Wall clock time and date at job start Tue Mar 31 2020 06:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00095 * 2 1 4 4 H 1.48501 * 109.46979 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47044 * 300.00050 * 3 2 1 6 6 H 1.48499 * 109.46975 * 60.00371 * 3 2 1 7 7 C 1.37880 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99816 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99813 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46830 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47191 * 180.02562 * 10 9 7 12 12 N 1.30967 * 126.43538 * 90.29610 * 11 10 9 13 13 C 1.35240 * 105.57985 * 180.14196 * 12 11 10 14 14 C 1.48337 * 126.41623 * 179.84665 * 13 12 11 15 15 C 1.39375 * 120.06125 * 359.69495 * 14 13 12 16 16 C 1.37941 * 120.02956 * 180.02562 * 15 14 13 17 17 C 1.38716 * 120.18416 * 359.96362 * 16 15 14 18 18 C 1.39411 * 120.01994 * 0.03455 * 17 16 15 19 19 C 1.38288 * 119.95269 * 359.97438 * 18 17 16 20 20 O 1.36532 * 108.61898 * 180.02562 * 18 17 16 21 21 C 1.43976 * 105.47049 * 17.30834 * 20 18 17 22 22 O 1.36475 * 131.38182 * 180.02562 * 17 16 15 23 23 N 1.30804 * 107.15924 * 359.58373 * 13 12 11 24 24 O 1.21286 * 110.09342 * 0.26342 * 23 13 12 25 25 H 0.97002 * 119.99843 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47360 * 60.00160 * 9 7 2 27 27 H 1.09000 * 109.47626 * 299.99987 * 9 7 2 28 28 H 1.09002 * 109.47248 * 60.00213 * 10 9 7 29 29 H 1.09000 * 109.47037 * 299.99753 * 10 9 7 30 30 H 1.08000 * 119.98690 * 359.97438 * 15 14 13 31 31 H 1.07999 * 119.90892 * 179.97438 * 16 15 14 32 32 H 1.07995 * 120.03849 * 179.97438 * 19 18 17 33 33 H 1.09003 * 110.56969 * 214.25593 * 21 20 18 34 34 H 1.08998 * 110.57268 * 91.39168 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4916 -4.9672 -0.0012 12 7 1.1078 -5.6433 -1.0551 13 6 0.4707 -6.7350 -0.5742 14 6 -0.1532 -7.8153 -1.3768 15 6 -0.1207 -7.7585 -2.7690 16 6 -0.7017 -8.7631 -3.5146 17 6 -1.3189 -9.8327 -2.8828 18 6 -1.3542 -9.8945 -1.4905 19 6 -0.7730 -8.8890 -0.7398 20 8 -2.0108 -11.0332 -1.1212 21 6 -2.0170 -11.8700 -2.2928 22 8 -1.9538 -10.9321 -3.3835 23 7 0.5129 -6.6627 0.7311 24 8 1.0947 -5.6552 1.0740 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8902 27 1 0.6246 -2.5571 0.8897 28 1 2.8718 -3.6044 0.8895 29 1 2.8718 -3.6044 -0.8905 30 1 0.3587 -6.9271 -3.2642 31 1 -0.6757 -8.7169 -4.5933 32 1 -0.8000 -8.9352 0.3388 33 1 -2.9368 -12.4530 -2.3422 34 1 -1.1462 -12.5255 -2.2999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359919401.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:34 Heat of formation + Delta-G solvation = 5.321666 kcal Electronic energy + Delta-G solvation = -21098.140160 eV Core-core repulsion = 17578.578916 eV Total energy + Delta-G solvation = -3519.561244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.57718 -43.27391 -39.33070 -37.42400 -36.98540 -36.08083 -34.40462 -32.42444 -31.54811 -31.02304 -27.73501 -27.03052 -25.69262 -24.79893 -23.80351 -23.43359 -22.02369 -19.48479 -19.15794 -19.03957 -18.49000 -18.45182 -17.80113 -17.33507 -16.47824 -16.10740 -15.68120 -15.54918 -15.05503 -14.96058 -14.91646 -14.32479 -14.24932 -14.11761 -13.87456 -13.59579 -13.37828 -13.06559 -12.83623 -12.57845 -12.47022 -12.12186 -12.08725 -11.91642 -11.69832 -11.29652 -10.91889 -10.55377 -10.06350 -9.19547 -8.18304 -6.29822 -0.60601 0.00343 0.24657 1.23083 1.47369 1.48344 1.60591 1.61212 1.82088 2.23778 2.43083 2.45917 2.59018 2.90358 3.17625 3.24475 3.73175 3.81275 3.92696 3.98579 4.10897 4.18288 4.36600 4.41131 4.51979 4.55901 4.73221 4.81192 4.87784 4.95446 5.05862 5.16270 5.21147 5.47174 5.56443 5.80525 5.92582 6.15684 6.86601 7.04335 7.40417 8.94319 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.038650 B = 0.002751 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.280992 B =10175.104944 C =10475.612339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.253 1.253 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.535 4.535 8 H 0.080 0.920 9 C 0.032 3.968 10 C -0.014 4.014 11 C 0.216 3.784 12 N -0.496 5.496 13 C 0.208 3.792 14 C -0.027 4.027 15 C -0.058 4.058 16 C -0.093 4.093 17 C 0.050 3.950 18 C 0.021 3.979 19 C -0.074 4.074 20 O -0.322 6.322 21 C 0.203 3.797 22 O -0.313 6.313 23 N -0.400 5.400 24 O 0.069 5.931 25 H 0.263 0.737 26 H -0.005 1.005 27 H -0.003 1.003 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.159 0.841 31 H 0.175 0.825 32 H 0.137 0.863 33 H 0.167 0.833 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.067 -22.170 -6.137 23.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.177 1.177 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.573 4.573 8 H 0.098 0.902 9 C -0.006 4.006 10 C -0.053 4.053 11 C -0.003 4.003 12 N -0.230 5.230 13 C -0.062 4.062 14 C -0.029 4.029 15 C -0.078 4.078 16 C -0.111 4.111 17 C 0.004 3.996 18 C -0.024 4.024 19 C -0.095 4.095 20 O -0.238 6.238 21 C 0.093 3.907 22 O -0.229 6.229 23 N -0.110 5.110 24 O 0.012 5.988 25 H 0.072 0.928 26 H 0.014 0.986 27 H 0.016 0.984 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.176 0.824 31 H 0.193 0.807 32 H 0.155 0.845 33 H 0.184 0.816 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.634 -22.880 -6.024 23.668 hybrid contribution -0.151 0.938 0.393 1.028 sum -0.784 -21.943 -5.630 22.667 Atomic orbital electron populations 1.70124 1.08079 1.27820 1.51579 1.25996 0.95651 1.03590 0.94683 0.85338 0.79464 0.78519 0.77352 1.17677 1.20937 1.20898 1.21600 0.94216 0.90898 1.50551 0.90217 1.18969 0.94032 0.91909 0.95732 1.20582 0.96691 0.81319 1.06688 1.29548 0.94072 0.97090 0.79600 1.72002 1.16750 1.05173 1.29031 1.24039 0.99152 0.95322 0.87704 1.16976 1.01974 0.91310 0.92620 1.21155 0.97136 0.98510 0.90959 1.20270 0.97545 0.90917 1.02359 1.20176 0.96778 0.92011 0.90615 1.19471 0.99115 0.91508 0.92288 1.19843 0.97300 0.91707 1.00610 1.87373 1.72451 1.26639 1.37368 1.26255 1.07533 0.88127 0.68798 1.87360 1.73426 1.25018 1.37059 1.74811 1.16554 1.04345 1.15310 1.85250 1.52337 1.24928 1.36256 0.92832 0.98612 0.98437 0.86376 0.86356 0.82370 0.80740 0.84484 0.81614 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.48 13.29 21.45 0.28 -55.19 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.97 42.05 29.54 68.60 2.03 44.08 16 4 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.53 -27.82 9.11 25.60 0.23 -27.59 16 8 H 0.08 3.79 7.74 -2.91 -0.02 3.77 16 9 C 0.03 1.56 4.96 29.85 0.15 1.71 16 10 C -0.01 -0.51 5.78 29.85 0.17 -0.34 16 11 C 0.22 7.97 7.75 88.36 0.68 8.65 16 12 N -0.50 -18.31 11.25 -302.44 -3.40 -21.71 16 13 C 0.21 7.26 7.80 137.25 1.07 8.33 16 14 C -0.03 -0.77 5.88 -20.04 -0.12 -0.89 16 15 C -0.06 -1.37 9.69 22.47 0.22 -1.15 16 16 C -0.09 -1.80 10.04 22.31 0.22 -1.57 16 17 C 0.05 1.07 7.15 22.67 0.16 1.24 16 18 C 0.02 0.50 7.14 22.56 0.16 0.66 16 19 C -0.07 -2.00 9.70 22.56 0.22 -1.78 16 20 O -0.32 -6.83 11.40 -76.43 -0.87 -7.70 16 21 C 0.20 2.56 8.89 113.37 1.01 3.57 16 22 O -0.31 -5.77 11.40 -75.75 -0.86 -6.64 16 23 N -0.40 -14.64 11.85 -59.07 -0.70 -15.34 16 24 O 0.07 2.55 11.29 74.57 0.84 3.39 16 25 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 26 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 29 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 30 H 0.16 3.60 7.87 -2.91 -0.02 3.57 16 31 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.14 3.76 7.86 -2.91 -0.02 3.73 16 33 H 0.17 0.89 8.14 -2.39 -0.02 0.88 16 34 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -67.37 309.38 3.10 -64.27 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: 1.14 Total: 3.61 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 4.64 Total: -8.77 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -3.82 Total: -92.24 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.89 Total: -10.95 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -67.37 3.10 -64.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359919401.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.591 kcal (2) G-P(sol) polarization free energy of solvation -67.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds