Wall clock time and date at job start Tue Mar 31 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31381 * 1 3 3 Si 1.86792 * 119.99779 * 2 1 4 4 H 1.48501 * 109.47376 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47093 * 120.00001 * 3 2 1 6 6 H 1.48499 * 109.47045 * 239.99722 * 3 2 1 7 7 C 1.39029 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00315 * 173.07795 * 7 2 1 9 9 N 1.36893 * 120.00273 * 353.07727 * 7 2 1 10 10 C 1.34781 * 119.99935 * 149.65454 * 9 7 2 11 11 O 1.21625 * 120.00094 * 356.66541 * 10 9 7 12 12 C 1.47469 * 119.99722 * 176.66734 * 10 9 7 13 13 C 1.39629 * 120.22757 * 46.96659 * 12 10 9 14 14 C 1.38163 * 120.28310 * 180.02562 * 13 12 10 15 15 C 1.38033 * 120.60074 * 0.02562 * 14 13 12 16 16 C 1.39508 * 120.07992 * 359.97438 * 15 14 13 17 17 N 1.36219 * 133.64971 * 180.02562 * 16 15 14 18 18 C 1.30614 * 108.67129 * 179.22984 * 17 16 15 19 19 O 1.35192 * 124.94059 * 180.08434 * 18 17 16 20 20 O 1.34407 * 110.10772 * 0.65506 * 18 17 16 21 21 C 1.35013 * 108.21262 * 359.43175 * 20 18 17 22 22 C 1.46496 * 119.99815 * 329.66013 * 9 7 2 23 23 C 1.52999 * 117.49852 * 313.51671 * 22 9 7 24 24 C 1.52999 * 60.00087 * 252.51364 * 23 22 9 25 25 H 0.96995 * 120.00419 * 355.03634 * 1 2 3 26 26 H 1.08002 * 119.85449 * 0.02562 * 13 12 10 27 27 H 1.07997 * 119.69518 * 180.02562 * 14 13 12 28 28 H 1.08004 * 119.95826 * 179.97438 * 15 14 13 29 29 H 0.96700 * 114.00585 * 0.65402 * 19 18 17 30 30 H 1.09004 * 115.55066 * 99.22736 * 22 9 7 31 31 H 1.08993 * 117.49654 * 0.02562 * 23 22 9 32 32 H 1.09001 * 117.49414 * 145.02746 * 23 22 9 33 33 H 1.09004 * 117.50051 * 252.50924 * 24 23 22 34 34 H 1.09001 * 117.52066 * 107.48180 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 1.2827 2.7464 -0.0006 5 1 3.1014 1.6964 1.2125 6 1 3.1015 1.6963 -1.2125 7 6 2.0089 -1.2040 0.0005 8 1 3.0830 -1.2076 -0.1122 9 7 1.3320 -2.3852 0.1440 10 6 1.8064 -3.5080 -0.4313 11 8 2.8023 -3.4603 -1.1278 12 6 1.1179 -4.7942 -0.2162 13 6 -0.2697 -4.8793 -0.3473 14 6 -0.9160 -6.0836 -0.1455 15 6 -0.2021 -7.2169 0.1881 16 6 1.1849 -7.1548 0.3242 17 7 2.1413 -8.0736 0.6351 18 6 3.3080 -7.4870 0.6120 19 8 4.4866 -8.0969 0.8703 20 8 3.1651 -6.1860 0.3061 21 6 1.8515 -5.9393 0.1152 22 6 0.0919 -2.4288 0.9226 23 6 0.0884 -1.7328 2.2851 24 6 0.0929 -3.2607 2.2067 25 1 -0.4850 0.8368 0.0727 26 1 -0.8400 -3.9998 -0.6075 27 1 -1.9895 -6.1387 -0.2498 28 1 -0.7180 -8.1529 0.3438 29 1 4.4059 -9.0390 1.0727 30 1 -0.8296 -2.4020 0.3410 31 1 1.0086 -1.2421 2.6019 32 1 -0.8356 -1.2478 2.6001 33 1 -0.8280 -3.7810 2.4701 34 1 1.0161 -3.7759 2.4719 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337380766.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:44 Heat of formation + Delta-G solvation = 18.307171 kcal Electronic energy + Delta-G solvation = -22948.984442 eV Core-core repulsion = 19429.986291 eV Total energy + Delta-G solvation = -3518.998151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.08234 -39.26798 -38.19594 -37.15099 -36.12709 -34.27578 -33.06658 -31.31982 -30.39428 -29.08770 -25.47636 -23.84115 -22.85703 -22.49769 -21.56166 -21.30833 -19.31649 -18.90890 -18.16344 -17.09305 -16.96670 -16.66277 -15.81517 -15.19775 -14.94460 -14.60276 -14.17101 -14.04987 -13.65212 -13.47402 -13.13176 -12.85846 -12.30184 -12.13246 -11.86947 -11.65127 -11.22693 -11.11259 -10.83561 -10.74303 -10.63826 -10.50332 -10.39690 -9.87508 -9.44977 -8.91487 -8.61644 -8.42365 -8.00996 -7.74469 -6.37003 -4.00629 0.85887 1.40811 1.74879 2.48874 3.16372 3.21800 3.25677 3.58583 3.67921 3.99398 4.12637 4.47342 4.67139 4.73998 4.91934 5.07870 5.20494 5.40865 5.43608 5.55143 5.71704 5.76764 5.92708 6.04536 6.15441 6.27351 6.29231 6.50504 6.55784 6.68947 6.70163 6.90236 6.99182 7.08608 7.48574 7.72436 8.06071 8.40035 9.08230 9.28024 9.86065 10.66499 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.022527 B = 0.005597 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.673196 B = 5001.394556 C = 5659.266941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.044 3.956 3 Si 0.923 3.077 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.309 4.309 8 H 0.095 0.905 9 N -0.404 5.404 10 C 0.484 3.516 11 O -0.572 6.572 12 C -0.048 4.048 13 C -0.072 4.072 14 C -0.112 4.112 15 C -0.073 4.073 16 C 0.039 3.961 17 N -0.528 5.528 18 C 0.440 3.560 19 O -0.416 6.416 20 O -0.185 6.185 21 C 0.040 3.960 22 C 0.124 3.876 23 C -0.141 4.141 24 C -0.217 4.217 25 H 0.269 0.731 26 H 0.148 0.852 27 H 0.138 0.862 28 H 0.133 0.867 29 H 0.436 0.564 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.577 -11.721 4.218 12.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.162 4.162 3 Si 0.750 3.250 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.437 4.437 8 H 0.113 0.887 9 N -0.121 5.121 10 C 0.273 3.727 11 O -0.456 6.456 12 C -0.052 4.052 13 C -0.092 4.092 14 C -0.132 4.132 15 C -0.092 4.092 16 C -0.072 4.072 17 N -0.280 5.280 18 C 0.190 3.810 19 O -0.217 6.217 20 O -0.078 6.078 21 C -0.011 4.011 22 C 0.019 3.981 23 C -0.178 4.178 24 C -0.255 4.255 25 H 0.080 0.920 26 H 0.166 0.834 27 H 0.156 0.844 28 H 0.151 0.849 29 H 0.295 0.705 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.922 -11.547 3.868 12.523 hybrid contribution 0.548 0.964 0.133 1.117 sum -2.374 -10.582 4.001 11.560 Atomic orbital electron populations 1.69850 1.05861 1.28051 1.46402 1.25336 0.95469 0.99518 0.95854 0.86044 0.79099 0.80664 0.79228 1.20800 1.19897 1.19660 1.19511 0.92522 0.81973 1.49667 0.88703 1.42966 1.20726 1.06938 1.41452 1.17779 0.87317 0.83434 0.84191 1.90673 1.27683 1.85788 1.41447 1.19152 0.92568 0.92007 1.01472 1.21361 0.91424 0.98819 0.97550 1.20940 1.00240 0.91648 1.00336 1.20198 0.89201 0.99368 1.00452 1.19361 0.94923 0.88374 1.04501 1.71141 0.96825 1.31269 1.28742 1.22289 0.86021 0.80286 0.92376 1.84674 1.21017 1.30330 1.85660 1.84463 1.27016 1.24548 1.71748 1.19906 0.79051 0.96868 1.05252 1.21239 0.89362 1.01605 0.85922 1.22733 1.02377 0.92232 1.00492 1.23503 1.01900 0.95198 1.04888 0.92026 0.83436 0.84379 0.84876 0.70501 0.87280 0.89158 0.89558 0.89291 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.74 10.78 55.50 0.60 -21.14 16 2 C 0.04 1.12 4.88 -17.45 -0.09 1.04 16 3 Si 0.92 20.32 29.56 -169.99 -5.03 15.30 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.31 -8.46 8.67 -15.00 -0.13 -8.59 16 8 H 0.10 2.75 7.58 -52.49 -0.40 2.35 16 9 N -0.40 -10.22 2.90 -108.92 -0.32 -10.54 16 10 C 0.48 12.41 7.15 -12.50 -0.09 12.32 16 11 O -0.57 -16.88 16.81 5.26 0.09 -16.79 16 12 C -0.05 -0.99 4.58 -104.97 -0.48 -1.47 16 13 C -0.07 -1.20 7.64 -39.09 -0.30 -1.50 16 14 C -0.11 -1.47 10.00 -39.68 -0.40 -1.86 16 15 C -0.07 -1.00 10.09 -39.18 -0.40 -1.39 16 16 C 0.04 0.67 7.23 -84.71 -0.61 0.06 16 17 N -0.53 -8.43 11.38 -12.80 -0.15 -8.58 16 18 C 0.44 7.11 9.54 52.24 0.50 7.60 16 19 O -0.42 -4.82 13.62 -40.55 -0.55 -5.37 16 20 O -0.19 -3.82 10.77 -19.84 -0.21 -4.03 16 21 C 0.04 0.80 7.08 -38.20 -0.27 0.53 16 22 C 0.12 2.63 2.25 -67.93 -0.15 2.48 16 23 C -0.14 -2.80 8.67 -26.73 -0.23 -3.03 16 24 C -0.22 -3.92 8.60 -26.73 -0.23 -4.15 16 25 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 26 H 0.15 2.39 6.07 -52.49 -0.32 2.07 16 27 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 28 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 29 H 0.44 2.25 9.06 45.56 0.41 2.66 16 30 H 0.11 2.28 6.76 -51.93 -0.35 1.93 16 31 H 0.09 1.96 7.95 -51.93 -0.41 1.55 16 32 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 299.81 15.07 4.52 4.52 Total: -1.00 -33.52 299.81 -6.24 -39.76 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -2.32 Total: 4.86 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -2.87 Total: 2.02 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.14 Total: -40.26 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.68 Total: -26.19 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.52 -6.24 -39.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337380766.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.063 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds