Wall clock time and date at job start Tue Mar 31 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00095 * 2 1 4 4 H 1.48501 * 109.46979 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47044 * 300.00050 * 3 2 1 6 6 H 1.48499 * 109.46975 * 60.00371 * 3 2 1 7 7 C 1.37880 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99816 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99813 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46830 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47191 * 180.02562 * 10 9 7 12 12 N 1.30967 * 126.43538 * 90.29610 * 11 10 9 13 13 C 1.35240 * 105.57985 * 180.14196 * 12 11 10 14 14 C 1.48337 * 126.41623 * 179.84665 * 13 12 11 15 15 C 1.39375 * 120.06125 * 359.69495 * 14 13 12 16 16 C 1.37941 * 120.02956 * 180.02562 * 15 14 13 17 17 C 1.38716 * 120.18416 * 359.96362 * 16 15 14 18 18 C 1.39411 * 120.01994 * 0.03455 * 17 16 15 19 19 C 1.38288 * 119.95269 * 359.97438 * 18 17 16 20 20 O 1.36532 * 108.61898 * 180.02562 * 18 17 16 21 21 C 1.43976 * 105.47049 * 17.30834 * 20 18 17 22 22 O 1.36475 * 131.38182 * 180.02562 * 17 16 15 23 23 N 1.30804 * 107.15924 * 359.58373 * 13 12 11 24 24 O 1.21286 * 110.09342 * 0.26342 * 23 13 12 25 25 H 0.97002 * 119.99843 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47360 * 60.00160 * 9 7 2 27 27 H 1.09000 * 109.47626 * 299.99987 * 9 7 2 28 28 H 1.09002 * 109.47248 * 60.00213 * 10 9 7 29 29 H 1.09000 * 109.47037 * 299.99753 * 10 9 7 30 30 H 1.08000 * 119.98690 * 359.97438 * 15 14 13 31 31 H 1.07999 * 119.90892 * 179.97438 * 16 15 14 32 32 H 1.07995 * 120.03849 * 179.97438 * 19 18 17 33 33 H 1.09003 * 110.56969 * 214.25593 * 21 20 18 34 34 H 1.08998 * 110.57268 * 91.39168 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4916 -4.9672 -0.0012 12 7 1.1078 -5.6433 -1.0551 13 6 0.4707 -6.7350 -0.5742 14 6 -0.1532 -7.8153 -1.3768 15 6 -0.1207 -7.7585 -2.7690 16 6 -0.7017 -8.7631 -3.5146 17 6 -1.3189 -9.8327 -2.8828 18 6 -1.3542 -9.8945 -1.4905 19 6 -0.7730 -8.8890 -0.7398 20 8 -2.0108 -11.0332 -1.1212 21 6 -2.0170 -11.8700 -2.2928 22 8 -1.9538 -10.9321 -3.3835 23 7 0.5129 -6.6627 0.7311 24 8 1.0947 -5.6552 1.0740 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8902 27 1 0.6246 -2.5571 0.8897 28 1 2.8718 -3.6044 0.8895 29 1 2.8718 -3.6044 -0.8905 30 1 0.3587 -6.9271 -3.2642 31 1 -0.6757 -8.7169 -4.5933 32 1 -0.8000 -8.9352 0.3388 33 1 -2.9368 -12.4530 -2.3422 34 1 -1.1462 -12.5255 -2.2999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359919401.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:35 Heat of formation + Delta-G solvation = 25.284594 kcal Electronic energy + Delta-G solvation = -21097.274502 eV Core-core repulsion = 17578.578916 eV Total energy + Delta-G solvation = -3518.695587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.17835 -42.44432 -38.35326 -36.59749 -35.54456 -34.44861 -32.67335 -31.10912 -30.40727 -29.80395 -26.31033 -25.88957 -24.52950 -23.53126 -22.64361 -21.94145 -20.61837 -18.38627 -18.16155 -17.73489 -17.61579 -16.84931 -16.42520 -16.29192 -15.04516 -14.76253 -14.55789 -14.19548 -14.13055 -13.88727 -13.43212 -13.33686 -13.27512 -12.77950 -12.46393 -12.11346 -12.00047 -11.58159 -11.47948 -11.03531 -10.97749 -10.75969 -10.67421 -10.17139 -10.13533 -9.45868 -9.29460 -9.06151 -8.47516 -8.24329 -6.11497 -4.16346 0.47076 0.94176 1.61808 2.34034 2.60678 3.06117 3.23775 3.26910 3.35027 3.38102 3.45900 3.71131 4.14629 4.20203 4.32944 4.38707 4.55194 4.81167 4.91656 4.98694 5.19113 5.25360 5.27840 5.65662 5.75432 5.79765 5.92068 6.02048 6.08086 6.17475 6.21258 6.33418 6.57987 6.78418 7.46578 7.52927 7.83980 8.18920 8.44710 8.89216 9.48886 10.99747 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.038650 B = 0.002751 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.280992 B =10175.104944 C =10475.612339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.029 4.029 11 C 0.221 3.779 12 N -0.487 5.487 13 C 0.204 3.796 14 C 0.000 4.000 15 C -0.062 4.062 16 C -0.101 4.101 17 C 0.045 3.955 18 C 0.027 3.973 19 C -0.068 4.068 20 O -0.307 6.307 21 C 0.213 3.787 22 O -0.307 6.307 23 N -0.386 5.386 24 O 0.076 5.924 25 H 0.263 0.737 26 H 0.027 0.973 27 H 0.024 0.976 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.155 0.845 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.132 0.868 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.876 -21.092 -4.984 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.068 4.068 11 C 0.002 3.998 12 N -0.220 5.220 13 C -0.066 4.066 14 C -0.002 4.002 15 C -0.082 4.082 16 C -0.120 4.120 17 C -0.001 4.001 18 C -0.017 4.017 19 C -0.088 4.088 20 O -0.223 6.223 21 C 0.101 3.899 22 O -0.223 6.223 23 N -0.095 5.095 24 O 0.017 5.983 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.173 0.827 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.150 0.850 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.598 -21.785 -4.881 22.382 hybrid contribution 0.242 0.792 0.093 0.833 sum -1.356 -20.993 -4.789 21.575 Atomic orbital electron populations 1.69976 1.06162 1.26905 1.49862 1.25018 0.94870 0.99478 0.94910 0.86453 0.80048 0.83354 0.77662 1.19551 1.20935 1.20939 1.21095 0.93201 0.90153 1.51923 0.91940 1.19177 0.93581 0.89814 0.98573 1.20814 0.97989 0.83446 1.04593 1.29612 0.93883 0.96914 0.79359 1.72012 1.16450 1.04696 1.28840 1.23558 1.00073 0.95241 0.87742 1.16876 1.00203 0.91241 0.91865 1.21066 0.97297 0.97979 0.91817 1.20017 0.98896 0.92069 1.01022 1.19988 0.97504 0.91634 0.90930 1.19434 0.99147 0.91265 0.91838 1.19921 0.96775 0.91351 1.00754 1.87390 1.72708 1.26645 1.35544 1.25656 1.04409 0.88996 0.70837 1.87365 1.73855 1.25069 1.36026 1.74826 1.15782 1.04156 1.14747 1.85270 1.52091 1.24705 1.36227 0.92772 0.95444 0.95737 0.88889 0.88012 0.82746 0.83787 0.83850 0.85026 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -13.74 9.11 -34.44 -0.31 -14.05 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.64 4.96 -27.88 -0.14 0.50 16 10 C -0.03 -0.54 5.78 -27.88 -0.16 -0.70 16 11 C 0.22 4.05 7.75 -12.99 -0.10 3.95 16 12 N -0.49 -8.93 11.25 -9.87 -0.11 -9.04 16 13 C 0.20 3.51 7.80 -156.10 -1.22 2.30 16 14 C 0.00 0.00 5.88 -104.89 -0.62 -0.61 16 15 C -0.06 -0.76 9.69 -39.27 -0.38 -1.14 16 16 C -0.10 -1.09 10.04 -39.51 -0.40 -1.49 16 17 C 0.04 0.52 7.15 -38.97 -0.28 0.25 16 18 C 0.03 0.34 7.14 -39.13 -0.28 0.06 16 19 C -0.07 -0.91 9.70 -39.14 -0.38 -1.29 16 20 O -0.31 -3.49 11.40 -45.79 -0.52 -4.01 16 21 C 0.21 1.64 8.89 101.05 0.90 2.54 16 22 O -0.31 -3.25 11.40 -45.61 -0.52 -3.77 16 23 N -0.39 -6.93 11.85 30.97 0.37 -6.56 16 24 O 0.08 1.39 11.29 18.03 0.20 1.59 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 30 H 0.15 1.83 7.87 -52.49 -0.41 1.41 16 31 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.14 1.90 7.86 -52.49 -0.41 1.48 16 33 H 0.13 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 309.38 15.07 4.66 4.66 Total: -1.00 -30.84 309.38 -6.99 -37.83 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: -3.33 Total: -3.07 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -3.46 Total: -8.16 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.99 Total: -40.68 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.84 Total: -6.19 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.84 -6.99 -37.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359919401.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.119 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds