44.34 16 7 Si 1.00 40.50 29.57 68.60 2.03 42.53 16 8 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 9 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 11 C 0.50 27.62 7.61 86.57 0.66 28.28 16 12 O -0.61 -39.15 16.95 -4.28 -0.07 -39.22 16 13 C -0.02 -0.97 7.30 87.24 0.64 -0.33 16 14 N -0.45 -20.26 9.91 -178.81 -1.77 -22.03 16 15 C 0.07 2.36 6.64 41.47 0.28 2.63 16 16 C -0.04 -1.27 5.88 -20.04 -0.12 -1.39 16 17 C -0.11 -2.28 9.48 22.48 0.21 -2.07 16 18 C -0.12 -1.96 10.03 22.24 0.22 -1.74 16 19 C -0.11 -2.04 10.04 22.31 0.22 -1.82 16 20 C -0.13 -3.01 10.03 22.24 0.22 -2.79 16 21 C -0.12 -3.84 9.63 22.49 0.22 -3.62 16 22 C -0.29 -7.95 10.39 67.39 0.70 -7.25 16 23 S 0.28 8.76 17.68 -56.49 -1.00 7.76 16 24 H 0.06 2.48 6.55 -6.08 -0.04 2.44 16 25 H 0.11 4.68 5.98 -2.39 -0.01 4.67 16 26 H 0.07 2.37 6.30 -9.37 -0.06 2.31 16 27 H 0.28 13.18 8.31 -92.71 -0.77 12.41 16 28 H 0.15 2.27 6.60 -2.91 -0.02 2.25 16 29 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 30 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 31 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 32 H 0.10 3.78 7.68 -2.91 -0.02 3.76 16 33 H 0.22 3.77 6.83 -2.91 -0.02 3.75 16 Total: -1.00 -75.32 298.31 3.96 -71.36 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 1.08 Total: 12.18 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 5.41 Total: -3.60 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -3.48 Total: -91.01 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.07 Total: -39.22 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 8.76 SS G_CDS: -1.00 Total: 7.76 kcal Total: -75.32 3.96 -71.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336562891.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.961 kcal (2) G-P(sol) polarization free energy of solvation -75.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds