Wall clock time and date at job start Tue Mar 31 2020 06:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81395 * 109.46892 * 2 1 4 4 C 1.81409 * 102.99786 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46814 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46623 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 8 8 N 1.29945 * 126.28943 * 90.02241 * 7 6 5 9 9 O 1.21301 * 110.25300 * 179.97438 * 8 7 6 10 10 C 1.33641 * 109.81235 * 0.02562 * 9 8 7 11 11 C 1.50699 * 126.55289 * 179.97438 * 10 9 8 12 12 S 1.80992 * 109.47340 * 269.97748 * 11 10 9 13 13 C 1.76202 * 100.00338 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99155 * 359.97438 * 13 12 11 15 15 C 1.38794 * 120.00425 * 180.02562 * 13 12 11 16 16 N 1.31635 * 119.99969 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00120 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47075 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46963 * 119.99657 * 17 15 13 20 20 H 1.48502 * 109.47105 * 239.99683 * 17 15 13 21 21 N 1.31132 * 106.89893 * 359.76747 * 10 9 8 22 22 H 1.08998 * 109.46864 * 60.00154 * 1 2 3 23 23 H 1.09000 * 109.46957 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46988 * 299.99748 * 1 2 3 25 25 H 1.09004 * 109.46853 * 239.99769 * 2 1 3 26 26 H 1.09003 * 109.46727 * 120.00324 * 2 1 3 27 27 H 1.09000 * 109.47067 * 59.99940 * 4 3 2 28 28 H 1.09001 * 109.46593 * 299.99946 * 4 3 2 29 29 H 1.09000 * 109.47486 * 60.00033 * 5 4 3 30 30 H 1.09001 * 109.47362 * 299.99310 * 5 4 3 31 31 H 1.08993 * 109.46955 * 300.00075 * 6 5 4 32 32 H 1.09000 * 109.47050 * 59.99904 * 6 5 4 33 33 H 1.08994 * 109.46823 * 29.98007 * 11 10 9 34 34 H 1.09001 * 109.47261 * 149.97419 * 11 10 9 35 35 H 0.96997 * 119.99967 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9372 1.5058 -0.0008 5 6 4.6064 2.8816 -0.0002 6 6 6.1267 2.7091 -0.0002 7 6 6.7860 4.0643 -0.0003 8 7 7.1228 4.7558 1.0470 9 8 7.6331 5.8039 0.7119 10 6 7.6710 5.8833 -0.6216 11 6 8.2249 7.0228 -1.4375 12 16 6.9121 8.2253 -1.7639 13 6 7.8118 9.4131 -2.7042 14 1 8.8608 9.2574 -2.9088 15 6 7.1728 10.5491 -3.1811 16 7 5.8944 10.7390 -2.9313 17 14 8.1266 11.8080 -4.1787 18 1 9.5366 11.3633 -4.3187 19 1 7.5130 11.9409 -5.5244 20 1 8.0886 13.1207 -3.4854 21 7 7.1381 4.7782 -1.0845 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 4.2399 0.9544 -0.8910 28 1 4.2406 0.9541 0.8890 29 1 4.3037 3.4327 0.8902 30 1 4.3031 3.4337 -0.8898 31 1 6.4297 2.1573 0.8895 32 1 6.4298 2.1580 -0.8904 33 1 9.0314 7.5060 -0.8861 34 1 8.6098 6.6396 -2.3826 35 1 5.4478 11.5328 -3.2649 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350979451.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:34 Heat of formation + Delta-G solvation = 40.720799 kcal Electronic energy + Delta-G solvation = -17105.703719 eV Core-core repulsion = 14165.874318 eV Total energy + Delta-G solvation = -2939.829400 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.24194 -36.48484 -34.65915 -33.11739 -32.81451 -32.54771 -28.71542 -28.01510 -25.63298 -24.23748 -23.30890 -22.19830 -20.92168 -17.95402 -17.80683 -17.02209 -16.43587 -15.79153 -15.16808 -14.99434 -14.91317 -14.60005 -14.28195 -14.16816 -13.47929 -13.07034 -12.95633 -12.74661 -12.70863 -12.01644 -11.90410 -11.76478 -11.62618 -11.20657 -11.14436 -11.13705 -11.04982 -10.81327 -10.67665 -10.20800 -10.16198 -9.39817 -9.19306 -8.53884 -7.91657 -6.73685 -6.35733 -4.10364 1.29969 1.42099 2.32403 2.41442 3.06079 3.16564 3.21852 3.26327 3.42484 3.79109 4.06713 4.22576 4.55348 4.59793 4.62134 4.70947 4.93725 5.01551 5.02577 5.06486 5.22248 5.27659 5.32352 5.34231 5.43215 5.52960 5.65977 5.72823 5.88348 5.93928 6.01129 6.15419 6.28888 7.48853 8.23210 8.46571 9.10297 10.72307 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021491 B = 0.002764 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.584724 B =10127.937458 C =11148.431073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 S -0.260 6.260 4 C -0.082 4.082 5 C -0.101 4.101 6 C -0.017 4.017 7 C 0.166 3.834 8 N -0.392 5.392 9 O 0.076 5.924 10 C 0.228 3.772 11 C -0.043 4.043 12 S -0.082 6.082 13 C -0.525 4.525 14 H 0.081 0.919 15 C 0.074 3.926 16 N -0.867 5.867 17 Si 0.925 3.075 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.279 1.279 21 N -0.481 5.481 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.431 -19.728 5.586 20.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.240 4.240 3 S -0.034 6.034 4 C -0.230 4.230 5 C -0.140 4.140 6 C -0.058 4.058 7 C -0.107 4.107 8 N -0.102 5.102 9 O 0.019 5.981 10 C 0.008 3.992 11 C -0.192 4.192 12 S 0.144 5.856 13 C -0.674 4.674 14 H 0.099 0.901 15 C -0.136 4.136 16 N -0.502 5.502 17 Si 0.751 3.249 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.205 1.205 21 N -0.216 5.216 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.534 -19.274 6.384 21.044 hybrid contribution 2.552 -0.120 -1.031 2.755 sum -2.982 -19.394 5.353 20.339 Atomic orbital electron populations 1.21513 0.92204 1.02456 1.03384 1.23301 1.00317 0.95602 1.04739 1.87207 1.05648 1.12396 1.98100 1.23328 0.93331 1.01258 1.05079 1.21284 0.92692 0.95254 1.04800 1.19835 0.93528 0.87904 1.04519 1.25630 1.00900 1.00132 0.84083 1.74564 1.15835 0.95721 1.24049 1.85287 1.57442 1.30417 1.24968 1.28218 0.94115 0.95315 0.81556 1.21981 1.03980 0.93797 0.99459 1.85230 1.11143 1.18506 1.70728 1.22747 0.98347 1.07120 1.39137 0.90102 1.25037 0.95190 0.97499 0.95866 1.70010 1.09198 1.27708 1.43237 0.86014 0.79611 0.80046 0.79260 1.19392 1.20448 1.20452 1.71933 1.16921 1.03910 1.28793 0.91549 0.91175 0.91641 0.90146 0.90238 0.89676 0.89901 0.90429 0.89779 0.89186 0.88549 0.87927 0.87099 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.92 37.16 0.37 -0.53 16 2 C -0.09 -0.67 6.66 37.16 0.25 -0.42 16 3 S -0.26 -2.75 21.74 -107.50 -2.34 -5.09 16 4 C -0.08 -0.73 5.94 37.16 0.22 -0.51 16 5 C -0.10 -1.14 5.20 -26.73 -0.14 -1.28 16 6 C -0.02 -0.20 5.84 -27.88 -0.16 -0.36 16 7 C 0.17 2.68 7.47 -156.36 -1.17 1.51 16 8 N -0.39 -6.87 12.16 30.90 0.38 -6.49 16 9 O 0.08 1.40 11.31 18.11 0.20 1.61 16 10 C 0.23 4.27 7.77 -13.06 -0.10 4.17 16 11 C -0.04 -0.84 6.30 36.01 0.23 -0.61 16 12 S -0.08 -2.05 21.42 -107.50 -2.30 -4.35 16 13 C -0.53 -14.11 9.50 30.94 0.29 -13.82 16 14 H 0.08 2.05 7.80 -52.48 -0.41 1.64 16 15 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 16 N -0.87 -25.01 13.22 55.49 0.73 -24.27 16 17 Si 0.92 20.58 29.55 -169.99 -5.02 15.56 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 21 N -0.48 -8.84 11.55 -9.87 -0.11 -8.95 16 22 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 34 H 0.11 2.02 8.14 -51.92 -0.42 1.60 16 35 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -30.70 334.33 -8.77 -39.47 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -5.04 Total: -2.59 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -0.31 Total: -9.93 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 1.00 Total: -39.72 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.20 Total: 1.61 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -4.80 SS G_CDS: -4.64 Total: -9.44 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.70 -8.77 -39.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350979451.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.191 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds