Wall clock time and date at job start Tue Mar 31 2020 06:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81395 * 109.46892 * 2 1 4 4 C 1.81409 * 102.99786 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46814 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46623 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 8 8 N 1.29945 * 126.28943 * 90.02241 * 7 6 5 9 9 O 1.21301 * 110.25300 * 179.97438 * 8 7 6 10 10 C 1.33641 * 109.81235 * 0.02562 * 9 8 7 11 11 C 1.50699 * 126.55289 * 179.97438 * 10 9 8 12 12 S 1.80992 * 109.47340 * 269.97748 * 11 10 9 13 13 C 1.76202 * 100.00338 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99155 * 359.97438 * 13 12 11 15 15 C 1.38794 * 120.00425 * 180.02562 * 13 12 11 16 16 N 1.31635 * 119.99969 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00120 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47075 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46963 * 119.99657 * 17 15 13 20 20 H 1.48502 * 109.47105 * 239.99683 * 17 15 13 21 21 N 1.31132 * 106.89893 * 359.76747 * 10 9 8 22 22 H 1.08998 * 109.46864 * 60.00154 * 1 2 3 23 23 H 1.09000 * 109.46957 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46988 * 299.99748 * 1 2 3 25 25 H 1.09004 * 109.46853 * 239.99769 * 2 1 3 26 26 H 1.09003 * 109.46727 * 120.00324 * 2 1 3 27 27 H 1.09000 * 109.47067 * 59.99940 * 4 3 2 28 28 H 1.09001 * 109.46593 * 299.99946 * 4 3 2 29 29 H 1.09000 * 109.47486 * 60.00033 * 5 4 3 30 30 H 1.09001 * 109.47362 * 299.99310 * 5 4 3 31 31 H 1.08993 * 109.46955 * 300.00075 * 6 5 4 32 32 H 1.09000 * 109.47050 * 59.99904 * 6 5 4 33 33 H 1.08994 * 109.46823 * 29.98007 * 11 10 9 34 34 H 1.09001 * 109.47261 * 149.97419 * 11 10 9 35 35 H 0.96997 * 119.99967 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9372 1.5058 -0.0008 5 6 4.6064 2.8816 -0.0002 6 6 6.1267 2.7091 -0.0002 7 6 6.7860 4.0643 -0.0003 8 7 7.1228 4.7558 1.0470 9 8 7.6331 5.8039 0.7119 10 6 7.6710 5.8833 -0.6216 11 6 8.2249 7.0228 -1.4375 12 16 6.9121 8.2253 -1.7639 13 6 7.8118 9.4131 -2.7042 14 1 8.8608 9.2574 -2.9088 15 6 7.1728 10.5491 -3.1811 16 7 5.8944 10.7390 -2.9313 17 14 8.1266 11.8080 -4.1787 18 1 9.5366 11.3633 -4.3187 19 1 7.5130 11.9409 -5.5244 20 1 8.0886 13.1207 -3.4854 21 7 7.1381 4.7782 -1.0845 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 4.2399 0.9544 -0.8910 28 1 4.2406 0.9541 0.8890 29 1 4.3037 3.4327 0.8902 30 1 4.3031 3.4337 -0.8898 31 1 6.4297 2.1573 0.8895 32 1 6.4298 2.1580 -0.8904 33 1 9.0314 7.5060 -0.8861 34 1 8.6098 6.6396 -2.3826 35 1 5.4478 11.5328 -3.2649 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350979451.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:33 Heat of formation + Delta-G solvation = 22.267759 kcal Electronic energy + Delta-G solvation = -17106.503903 eV Core-core repulsion = 14165.874318 eV Total energy + Delta-G solvation = -2940.629584 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.63186 -37.66976 -35.87679 -34.62437 -34.09114 -33.65304 -30.13236 -29.06889 -27.69607 -25.07916 -24.46058 -23.22660 -22.09442 -19.86884 -19.21680 -18.42731 -17.27402 -16.90074 -16.69395 -16.32712 -16.02693 -15.74972 -15.47400 -15.27048 -14.79883 -14.52332 -14.09548 -13.74833 -13.40456 -13.28045 -13.18741 -12.92399 -12.90960 -12.82652 -12.55066 -12.35053 -12.17346 -12.05541 -11.87319 -11.75364 -11.17441 -10.97219 -10.88479 -10.39152 -8.76924 -8.72700 -8.39082 -6.18939 -0.11571 0.62792 1.01464 1.39238 1.43770 1.55079 1.62562 1.66638 1.79984 2.22394 2.57126 2.94881 2.98646 3.25279 3.72054 3.83395 3.96929 4.04100 4.04899 4.11129 4.15457 4.40306 4.43468 4.50860 4.53882 4.58975 4.79640 4.85591 4.87077 4.90690 4.98598 5.09091 5.22447 5.42682 6.18624 7.03905 7.05806 8.70680 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021491 B = 0.002764 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.584724 B =10127.937458 C =11148.431073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.074 4.074 3 S -0.336 6.336 4 C -0.063 4.063 5 C -0.093 4.093 6 C -0.015 4.015 7 C 0.172 3.828 8 N -0.402 5.402 9 O 0.066 5.934 10 C 0.221 3.779 11 C -0.018 4.018 12 S -0.153 6.153 13 C -0.535 4.535 14 H 0.092 0.908 15 C 0.016 3.984 16 N -0.910 5.910 17 Si 1.000 3.000 18 H -0.255 1.255 19 H -0.275 1.275 20 H -0.275 1.275 21 N -0.494 5.494 22 H 0.056 0.944 23 H 0.093 0.907 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 -21.527 5.347 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.222 4.222 3 S -0.110 6.110 4 C -0.211 4.211 5 C -0.133 4.133 6 C -0.055 4.055 7 C -0.102 4.102 8 N -0.114 5.114 9 O 0.011 5.989 10 C 0.000 4.000 11 C -0.168 4.168 12 S 0.073 5.927 13 C -0.683 4.683 14 H 0.110 0.890 15 C -0.189 4.189 16 N -0.546 5.546 17 Si 0.822 3.178 18 H -0.178 1.178 19 H -0.201 1.201 20 H -0.200 1.200 21 N -0.229 5.229 22 H 0.075 0.925 23 H 0.111 0.889 24 H 0.076 0.924 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.290 -21.073 6.158 22.370 hybrid contribution 2.126 0.294 -0.895 2.326 sum -2.164 -20.778 5.263 21.544 Atomic orbital electron populations 1.21544 0.91829 1.03605 1.02580 1.23351 1.00453 0.92424 1.05989 1.87511 1.08333 1.16860 1.98301 1.23233 0.91100 0.99764 1.06972 1.21152 0.92966 0.96489 1.02715 1.20115 0.92800 0.85680 1.06909 1.26463 0.99552 1.01175 0.82961 1.74565 1.16525 0.95769 1.24571 1.85275 1.57834 1.31013 1.24747 1.28071 0.94654 0.95449 0.81811 1.21770 1.01977 0.92412 1.00592 1.85300 1.15351 1.20927 1.71099 1.23126 0.98859 1.07393 1.38889 0.89024 1.26111 0.96105 0.99741 0.96962 1.70156 1.11116 1.28602 1.44761 0.84875 0.78619 0.77001 0.77317 1.17849 1.20096 1.20004 1.71952 1.16937 1.04203 1.29838 0.92501 0.88870 0.92370 0.88942 0.88779 0.87933 0.87709 0.92157 0.92337 0.86437 0.86441 0.85764 0.85836 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.92 71.98 0.71 -0.88 16 2 C -0.07 -0.94 6.66 71.98 0.48 -0.46 16 3 S -0.34 -6.95 21.74 -56.49 -1.23 -8.18 16 4 C -0.06 -0.99 5.94 71.98 0.43 -0.57 16 5 C -0.09 -2.03 5.20 30.60 0.16 -1.87 16 6 C -0.01 -0.30 5.84 29.85 0.17 -0.13 16 7 C 0.17 5.36 7.47 138.46 1.03 6.39 16 8 N -0.40 -13.82 12.16 -60.31 -0.73 -14.55 16 9 O 0.07 2.40 11.31 74.85 0.85 3.24 16 10 C 0.22 8.16 7.77 88.38 0.69 8.85 16 11 C -0.02 -0.70 6.30 71.24 0.45 -0.25 16 12 S -0.15 -7.82 21.42 -56.49 -1.21 -9.03 16 13 C -0.53 -28.73 9.50 67.95 0.65 -28.08 16 14 H 0.09 4.55 7.80 -2.91 -0.02 4.53 16 15 C 0.02 0.87 5.49 84.86 0.47 1.33 16 16 N -0.91 -53.46 13.22 21.65 0.29 -53.17 16 17 Si 1.00 41.88 29.55 68.60 2.03 43.91 16 18 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 19 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 21 N -0.49 -17.81 11.55 -303.18 -3.50 -21.31 16 22 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.12 4.15 8.14 -2.40 -0.02 4.13 16 34 H 0.12 4.37 8.14 -2.39 -0.02 4.35 16 35 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -67.57 334.33 2.80 -64.77 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.07 Total: 9.99 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 5.24 Total: -15.68 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -3.95 Total: -89.03 kcal Atomic # 8 Polarization: 2.40 SS G_CDS: 0.85 Total: 3.24 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: -14.77 SS G_CDS: -2.44 Total: -17.21 kcal Total: -67.57 2.80 -64.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350979451.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.038 kcal (2) G-P(sol) polarization free energy of solvation -67.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds