Wall clock time and date at job start Tue Mar 31 2020 05:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47324 * 79.75246 * 3 2 1 5 5 C 1.36886 * 120.00022 * 85.20216 * 4 3 2 6 6 H 1.08000 * 119.99873 * 184.40469 * 5 4 3 7 7 C 1.39030 * 119.99849 * 4.40681 * 5 4 3 8 8 N 1.31373 * 120.00314 * 325.34306 * 7 5 4 9 9 Si 1.86806 * 119.99984 * 145.34395 * 7 5 4 10 10 H 1.48500 * 109.46917 * 94.99979 * 9 7 5 11 11 H 1.48498 * 109.47169 * 215.00241 * 9 7 5 12 12 H 1.48504 * 109.46814 * 334.99936 * 9 7 5 13 13 C 1.34778 * 119.99899 * 265.20569 * 4 3 2 14 14 O 1.21631 * 119.99875 * 4.00327 * 13 4 3 15 15 C 1.47416 * 119.99740 * 184.00261 * 13 4 3 16 16 C 1.39506 * 120.23903 * 305.05476 * 15 13 4 17 17 C 1.38466 * 120.24457 * 180.02562 * 16 15 13 18 18 F 1.35098 * 119.65976 * 180.02562 * 17 16 15 19 19 C 1.38087 * 120.68196 * 359.97412 * 17 16 15 20 20 C 1.39707 * 120.09615 * 0.02562 * 19 17 16 21 21 N 1.35856 * 133.47623 * 180.02562 * 20 19 17 22 22 C 1.30102 * 109.54802 * 180.02562 * 21 20 19 23 23 N 1.36091 * 110.04963 * 359.97438 * 22 21 20 24 24 H 0.97007 * 126.31768 * 180.02562 * 23 22 21 25 25 C 1.37596 * 107.37082 * 359.74540 * 23 22 21 26 26 H 1.09005 * 109.47555 * 319.75036 * 3 2 1 27 27 H 1.08996 * 109.47023 * 199.74936 * 3 2 1 28 28 H 0.97000 * 120.00234 * 179.97438 * 8 7 5 29 29 H 1.07997 * 119.87783 * 359.97438 * 16 15 13 30 30 H 1.07996 * 119.94845 * 180.02562 * 19 17 16 31 31 H 1.07999 * 124.97449 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.2448 -1.3592 5 6 3.2307 0.7970 -2.2369 6 1 3.5225 0.6076 -3.2593 7 6 2.9915 2.0990 -1.8120 8 7 2.0573 2.3377 -0.9198 9 14 3.9986 3.5091 -2.5100 10 1 3.2682 4.1233 -3.6477 11 1 4.2190 4.5300 -1.4543 12 1 5.3091 2.9949 -2.9827 13 6 3.4137 -1.4965 -1.7455 14 8 3.2259 -2.4318 -0.9909 15 6 3.9882 -1.7320 -3.0825 16 6 3.3221 -1.2816 -4.2226 17 6 3.8614 -1.5031 -5.4785 18 9 3.2067 -1.0614 -6.5746 19 6 5.0620 -2.1700 -5.6223 20 6 5.7471 -2.6302 -4.4950 21 7 6.9162 -3.2998 -4.3204 22 6 7.1186 -3.4985 -3.0507 23 7 6.0946 -2.9699 -2.3267 24 1 6.0066 -2.9843 -1.3607 25 6 5.2103 -2.4057 -3.2171 26 1 2.9718 -0.7835 0.6640 27 1 2.9709 0.9680 0.3472 28 1 1.8907 3.2461 -0.6231 29 1 2.3821 -0.7589 -4.1253 30 1 5.4720 -2.3359 -6.6075 31 1 7.9744 -4.0075 -2.6324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355725504.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:12 Heat of formation + Delta-G solvation = 40.854341 kcal Electronic energy + Delta-G solvation = -22240.667080 eV Core-core repulsion = 18631.479094 eV Total energy + Delta-G solvation = -3609.187986 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.54604 -41.95498 -39.15445 -36.49372 -35.75953 -34.60820 -32.93026 -31.99655 -30.11089 -28.95766 -27.64404 -25.30430 -23.50988 -22.26236 -21.61524 -19.74558 -18.74523 -17.83800 -17.36838 -16.63764 -16.25916 -15.91956 -15.41239 -15.08416 -14.83132 -14.67908 -14.52565 -14.03901 -13.57368 -13.32455 -12.97554 -12.76683 -12.62761 -12.24793 -11.72933 -11.56269 -11.47979 -11.35851 -11.10998 -10.73931 -10.61050 -10.54355 -10.32469 -10.11491 -9.41691 -8.97728 -8.48357 -8.09249 -7.87705 -6.90502 -4.18524 0.90713 1.57871 2.75397 2.95336 3.08327 3.10521 3.13503 3.37756 3.55042 3.92173 3.94691 4.00891 4.14105 4.44741 4.56922 4.80471 4.94052 5.27005 5.30888 5.44414 5.46967 5.64930 5.74887 6.08981 6.26095 6.36485 6.46141 6.50630 6.57557 7.01462 7.10157 7.15807 7.46147 7.91441 7.93372 8.64668 8.71655 8.96257 9.36821 10.14267 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.006857 C = 0.005958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.168714 B = 4082.449923 C = 4698.315710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.253 3.747 3 C 0.220 3.780 4 N -0.413 5.413 5 C -0.367 4.367 6 H 0.120 0.880 7 C 0.055 3.945 8 N -0.837 5.837 9 Si 0.907 3.093 10 H -0.274 1.274 11 H -0.277 1.277 12 H -0.263 1.263 13 C 0.481 3.519 14 O -0.599 6.599 15 C -0.035 4.035 16 C -0.101 4.101 17 C 0.090 3.910 18 F -0.138 7.138 19 C -0.103 4.103 20 C 0.062 3.938 21 N -0.499 5.499 22 C 0.261 3.739 23 N -0.587 5.587 24 H 0.429 0.571 25 C 0.076 3.924 26 H 0.095 0.905 27 H 0.131 0.869 28 H 0.280 0.720 29 H 0.153 0.847 30 H 0.139 0.861 31 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.904 -4.360 -2.024 11.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.065 4.065 3 C 0.093 3.907 4 N -0.129 5.129 5 C -0.493 4.493 6 H 0.137 0.863 7 C -0.154 4.154 8 N -0.471 5.471 9 Si 0.732 3.268 10 H -0.200 1.200 11 H -0.203 1.203 12 H -0.187 1.187 13 C 0.271 3.729 14 O -0.487 6.487 15 C -0.041 4.041 16 C -0.122 4.122 17 C 0.068 3.932 18 F -0.117 7.117 19 C -0.124 4.124 20 C -0.057 4.057 21 N -0.220 5.220 22 C -0.026 4.026 23 N -0.197 5.197 24 H 0.269 0.731 25 C -0.036 4.036 26 H 0.113 0.887 27 H 0.148 0.852 28 H 0.091 0.909 29 H 0.171 0.829 30 H 0.157 0.843 31 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 8.514 -4.835 -2.266 10.050 hybrid contribution 0.132 1.350 0.533 1.458 sum 8.646 -3.485 -1.733 9.482 Atomic orbital electron populations 1.80892 1.13576 1.12285 1.08604 1.29128 0.95167 0.89933 0.92317 1.18929 0.81745 1.04219 0.85764 1.43687 1.52325 1.06331 1.10603 1.19931 1.49168 0.84300 0.95878 0.86251 1.25243 0.94655 0.99034 0.96468 1.70108 1.23104 1.23144 1.30773 0.86232 0.81245 0.80246 0.79125 1.19956 1.20253 1.18715 1.17641 0.85667 0.82898 0.86734 1.90696 1.61312 1.41860 1.54857 1.18505 0.92245 0.98799 0.94532 1.21149 1.01792 0.99998 0.89245 1.17026 0.92510 1.00840 0.82800 1.91488 1.80440 1.87683 1.52080 1.19972 0.93883 1.00444 0.98135 1.18482 0.93684 1.02040 0.91460 1.70460 1.16025 1.19408 1.16096 1.25345 0.93018 0.97310 0.86931 1.43049 1.18960 1.47263 1.10451 0.73088 1.18641 0.93359 1.01245 0.90399 0.88686 0.85200 0.90927 0.82899 0.84321 0.76689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.62 18.54 42.16 0.78 -10.84 16 2 C 0.25 5.79 13.91 -20.76 -0.29 5.51 16 3 C 0.22 4.48 5.24 -6.83 -0.04 4.45 16 4 N -0.41 -8.97 2.59 -119.16 -0.31 -9.28 16 5 C -0.37 -8.14 8.56 -15.00 -0.13 -8.27 16 6 H 0.12 2.60 4.94 -52.49 -0.26 2.34 16 7 C 0.06 1.22 4.85 -17.45 -0.08 1.13 16 8 N -0.84 -19.12 9.45 55.50 0.52 -18.60 16 9 Si 0.91 17.46 29.67 -169.99 -5.04 12.41 16 10 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 11 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 12 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 13 C 0.48 10.27 7.13 -12.52 -0.09 10.18 16 14 O -0.60 -13.73 16.63 5.25 0.09 -13.64 16 15 C -0.03 -0.67 4.99 -104.95 -0.52 -1.20 16 16 C -0.10 -1.86 7.42 -39.02 -0.29 -2.15 16 17 C 0.09 1.51 7.27 -39.55 -0.29 1.22 16 18 F -0.14 -2.27 17.25 2.25 0.04 -2.23 16 19 C -0.10 -1.65 10.06 -39.09 -0.39 -2.04 16 20 C 0.06 1.04 7.22 -84.72 -0.61 0.43 16 21 N -0.50 -7.62 11.28 -12.05 -0.14 -7.75 16 22 C 0.26 3.07 12.97 -89.74 -1.16 1.90 16 23 N -0.59 -8.07 6.21 -11.55 -0.07 -8.14 16 24 H 0.43 5.16 8.96 -40.82 -0.37 4.79 16 25 C 0.08 1.32 7.02 -83.72 -0.59 0.73 16 26 H 0.10 1.74 7.34 -51.93 -0.38 1.36 16 27 H 0.13 2.59 6.08 -51.93 -0.32 2.27 16 28 H 0.28 6.11 8.31 -40.82 -0.34 5.77 16 29 H 0.15 2.91 7.31 -52.49 -0.38 2.52 16 30 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.22 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 288.63 15.07 4.35 4.35 Total: -1.00 -29.08 288.63 -5.95 -35.02 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -1.69 Total: 6.81 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: -4.48 Total: 11.88 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.79 Total: -54.61 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.09 Total: -13.64 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.04 Total: 12.41 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.08 -5.95 -35.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355725504.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.878 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds