Wall clock time and date at job start Tue Mar 31 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31381 * 1 3 3 Si 1.86792 * 119.99779 * 2 1 4 4 H 1.48501 * 109.47376 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47093 * 120.00001 * 3 2 1 6 6 H 1.48499 * 109.47045 * 239.99722 * 3 2 1 7 7 C 1.39029 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00315 * 173.07795 * 7 2 1 9 9 N 1.36893 * 120.00273 * 353.07727 * 7 2 1 10 10 C 1.34781 * 119.99935 * 149.65454 * 9 7 2 11 11 O 1.21625 * 120.00094 * 356.66541 * 10 9 7 12 12 C 1.47469 * 119.99722 * 176.66734 * 10 9 7 13 13 C 1.39629 * 120.22757 * 46.96659 * 12 10 9 14 14 C 1.38163 * 120.28310 * 180.02562 * 13 12 10 15 15 C 1.38033 * 120.60074 * 0.02562 * 14 13 12 16 16 C 1.39508 * 120.07992 * 359.97438 * 15 14 13 17 17 N 1.36219 * 133.64971 * 180.02562 * 16 15 14 18 18 C 1.30614 * 108.67129 * 179.22984 * 17 16 15 19 19 O 1.35192 * 124.94059 * 180.08434 * 18 17 16 20 20 O 1.34407 * 110.10772 * 0.65506 * 18 17 16 21 21 C 1.35013 * 108.21262 * 359.43175 * 20 18 17 22 22 C 1.46496 * 119.99815 * 329.66013 * 9 7 2 23 23 C 1.52999 * 117.49852 * 313.51671 * 22 9 7 24 24 C 1.52999 * 60.00087 * 252.51364 * 23 22 9 25 25 H 0.96995 * 120.00419 * 355.03634 * 1 2 3 26 26 H 1.08002 * 119.85449 * 0.02562 * 13 12 10 27 27 H 1.07997 * 119.69518 * 180.02562 * 14 13 12 28 28 H 1.08004 * 119.95826 * 179.97438 * 15 14 13 29 29 H 0.96700 * 114.00585 * 0.65402 * 19 18 17 30 30 H 1.09004 * 115.55066 * 99.22736 * 22 9 7 31 31 H 1.08993 * 117.49654 * 0.02562 * 23 22 9 32 32 H 1.09001 * 117.49414 * 145.02746 * 23 22 9 33 33 H 1.09004 * 117.50051 * 252.50924 * 24 23 22 34 34 H 1.09001 * 117.52066 * 107.48180 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 1.2827 2.7464 -0.0006 5 1 3.1014 1.6964 1.2125 6 1 3.1015 1.6963 -1.2125 7 6 2.0089 -1.2040 0.0005 8 1 3.0830 -1.2076 -0.1122 9 7 1.3320 -2.3852 0.1440 10 6 1.8064 -3.5080 -0.4313 11 8 2.8023 -3.4603 -1.1278 12 6 1.1179 -4.7942 -0.2162 13 6 -0.2697 -4.8793 -0.3473 14 6 -0.9160 -6.0836 -0.1455 15 6 -0.2021 -7.2169 0.1881 16 6 1.1849 -7.1548 0.3242 17 7 2.1413 -8.0736 0.6351 18 6 3.3080 -7.4870 0.6120 19 8 4.4866 -8.0969 0.8703 20 8 3.1651 -6.1860 0.3061 21 6 1.8515 -5.9393 0.1152 22 6 0.0919 -2.4288 0.9226 23 6 0.0884 -1.7328 2.2851 24 6 0.0929 -3.2607 2.2067 25 1 -0.4850 0.8368 0.0727 26 1 -0.8400 -3.9998 -0.6075 27 1 -1.9895 -6.1387 -0.2498 28 1 -0.7180 -8.1529 0.3438 29 1 4.4059 -9.0390 1.0727 30 1 -0.8296 -2.4020 0.3410 31 1 1.0086 -1.2421 2.6019 32 1 -0.8356 -1.2478 2.6001 33 1 -0.8280 -3.7810 2.4701 34 1 1.0161 -3.7759 2.4719 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337380766.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:43 Heat of formation + Delta-G solvation = -9.569234 kcal Electronic energy + Delta-G solvation = -22950.193254 eV Core-core repulsion = 19429.986291 eV Total energy + Delta-G solvation = -3520.206962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.38725 -40.95073 -39.32985 -38.46183 -37.95110 -35.58691 -34.91716 -33.19473 -31.79571 -30.34273 -27.34785 -25.20957 -24.20879 -23.91068 -23.09853 -22.93295 -20.92996 -20.04958 -19.46053 -18.91156 -18.33303 -18.10466 -17.41358 -17.04472 -16.23138 -16.07848 -15.90302 -15.43663 -15.13828 -14.81238 -14.51149 -14.46461 -13.95815 -13.47442 -13.30145 -13.12762 -12.92761 -12.74355 -12.58530 -12.27308 -12.15440 -12.05359 -11.89214 -11.63844 -11.12511 -10.75002 -10.39724 -9.80729 -9.66761 -9.26855 -8.33170 -6.06540 -0.40189 0.12212 0.62506 1.19240 1.37636 1.40181 1.47601 1.96875 2.23032 2.45097 2.63919 2.85215 3.00226 3.22426 3.39987 3.71686 3.92079 4.04669 4.18034 4.27429 4.33832 4.38310 4.49058 4.67420 4.82589 4.87972 5.02582 5.12412 5.28992 5.34884 5.37005 5.39984 5.45401 5.56812 5.98944 6.06361 6.46501 6.58495 7.10096 7.34220 7.93249 8.67999 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.022527 B = 0.005597 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.673196 B = 5001.394556 C = 5659.266941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.022 3.978 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.352 4.352 8 H 0.058 0.942 9 N -0.412 5.412 10 C 0.469 3.531 11 O -0.636 6.636 12 C -0.083 4.083 13 C -0.064 4.064 14 C -0.089 4.089 15 C -0.051 4.051 16 C 0.033 3.967 17 N -0.518 5.518 18 C 0.439 3.561 19 O -0.408 6.408 20 O -0.229 6.229 21 C 0.005 3.995 22 C 0.105 3.895 23 C -0.144 4.144 24 C -0.179 4.179 25 H 0.277 0.723 26 H 0.149 0.851 27 H 0.194 0.806 28 H 0.177 0.823 29 H 0.461 0.539 30 H 0.116 0.884 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.133 0.867 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.895 -13.413 5.334 15.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.184 4.184 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.208 1.208 7 C -0.480 4.480 8 H 0.076 0.924 9 N -0.128 5.128 10 C 0.260 3.740 11 O -0.524 6.524 12 C -0.087 4.087 13 C -0.083 4.083 14 C -0.108 4.108 15 C -0.070 4.070 16 C -0.078 4.078 17 N -0.270 5.270 18 C 0.190 3.810 19 O -0.213 6.213 20 O -0.124 6.124 21 C -0.045 4.045 22 C 0.001 3.999 23 C -0.182 4.182 24 C -0.217 4.217 25 H 0.088 0.912 26 H 0.167 0.833 27 H 0.211 0.789 28 H 0.195 0.805 29 H 0.325 0.675 30 H 0.133 0.867 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.151 0.849 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.285 -13.275 5.026 15.524 hybrid contribution 1.575 1.390 -0.221 2.112 sum -4.710 -11.885 4.806 13.658 Atomic orbital electron populations 1.69875 1.06159 1.29119 1.45001 1.25893 0.96414 1.01331 0.94735 0.85247 0.78315 0.77662 0.78619 1.18533 1.19592 1.20847 1.19363 0.91569 0.84077 1.52999 0.92430 1.43156 1.21628 1.06356 1.41614 1.18672 0.86853 0.85379 0.83132 1.90588 1.30548 1.87187 1.44126 1.18895 0.94264 0.89732 1.05846 1.21533 0.89496 1.00724 0.96529 1.21457 1.02518 0.89335 0.97482 1.20824 0.87593 1.01296 0.97305 1.19863 0.96384 0.87061 1.04511 1.71177 0.96458 1.30423 1.28932 1.22620 0.87227 0.79225 0.91906 1.84692 1.19260 1.32379 1.84997 1.84385 1.28200 1.27072 1.72730 1.20146 0.79238 0.98011 1.07090 1.21345 0.87699 1.04466 0.86375 1.22729 1.02062 0.93784 0.99608 1.23466 1.02943 0.94004 1.01266 0.91244 0.83307 0.78924 0.80534 0.67470 0.86702 0.91891 0.87394 0.84939 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.39 10.78 21.68 0.23 -43.15 16 2 C 0.02 1.15 4.88 84.95 0.41 1.56 16 3 Si 0.98 42.49 29.56 68.60 2.03 44.52 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.35 -20.52 8.67 84.09 0.73 -19.79 16 8 H 0.06 3.67 7.58 -2.91 -0.02 3.65 16 9 N -0.41 -21.95 2.90 -616.76 -1.79 -23.74 16 10 C 0.47 25.68 7.15 86.68 0.62 26.30 16 11 O -0.64 -40.99 16.81 -4.11 -0.07 -41.05 16 12 C -0.08 -3.54 4.58 -20.09 -0.09 -3.63 16 13 C -0.06 -1.99 7.64 22.59 0.17 -1.82 16 14 C -0.09 -1.87 10.00 22.20 0.22 -1.64 16 15 C -0.05 -1.15 10.09 22.53 0.23 -0.92 16 16 C 0.03 1.04 7.23 39.24 0.28 1.33 16 17 N -0.52 -15.68 11.38 -422.75 -4.81 -20.49 16 18 C 0.44 14.23 9.54 130.42 1.24 15.47 16 19 O -0.41 -9.22 13.62 -62.46 -0.85 -10.08 16 20 O -0.23 -9.97 10.77 11.64 0.13 -9.85 16 21 C 0.00 0.20 7.08 23.17 0.16 0.36 16 22 C 0.10 4.46 2.25 44.99 0.10 4.56 16 23 C -0.14 -5.66 8.67 30.59 0.27 -5.39 16 24 C -0.18 -6.21 8.60 30.59 0.26 -5.94 16 25 H 0.28 12.94 8.31 -92.71 -0.77 12.17 16 26 H 0.15 4.55 6.07 -2.91 -0.02 4.53 16 27 H 0.19 2.03 8.06 -2.91 -0.02 2.01 16 28 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.46 4.00 9.06 -74.06 -0.67 3.33 16 30 H 0.12 4.69 6.76 -2.38 -0.02 4.67 16 31 H 0.06 2.81 7.95 -2.39 -0.02 2.79 16 32 H 0.11 3.71 8.14 -2.39 -0.02 3.70 16 33 H 0.13 3.45 8.14 -2.39 -0.02 3.43 16 34 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -80.84 299.81 -0.02 -80.86 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.50 Total: 12.55 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 4.62 Total: 10.43 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -6.37 Total: -87.39 kcal Atomic # 8 Polarization: -60.18 SS G_CDS: -0.79 Total: -60.98 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -80.84 -0.02 -80.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337380766.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.292 kcal (2) G-P(sol) polarization free energy of solvation -80.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds