Wall clock time and date at job start Tue Mar 31 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31377 * 1 3 3 Si 1.86806 * 119.99763 * 2 1 4 4 H 1.48500 * 109.46918 * 275.86081 * 3 2 1 5 5 H 1.48501 * 109.46847 * 35.85799 * 3 2 1 6 6 H 1.48497 * 109.47283 * 155.85986 * 3 2 1 7 7 C 1.39027 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99688 * 347.29406 * 7 2 1 9 9 N 1.36898 * 120.00048 * 167.56022 * 7 2 1 10 10 C 1.34782 * 120.00226 * 316.76466 * 9 7 2 11 11 O 1.21607 * 119.99895 * 354.71401 * 10 9 7 12 12 C 1.47595 * 119.99820 * 174.71694 * 10 9 7 13 13 C 1.40052 * 119.97093 * 150.41236 * 12 10 9 14 14 C 1.36590 * 120.45678 * 179.71378 * 13 12 10 15 15 C 1.38822 * 120.21521 * 0.55690 * 14 13 12 16 16 O 1.35181 * 133.64380 * 179.72081 * 15 14 13 17 17 C 1.34388 * 108.25043 * 180.02562 * 16 15 14 18 18 O 1.35173 * 124.91161 * 180.02562 * 17 16 15 19 19 N 1.30596 * 110.18259 * 359.97438 * 17 16 15 20 20 C 1.36214 * 108.68126 * 0.02562 * 19 17 16 21 21 C 1.39203 * 133.66730 * 179.97438 * 20 19 17 22 22 C 1.46502 * 119.99813 * 136.75664 * 9 7 2 23 23 C 1.52994 * 117.49745 * 6.20838 * 22 9 7 24 24 C 1.52991 * 117.50247 * 297.58300 * 22 9 7 25 25 H 0.96998 * 120.00226 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.76991 * 359.97438 * 13 12 10 27 27 H 1.08000 * 119.89570 * 180.25731 * 14 13 12 28 28 H 0.96700 * 114.00010 * 269.97010 * 18 17 16 29 29 H 1.08000 * 120.26366 * 0.02562 * 21 20 19 30 30 H 1.09001 * 115.55026 * 151.90700 * 22 9 7 31 31 H 1.09000 * 117.50317 * 359.97438 * 23 22 9 32 32 H 1.09003 * 117.50300 * 145.01892 * 23 22 9 33 33 H 1.09001 * 117.50317 * 214.98024 * 24 22 9 34 34 H 1.09005 * 117.50289 * 359.97347 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.3714 2.1179 -1.3928 5 1 1.5124 2.6138 0.8202 6 1 3.6017 1.4078 0.5726 7 6 2.0090 -1.2040 0.0005 8 1 1.4888 -2.1277 0.2067 9 7 3.3539 -1.2179 -0.2548 10 6 3.8581 -0.4659 -1.2533 11 8 3.1100 0.1498 -1.9882 12 6 5.3183 -0.3898 -1.4547 13 6 5.8374 -0.1770 -2.7379 14 6 7.1868 -0.0991 -2.9347 15 6 8.0584 -0.2419 -1.8638 16 8 9.4050 -0.2193 -1.7474 17 6 9.7191 -0.4146 -0.4554 18 8 10.9772 -0.4540 0.0375 19 7 8.6331 -0.5598 0.2554 20 6 7.5546 -0.4618 -0.5709 21 6 6.1793 -0.5358 -0.3689 22 6 4.2450 -2.0501 0.5573 23 6 3.5992 -2.9895 1.5777 24 6 4.3377 -1.7362 2.0517 25 1 -0.4850 0.8400 -0.0004 26 1 5.1660 -0.0696 -3.5770 27 1 7.5771 0.0694 -3.9276 28 1 11.3700 -1.3376 0.0430 29 1 5.7829 -0.7043 0.6214 30 1 5.1508 -2.3947 0.0583 31 1 2.5113 -2.9880 1.6451 32 1 4.0800 -3.9524 1.7502 33 1 5.3043 -1.8745 2.5362 34 1 3.7360 -0.9101 2.4309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358480077.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:02 Heat of formation + Delta-G solvation = 1.691273 kcal Electronic energy + Delta-G solvation = -22797.278718 eV Core-core repulsion = 19277.560048 eV Total energy + Delta-G solvation = -3519.718670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.41514 -41.46992 -39.27981 -38.42083 -38.16566 -35.79663 -35.01822 -33.61969 -32.10412 -30.54271 -27.40795 -25.39113 -24.34189 -23.55246 -23.37465 -22.70482 -21.58088 -20.37525 -19.82729 -18.78827 -18.48503 -18.03358 -17.43632 -17.33452 -16.26822 -16.00872 -15.81082 -15.51067 -15.36460 -15.08991 -14.81477 -14.55966 -14.03242 -13.75038 -13.60305 -13.50945 -12.92435 -12.64821 -12.56185 -12.46324 -12.20588 -12.06633 -11.79398 -11.49969 -11.29765 -10.93030 -10.66671 -9.94680 -9.64360 -9.47780 -8.49593 -6.26193 -0.50939 -0.35278 0.77268 1.12882 1.19520 1.28703 1.42888 1.79127 2.23759 2.30065 2.43974 2.60946 2.86421 3.19655 3.25847 3.52828 3.82052 3.93713 3.98491 4.00571 4.12008 4.15956 4.24383 4.54834 4.77175 4.83592 4.86652 4.91848 5.01868 5.17515 5.20442 5.34428 5.41350 5.62095 5.79541 6.21296 6.32740 6.61669 6.76824 7.19613 7.69857 8.57864 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.022500 B = 0.005744 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.126368 B = 4873.185133 C = 5459.306699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.046 3.954 3 Si 0.956 3.044 4 H -0.278 1.278 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.329 4.329 8 H 0.082 0.918 9 N -0.434 5.434 10 C 0.483 3.517 11 O -0.583 6.583 12 C -0.122 4.122 13 C -0.050 4.050 14 C -0.074 4.074 15 C 0.026 3.974 16 O -0.222 6.222 17 C 0.431 3.569 18 O -0.401 6.401 19 N -0.483 5.483 20 C 0.012 3.988 21 C -0.047 4.047 22 C 0.033 3.967 23 C -0.160 4.160 24 C -0.187 4.187 25 H 0.276 0.724 26 H 0.156 0.844 27 H 0.181 0.819 28 H 0.447 0.553 29 H 0.154 0.846 30 H 0.142 0.858 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.347 -4.644 -0.897 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.159 4.159 3 Si 0.787 3.213 4 H -0.205 1.205 5 H -0.233 1.233 6 H -0.194 1.194 7 C -0.456 4.456 8 H 0.100 0.900 9 N -0.152 5.152 10 C 0.276 3.724 11 O -0.470 6.470 12 C -0.127 4.127 13 C -0.069 4.069 14 C -0.092 4.092 15 C -0.025 4.025 16 O -0.116 6.116 17 C 0.180 3.820 18 O -0.214 6.214 19 N -0.227 5.227 20 C -0.099 4.099 21 C -0.067 4.067 22 C -0.071 4.071 23 C -0.197 4.197 24 C -0.225 4.225 25 H 0.086 0.914 26 H 0.174 0.826 27 H 0.198 0.802 28 H 0.314 0.686 29 H 0.172 0.828 30 H 0.160 0.840 31 H 0.102 0.898 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 21.811 -3.832 -0.520 22.151 hybrid contribution -0.140 0.526 -0.560 0.781 sum 21.672 -3.306 -1.079 21.949 Atomic orbital electron populations 1.69731 1.07606 1.28893 1.47692 1.25873 0.95513 1.01696 0.92803 0.85543 0.78705 0.80001 0.77005 1.20493 1.23275 1.19366 1.18730 0.82208 0.94521 1.50185 0.89992 1.43212 1.06336 1.39373 1.26271 1.18628 0.88175 0.84271 0.81353 1.90570 1.60695 1.48336 1.47386 1.19941 0.92282 1.04992 0.95483 1.20959 0.94656 0.95137 0.96131 1.19783 0.89262 1.02119 0.98083 1.20366 0.80032 1.04589 0.97514 1.84464 1.22336 1.74134 1.30666 1.22576 0.88048 0.94225 0.77110 1.84906 1.19154 1.39002 1.78335 1.71047 0.96778 1.22987 1.31861 1.19427 0.93658 1.06748 0.90046 1.20999 0.88840 0.96387 1.00455 1.22393 0.96513 0.99928 0.88256 1.23253 1.00549 0.95079 1.00858 1.23395 1.03191 0.99959 0.95966 0.91440 0.82624 0.80165 0.68640 0.82837 0.84045 0.89830 0.85180 0.85273 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.86 13.95 21.68 0.30 -55.56 16 2 C 0.05 2.75 5.03 84.95 0.43 3.18 16 3 Si 0.96 51.68 24.41 68.60 1.67 53.35 16 4 H -0.28 -15.92 6.43 99.48 0.64 -15.28 16 5 H -0.30 -15.81 7.11 99.48 0.71 -15.10 16 6 H -0.27 -13.81 6.91 99.48 0.69 -13.12 16 7 C -0.33 -18.49 8.66 84.09 0.73 -17.76 16 8 H 0.08 4.83 6.97 -2.91 -0.02 4.81 16 9 N -0.43 -20.72 2.54 -616.65 -1.56 -22.29 16 10 C 0.48 23.17 5.18 86.71 0.45 23.62 16 11 O -0.58 -32.55 12.28 -4.05 -0.05 -32.59 16 12 C -0.12 -4.57 5.46 -20.10 -0.11 -4.68 16 13 C -0.05 -1.50 9.52 22.32 0.21 -1.29 16 14 C -0.07 -1.73 9.99 22.02 0.22 -1.51 16 15 C 0.03 0.67 7.42 22.96 0.17 0.84 16 16 O -0.22 -5.04 10.78 10.08 0.11 -4.94 16 17 C 0.43 9.17 9.53 130.43 1.24 10.41 16 18 O -0.40 -5.05 13.62 -62.26 -0.85 -5.90 16 19 N -0.48 -13.18 11.38 -422.84 -4.81 -18.00 16 20 C 0.01 0.37 7.22 39.24 0.28 0.65 16 21 C -0.05 -1.58 7.63 22.77 0.17 -1.41 16 22 C 0.03 1.20 4.25 44.99 0.19 1.39 16 23 C -0.16 -5.14 9.82 30.59 0.30 -4.84 16 24 C -0.19 -5.99 9.05 30.59 0.28 -5.72 16 25 H 0.28 16.16 8.31 -92.71 -0.77 15.39 16 26 H 0.16 4.53 7.90 -2.91 -0.02 4.51 16 27 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 28 H 0.45 -0.25 9.06 -74.06 -0.67 -0.92 16 29 H 0.15 5.20 4.45 -2.91 -0.01 5.19 16 30 H 0.14 4.42 6.06 -2.39 -0.01 4.40 16 31 H 0.08 3.21 6.50 -2.39 -0.02 3.19 16 32 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.07 2.82 8.14 -2.38 -0.02 2.81 16 Total: -1.00 -78.00 289.89 -0.19 -78.20 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 0.43 Total: 4.84 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 4.57 Total: 2.88 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -6.07 Total: -95.84 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.79 Total: -43.43 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 1.67 Total: 53.35 kcal Total: -78.00 -0.19 -78.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358480077.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.887 kcal (2) G-P(sol) polarization free energy of solvation -78.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds