Wall clock time and date at job start Tue Mar 31 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47324 * 79.75246 * 3 2 1 5 5 C 1.36886 * 120.00022 * 85.20216 * 4 3 2 6 6 H 1.08000 * 119.99873 * 184.40469 * 5 4 3 7 7 C 1.39030 * 119.99849 * 4.40681 * 5 4 3 8 8 N 1.31373 * 120.00314 * 325.34306 * 7 5 4 9 9 Si 1.86806 * 119.99984 * 145.34395 * 7 5 4 10 10 H 1.48500 * 109.46917 * 94.99979 * 9 7 5 11 11 H 1.48498 * 109.47169 * 215.00241 * 9 7 5 12 12 H 1.48504 * 109.46814 * 334.99936 * 9 7 5 13 13 C 1.34778 * 119.99899 * 265.20569 * 4 3 2 14 14 O 1.21631 * 119.99875 * 4.00327 * 13 4 3 15 15 C 1.47416 * 119.99740 * 184.00261 * 13 4 3 16 16 C 1.39506 * 120.23903 * 305.05476 * 15 13 4 17 17 C 1.38466 * 120.24457 * 180.02562 * 16 15 13 18 18 F 1.35098 * 119.65976 * 180.02562 * 17 16 15 19 19 C 1.38087 * 120.68196 * 359.97412 * 17 16 15 20 20 C 1.39707 * 120.09615 * 0.02562 * 19 17 16 21 21 N 1.35856 * 133.47623 * 180.02562 * 20 19 17 22 22 C 1.30102 * 109.54802 * 180.02562 * 21 20 19 23 23 N 1.36091 * 110.04963 * 359.97438 * 22 21 20 24 24 H 0.97007 * 126.31768 * 180.02562 * 23 22 21 25 25 C 1.37596 * 107.37082 * 359.74540 * 23 22 21 26 26 H 1.09005 * 109.47555 * 319.75036 * 3 2 1 27 27 H 1.08996 * 109.47023 * 199.74936 * 3 2 1 28 28 H 0.97000 * 120.00234 * 179.97438 * 8 7 5 29 29 H 1.07997 * 119.87783 * 359.97438 * 16 15 13 30 30 H 1.07996 * 119.94845 * 180.02562 * 19 17 16 31 31 H 1.07999 * 124.97449 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.2448 -1.3592 5 6 3.2307 0.7970 -2.2369 6 1 3.5225 0.6076 -3.2593 7 6 2.9915 2.0990 -1.8120 8 7 2.0573 2.3377 -0.9198 9 14 3.9986 3.5091 -2.5100 10 1 3.2682 4.1233 -3.6477 11 1 4.2190 4.5300 -1.4543 12 1 5.3091 2.9949 -2.9827 13 6 3.4137 -1.4965 -1.7455 14 8 3.2259 -2.4318 -0.9909 15 6 3.9882 -1.7320 -3.0825 16 6 3.3221 -1.2816 -4.2226 17 6 3.8614 -1.5031 -5.4785 18 9 3.2067 -1.0614 -6.5746 19 6 5.0620 -2.1700 -5.6223 20 6 5.7471 -2.6302 -4.4950 21 7 6.9162 -3.2998 -4.3204 22 6 7.1186 -3.4985 -3.0507 23 7 6.0946 -2.9699 -2.3267 24 1 6.0066 -2.9843 -1.3607 25 6 5.2103 -2.4057 -3.2171 26 1 2.9718 -0.7835 0.6640 27 1 2.9709 0.9680 0.3472 28 1 1.8907 3.2461 -0.6231 29 1 2.3821 -0.7589 -4.1253 30 1 5.4720 -2.3359 -6.6075 31 1 7.9744 -4.0075 -2.6324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355725504.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:11 Heat of formation + Delta-G solvation = 24.168599 kcal Electronic energy + Delta-G solvation = -22241.390628 eV Core-core repulsion = 18631.479094 eV Total energy + Delta-G solvation = -3609.911534 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.85335 -43.13646 -40.77464 -37.88547 -37.45617 -36.40311 -34.14782 -33.68649 -31.46090 -30.20749 -29.25029 -26.95813 -24.86264 -23.52812 -22.82908 -21.25433 -20.29225 -19.09508 -18.82291 -18.10647 -17.87764 -17.28326 -16.72699 -16.54169 -16.39658 -16.04220 -15.89650 -15.28971 -15.01957 -14.88955 -14.57898 -14.24713 -14.04659 -13.83941 -13.46381 -13.27275 -13.10028 -12.83052 -12.54318 -12.31739 -12.09882 -12.03237 -11.71108 -11.34349 -11.11478 -10.59426 -10.19605 -9.36084 -9.16997 -8.58747 -5.91476 -0.37821 0.26589 1.29657 1.51119 1.56306 1.61192 1.84703 1.94171 2.04463 2.17983 2.30658 2.60251 2.79650 2.92687 3.02322 3.49504 3.64571 3.77196 3.93571 4.09479 4.28613 4.36595 4.53853 4.59592 4.82369 4.90728 5.02442 5.17238 5.32393 5.43025 5.47202 5.72922 6.24114 6.44495 6.81091 6.89746 6.94787 7.28596 7.68651 8.46790 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.006857 C = 0.005958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.168714 B = 4082.449923 C = 4698.315710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.262 3.738 3 C 0.220 3.780 4 N -0.422 5.422 5 C -0.379 4.379 6 H 0.120 0.880 7 C 0.027 3.973 8 N -0.862 5.862 9 Si 0.966 3.034 10 H -0.282 1.282 11 H -0.273 1.273 12 H -0.262 1.262 13 C 0.483 3.517 14 O -0.619 6.619 15 C -0.056 4.056 16 C -0.110 4.110 17 C 0.085 3.915 18 F -0.138 7.138 19 C -0.093 4.093 20 C 0.054 3.946 21 N -0.527 5.527 22 C 0.293 3.707 23 N -0.586 5.586 24 H 0.437 0.563 25 C 0.060 3.940 26 H 0.117 0.883 27 H 0.137 0.863 28 H 0.281 0.719 29 H 0.137 0.863 30 H 0.162 0.838 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.373 -4.966 -2.341 13.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.055 4.055 3 C 0.094 3.906 4 N -0.138 5.138 5 C -0.505 4.505 6 H 0.137 0.863 7 C -0.180 4.180 8 N -0.498 5.498 9 Si 0.789 3.211 10 H -0.208 1.208 11 H -0.198 1.198 12 H -0.187 1.187 13 C 0.274 3.726 14 O -0.508 6.508 15 C -0.062 4.062 16 C -0.131 4.131 17 C 0.064 3.936 18 F -0.116 7.116 19 C -0.114 4.114 20 C -0.064 4.064 21 N -0.247 5.247 22 C 0.006 3.994 23 N -0.197 5.197 24 H 0.279 0.721 25 C -0.053 4.053 26 H 0.135 0.865 27 H 0.154 0.846 28 H 0.092 0.908 29 H 0.155 0.845 30 H 0.180 0.820 31 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 10.990 -5.443 -2.577 12.532 hybrid contribution -0.554 1.416 0.629 1.646 sum 10.436 -4.026 -1.947 11.354 Atomic orbital electron populations 1.80876 1.14682 1.13598 1.09784 1.29682 0.95749 0.88844 0.91269 1.19142 0.80213 1.05318 0.85935 1.43827 1.52549 1.06488 1.10913 1.20107 1.49495 0.84672 0.96229 0.86258 1.25823 0.94862 1.00485 0.96828 1.70156 1.23958 1.23562 1.32078 0.85356 0.79692 0.77827 0.78178 1.20774 1.19753 1.18653 1.17990 0.84903 0.82433 0.87292 1.90662 1.62013 1.42331 1.55764 1.18375 0.93659 1.00762 0.93439 1.21012 1.01494 1.00531 0.90087 1.16941 0.92982 1.01472 0.82210 1.91485 1.80550 1.87771 1.51830 1.20212 0.93031 0.98911 0.99213 1.18749 0.94327 1.02002 0.91322 1.70523 1.15574 1.20671 1.17961 1.26555 0.92803 0.94239 0.85771 1.43190 1.18743 1.46933 1.10794 0.72147 1.18706 0.93343 1.01519 0.91744 0.86544 0.84607 0.90821 0.84523 0.81998 0.70923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -25.33 18.54 20.00 0.37 -24.96 16 2 C 0.26 12.13 13.91 89.44 1.24 13.37 16 3 C 0.22 8.95 5.24 84.57 0.44 9.40 16 4 N -0.42 -18.36 2.59 -649.16 -1.68 -20.04 16 5 C -0.38 -16.89 8.56 84.09 0.72 -16.17 16 6 H 0.12 5.25 4.94 -2.91 -0.01 5.24 16 7 C 0.03 1.18 4.85 84.95 0.41 1.59 16 8 N -0.86 -39.44 9.45 21.68 0.20 -39.23 16 9 Si 0.97 35.53 29.67 68.60 2.04 37.57 16 10 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 11 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 12 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 13 C 0.48 20.67 7.13 86.66 0.62 21.29 16 14 O -0.62 -28.22 16.63 -4.13 -0.07 -28.29 16 15 C -0.06 -2.18 4.99 -20.08 -0.10 -2.28 16 16 C -0.11 -4.11 7.42 22.63 0.17 -3.95 16 17 C 0.09 2.84 7.27 22.29 0.16 3.00 16 18 F -0.14 -4.46 17.25 44.97 0.78 -3.68 16 19 C -0.09 -2.82 10.06 22.59 0.23 -2.59 16 20 C 0.05 1.72 7.22 39.41 0.28 2.00 16 21 N -0.53 -14.37 11.28 -192.05 -2.17 -16.54 16 22 C 0.29 5.67 12.97 180.04 2.34 8.00 16 23 N -0.59 -14.57 6.21 -190.44 -1.18 -15.75 16 24 H 0.44 9.44 8.96 -92.70 -0.83 8.61 16 25 C 0.06 2.00 7.02 39.25 0.28 2.28 16 26 H 0.12 4.19 7.34 -2.38 -0.02 4.17 16 27 H 0.14 5.39 6.08 -2.39 -0.01 5.38 16 28 H 0.28 12.26 8.31 -92.71 -0.77 11.49 16 29 H 0.14 5.43 7.31 -2.91 -0.02 5.41 16 30 H 0.16 4.05 8.06 -2.91 -0.02 4.02 16 31 H 0.28 1.65 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -62.37 288.63 5.48 -56.89 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.40 Total: 18.10 kcal Atomic # 6 Polarization: 29.16 SS G_CDS: 6.79 Total: 35.95 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -4.46 Total: -116.53 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.07 Total: -28.29 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.78 Total: -3.68 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.04 Total: 37.57 kcal Total: -62.37 5.48 -56.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355725504.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.056 kcal (2) G-P(sol) polarization free energy of solvation -62.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds