Wall clock time and date at job start Tue Mar 31 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31377 * 1 3 3 Si 1.86806 * 119.99763 * 2 1 4 4 H 1.48500 * 109.46918 * 275.86081 * 3 2 1 5 5 H 1.48501 * 109.46847 * 35.85799 * 3 2 1 6 6 H 1.48497 * 109.47283 * 155.85986 * 3 2 1 7 7 C 1.39027 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99688 * 347.29406 * 7 2 1 9 9 N 1.36898 * 120.00048 * 167.56022 * 7 2 1 10 10 C 1.34782 * 120.00226 * 316.76466 * 9 7 2 11 11 O 1.21607 * 119.99895 * 354.71401 * 10 9 7 12 12 C 1.47595 * 119.99820 * 174.71694 * 10 9 7 13 13 C 1.40052 * 119.97093 * 150.41236 * 12 10 9 14 14 C 1.36590 * 120.45678 * 179.71378 * 13 12 10 15 15 C 1.38822 * 120.21521 * 0.55690 * 14 13 12 16 16 O 1.35181 * 133.64380 * 179.72081 * 15 14 13 17 17 C 1.34388 * 108.25043 * 180.02562 * 16 15 14 18 18 O 1.35173 * 124.91161 * 180.02562 * 17 16 15 19 19 N 1.30596 * 110.18259 * 359.97438 * 17 16 15 20 20 C 1.36214 * 108.68126 * 0.02562 * 19 17 16 21 21 C 1.39203 * 133.66730 * 179.97438 * 20 19 17 22 22 C 1.46502 * 119.99813 * 136.75664 * 9 7 2 23 23 C 1.52994 * 117.49745 * 6.20838 * 22 9 7 24 24 C 1.52991 * 117.50247 * 297.58300 * 22 9 7 25 25 H 0.96998 * 120.00226 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.76991 * 359.97438 * 13 12 10 27 27 H 1.08000 * 119.89570 * 180.25731 * 14 13 12 28 28 H 0.96700 * 114.00010 * 269.97010 * 18 17 16 29 29 H 1.08000 * 120.26366 * 0.02562 * 21 20 19 30 30 H 1.09001 * 115.55026 * 151.90700 * 22 9 7 31 31 H 1.09000 * 117.50317 * 359.97438 * 23 22 9 32 32 H 1.09003 * 117.50300 * 145.01892 * 23 22 9 33 33 H 1.09001 * 117.50317 * 214.98024 * 24 22 9 34 34 H 1.09005 * 117.50289 * 359.97347 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.3714 2.1179 -1.3928 5 1 1.5124 2.6138 0.8202 6 1 3.6017 1.4078 0.5726 7 6 2.0090 -1.2040 0.0005 8 1 1.4888 -2.1277 0.2067 9 7 3.3539 -1.2179 -0.2548 10 6 3.8581 -0.4659 -1.2533 11 8 3.1100 0.1498 -1.9882 12 6 5.3183 -0.3898 -1.4547 13 6 5.8374 -0.1770 -2.7379 14 6 7.1868 -0.0991 -2.9347 15 6 8.0584 -0.2419 -1.8638 16 8 9.4050 -0.2193 -1.7474 17 6 9.7191 -0.4146 -0.4554 18 8 10.9772 -0.4540 0.0375 19 7 8.6331 -0.5598 0.2554 20 6 7.5546 -0.4618 -0.5709 21 6 6.1793 -0.5358 -0.3689 22 6 4.2450 -2.0501 0.5573 23 6 3.5992 -2.9895 1.5777 24 6 4.3377 -1.7362 2.0517 25 1 -0.4850 0.8400 -0.0004 26 1 5.1660 -0.0696 -3.5770 27 1 7.5771 0.0694 -3.9276 28 1 11.3700 -1.3376 0.0430 29 1 5.7829 -0.7043 0.6214 30 1 5.1508 -2.3947 0.0583 31 1 2.5113 -2.9880 1.6451 32 1 4.0800 -3.9524 1.7502 33 1 5.3043 -1.8745 2.5362 34 1 3.7360 -0.9101 2.4309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358480077.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:02 Heat of formation + Delta-G solvation = 30.533674 kcal Electronic energy + Delta-G solvation = -22796.028018 eV Core-core repulsion = 19277.560048 eV Total energy + Delta-G solvation = -3518.467970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.30180 -39.82502 -38.31584 -37.21724 -36.53443 -34.66787 -33.07894 -31.81758 -30.67355 -29.32732 -25.58807 -24.04239 -23.11790 -22.27526 -21.94248 -21.37164 -19.96239 -19.41179 -18.32263 -17.42357 -17.24108 -16.53478 -16.00142 -15.51834 -15.08709 -14.68697 -14.38118 -14.19043 -13.73894 -13.39656 -13.15159 -12.85988 -12.73930 -12.58258 -12.23593 -11.67943 -11.53717 -11.37949 -11.18323 -10.82142 -10.59569 -10.35432 -10.14270 -10.07356 -9.68237 -8.92576 -8.73158 -8.54353 -8.47330 -7.63438 -6.34119 -4.12004 0.59125 0.96028 1.76941 2.24123 3.10816 3.33562 3.41507 3.48551 3.61111 3.92778 4.18190 4.36347 4.42327 4.58020 4.76481 4.99728 5.02971 5.23694 5.27759 5.32156 5.38188 5.53318 5.57439 5.65964 5.97582 6.04857 6.12364 6.16923 6.26363 6.46449 6.54917 6.61850 6.78918 6.81432 7.40997 7.67412 7.81865 8.58057 8.72506 9.22928 9.60614 10.69154 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.022500 B = 0.005744 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.126368 B = 4873.185133 C = 5459.306699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.088 3.912 3 Si 0.915 3.085 4 H -0.254 1.254 5 H -0.308 1.308 6 H -0.278 1.278 7 C -0.335 4.335 8 H 0.103 0.897 9 N -0.417 5.417 10 C 0.481 3.519 11 O -0.540 6.540 12 C -0.100 4.100 13 C -0.042 4.042 14 C -0.100 4.100 15 C 0.023 3.977 16 O -0.227 6.227 17 C 0.403 3.597 18 O -0.409 6.409 19 N -0.454 5.454 20 C 0.021 3.979 21 C -0.048 4.048 22 C 0.051 3.949 23 C -0.170 4.170 24 C -0.200 4.200 25 H 0.276 0.724 26 H 0.153 0.847 27 H 0.139 0.861 28 H 0.417 0.583 29 H 0.159 0.841 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.764 -4.035 -0.827 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.122 4.122 3 Si 0.746 3.254 4 H -0.180 1.180 5 H -0.238 1.238 6 H -0.203 1.203 7 C -0.461 4.461 8 H 0.121 0.879 9 N -0.135 5.135 10 C 0.273 3.727 11 O -0.424 6.424 12 C -0.105 4.105 13 C -0.061 4.061 14 C -0.119 4.119 15 C -0.027 4.027 16 O -0.121 6.121 17 C 0.153 3.847 18 O -0.217 6.217 19 N -0.197 5.197 20 C -0.091 4.091 21 C -0.068 4.068 22 C -0.054 4.054 23 C -0.207 4.207 24 C -0.239 4.239 25 H 0.086 0.914 26 H 0.170 0.830 27 H 0.157 0.843 28 H 0.277 0.723 29 H 0.176 0.824 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 17.173 -3.175 -0.492 17.471 hybrid contribution 0.914 0.432 -0.546 1.149 sum 18.087 -2.744 -1.038 18.324 Atomic orbital electron populations 1.69667 1.06722 1.28615 1.44167 1.25370 0.95097 0.99679 0.92083 0.86212 0.78955 0.81761 0.78489 1.18009 1.23763 1.20332 1.18869 0.80260 0.95701 1.51294 0.87946 1.43088 1.06935 1.38442 1.25032 1.17881 0.86175 0.86225 0.82430 1.90616 1.58889 1.46861 1.46044 1.20295 0.95153 1.01627 0.93388 1.20896 0.93338 0.94614 0.97283 1.19509 0.90722 1.05090 0.96568 1.20194 0.79391 1.05375 0.97776 1.84415 1.23243 1.74286 1.30192 1.22384 0.87175 0.97472 0.77655 1.84913 1.21233 1.36349 1.79174 1.71032 0.96462 1.20735 1.31509 1.19454 0.93935 1.06724 0.88950 1.21193 0.88198 0.96216 1.01186 1.22125 0.96174 0.99375 0.87723 1.23199 1.01868 0.93293 1.02379 1.23373 1.01957 1.00872 0.97660 0.91393 0.82975 0.84269 0.72317 0.82397 0.86456 0.86972 0.89222 0.88975 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.28 13.95 55.50 0.77 -24.51 16 2 C 0.09 2.51 5.03 -17.45 -0.09 2.42 16 3 Si 0.91 24.17 24.41 -169.99 -4.15 20.02 16 4 H -0.25 -7.05 6.43 56.52 0.36 -6.69 16 5 H -0.31 -7.96 7.11 56.52 0.40 -7.56 16 6 H -0.28 -7.11 6.91 56.52 0.39 -6.72 16 7 C -0.34 -9.04 8.66 -15.00 -0.13 -9.17 16 8 H 0.10 2.85 6.97 -52.49 -0.37 2.49 16 9 N -0.42 -9.79 2.54 -108.88 -0.28 -10.06 16 10 C 0.48 11.39 5.18 -12.44 -0.06 11.32 16 11 O -0.54 -14.62 12.28 5.27 0.06 -14.56 16 12 C -0.10 -1.91 5.46 -104.99 -0.57 -2.48 16 13 C -0.04 -0.68 9.52 -39.50 -0.38 -1.05 16 14 C -0.10 -1.36 9.99 -39.96 -0.40 -1.76 16 15 C 0.02 0.34 7.42 -38.52 -0.29 0.06 16 16 O -0.23 -3.12 10.78 -20.29 -0.22 -3.34 16 17 C 0.40 5.20 9.53 52.24 0.50 5.70 16 18 O -0.41 -3.60 13.62 -40.51 -0.55 -4.15 16 19 N -0.45 -7.02 11.38 -12.82 -0.15 -7.17 16 20 C 0.02 0.35 7.22 -84.71 -0.61 -0.27 16 21 C -0.05 -0.85 7.63 -38.81 -0.30 -1.15 16 22 C 0.05 0.96 4.25 -67.94 -0.29 0.67 16 23 C -0.17 -2.83 9.82 -26.74 -0.26 -3.09 16 24 C -0.20 -3.36 9.05 -26.74 -0.24 -3.60 16 25 H 0.28 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.15 2.30 7.90 -52.49 -0.41 1.88 16 27 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.42 1.02 9.06 45.56 0.41 1.43 16 29 H 0.16 2.81 4.45 -52.49 -0.23 2.58 16 30 H 0.12 1.95 6.06 -51.93 -0.31 1.63 16 31 H 0.11 2.11 6.50 -51.93 -0.34 1.77 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 289.89 15.07 4.37 4.37 Total: -1.00 -34.13 289.89 -5.38 -39.51 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -2.13 Total: 2.29 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -3.12 Total: -2.41 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.35 Total: -41.74 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.71 Total: -22.05 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -4.15 Total: 20.02 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.13 -5.38 -39.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358480077.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.045 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds