Wall clock time and date at job start Tue Mar 31 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65594 * 120.00179 * 2 1 4 4 O 1.42107 * 106.40294 * 311.45936 * 3 2 1 5 5 O 1.42100 * 106.40357 * 178.54215 * 3 2 1 6 6 C 1.76199 * 107.21796 * 65.00069 * 3 2 1 7 7 C 1.38271 * 119.91586 * 270.01891 * 6 3 2 8 8 C 1.38161 * 120.11044 * 180.02562 * 7 6 3 9 9 C 1.38829 * 119.94806 * 359.95897 * 8 7 6 10 10 N 1.39845 * 120.07970 * 180.29781 * 9 8 7 11 11 C 1.46493 * 119.99915 * 359.72638 * 10 9 8 12 12 C 1.50701 * 109.47159 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99801 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99757 * 179.97438 * 14 12 11 16 16 Si 1.86791 * 119.99964 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47527 * 90.00185 * 16 14 12 18 18 H 1.48506 * 109.47244 * 210.00122 * 16 14 12 19 19 H 1.48499 * 109.47495 * 329.99842 * 16 14 12 20 20 C 1.39085 * 119.83815 * 0.02562 * 9 8 7 21 21 F 1.35095 * 120.05140 * 180.02562 * 20 9 8 22 22 C 1.38271 * 119.88868 * 0.02562 * 20 9 8 23 23 H 1.09002 * 109.47072 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47002 * 300.00083 * 1 2 3 25 25 H 1.09001 * 109.47100 * 60.00207 * 1 2 3 26 26 H 0.97005 * 119.99678 * 180.02562 * 2 1 3 27 27 H 1.07998 * 119.94955 * 0.02562 * 7 6 3 28 28 H 1.07997 * 120.02383 * 180.02562 * 8 7 6 29 29 H 0.96994 * 119.99768 * 179.72011 * 10 9 8 30 30 H 1.09007 * 109.47281 * 299.99782 * 11 10 9 31 31 H 1.09005 * 109.47205 * 59.99743 * 11 10 9 32 32 H 0.96997 * 119.99661 * 179.97438 * 15 14 12 33 33 H 1.08004 * 119.97463 * 179.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7120 2.2329 -1.0216 5 8 3.6738 1.1002 0.0347 6 6 1.9379 2.2414 1.5253 7 6 0.8580 3.1002 1.6160 8 6 0.5761 3.7357 2.8099 9 6 1.3779 3.5112 3.9207 10 7 1.0915 4.1482 5.1323 11 6 -0.0523 5.0584 5.2287 12 6 -0.1405 5.6077 6.6292 13 1 0.5829 5.3084 7.3732 14 6 -1.1447 6.4925 6.9608 15 7 -1.2219 6.9715 8.1832 16 14 -2.3953 7.0108 5.6738 17 1 -3.5494 6.0767 5.7006 18 1 -2.8664 8.3881 5.9678 19 1 -1.7646 6.9798 4.3298 20 6 2.4634 2.6466 3.8273 21 9 3.2462 2.4245 4.9057 22 6 2.7400 2.0149 2.6288 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.9500 -0.8401 -0.0004 27 1 0.2337 3.2745 0.7521 28 1 -0.2679 4.4059 2.8792 29 1 1.6501 3.9873 5.9087 30 1 0.0763 5.8796 4.5234 31 1 -0.9685 4.5170 4.9927 32 1 -1.9281 7.5942 8.4163 33 1 3.5828 1.3436 2.5545 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362668338.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:16 Heat of formation + Delta-G solvation = -94.418384 kcal Electronic energy + Delta-G solvation = -20387.848167 eV Core-core repulsion = 16875.945515 eV Total energy + Delta-G solvation = -3511.902651 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.073 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.60374 -39.10999 -37.23767 -35.87577 -35.64816 -35.12502 -32.83178 -30.56005 -30.02572 -27.24650 -26.17376 -23.55226 -22.56210 -21.32735 -19.63655 -18.43167 -17.91646 -17.44679 -16.71096 -16.27736 -16.07977 -15.68454 -15.46583 -14.86086 -14.67863 -14.03894 -13.95466 -13.65415 -13.53340 -13.31822 -13.01970 -12.70060 -12.57828 -12.31645 -12.11620 -12.04081 -11.76072 -11.51765 -11.16574 -11.08736 -10.71589 -10.24392 -10.10428 -9.79319 -9.70468 -8.89580 -8.85091 -7.33172 -6.38713 -4.43576 0.41848 1.07512 1.29637 2.97975 3.08706 3.16314 3.17322 3.51805 3.75642 3.81331 4.13206 4.26622 4.50052 4.79957 4.83061 4.94522 5.02120 5.23941 5.34541 5.51082 5.56896 5.66975 5.77968 5.95285 6.16719 6.25729 6.31377 6.68307 6.72774 6.82364 7.10385 7.44692 7.99748 8.19744 8.60396 9.17516 10.73368 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.025505 B = 0.004123 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.558560 B = 6788.876643 C = 7478.690935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.124 6.124 3 S 2.707 3.293 4 O -0.963 6.963 5 O -0.967 6.967 6 C -0.736 4.736 7 C 0.022 3.978 8 C -0.205 4.205 9 C 0.256 3.744 10 N -0.695 5.695 11 C 0.216 3.784 12 C -0.550 4.550 13 H 0.081 0.919 14 C 0.079 3.921 15 N -0.886 5.886 16 Si 0.879 3.121 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.263 1.263 20 C -0.016 4.016 21 F -0.142 7.142 22 C -0.002 4.002 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.416 0.584 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.407 0.593 30 H 0.028 0.972 31 H 0.023 0.977 32 H 0.270 0.730 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.265 -13.208 -14.991 20.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.883 5.883 3 S 2.798 3.202 4 O -0.953 6.953 5 O -0.958 6.958 6 C -0.828 4.828 7 C 0.001 3.999 8 C -0.230 4.230 9 C 0.139 3.861 10 N -0.313 5.313 11 C 0.094 3.906 12 C -0.588 4.588 13 H 0.099 0.901 14 C -0.125 4.125 15 N -0.522 5.522 16 Si 0.705 3.295 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.041 4.041 21 F -0.121 7.121 22 C -0.023 4.023 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.250 0.750 27 H 0.157 0.843 28 H 0.158 0.842 29 H 0.243 0.757 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.375 -12.415 -15.379 19.907 hybrid contribution -0.524 0.035 0.912 1.052 sum 1.851 -12.380 -14.467 19.131 Atomic orbital electron populations 1.21484 0.78560 1.04039 1.02227 1.55374 1.16155 1.24475 1.92289 1.01343 0.72596 0.72447 0.73843 1.93564 1.78838 1.68398 1.54511 1.93567 1.31089 1.83587 1.87520 1.30032 1.10464 1.21457 1.20821 1.20605 0.92348 0.89899 0.97042 1.20698 1.03425 1.07077 0.91763 1.18399 0.90798 0.88454 0.88426 1.45611 1.32127 1.45101 1.08475 1.19747 0.83565 0.88118 0.99215 1.20978 1.15532 1.28122 0.94121 0.90141 1.24811 0.97198 0.95011 0.95517 1.69869 1.33221 1.30770 1.18360 0.86802 0.81849 0.78730 0.82105 1.19680 1.20581 1.18743 1.17082 0.95156 1.06426 0.85440 1.91449 1.73224 1.94069 1.53312 1.20413 0.96760 0.95569 0.89601 0.90163 0.91846 0.91414 0.75034 0.84253 0.84204 0.75731 0.95431 0.95915 0.91979 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 11.14 59.85 0.67 1.21 16 2 N -1.12 -8.95 6.19 -16.63 -0.10 -9.05 16 3 S 2.71 31.42 5.74 -107.50 -0.62 30.81 16 4 O -0.96 -13.51 17.00 -57.17 -0.97 -14.49 16 5 O -0.97 -13.61 17.27 -57.17 -0.99 -14.59 16 6 C -0.74 -9.56 5.95 -39.55 -0.24 -9.80 16 7 C 0.02 0.29 9.51 -39.60 -0.38 -0.09 16 8 C -0.21 -3.17 9.31 -39.39 -0.37 -3.53 16 9 C 0.26 4.39 6.66 -83.67 -0.56 3.83 16 10 N -0.70 -13.42 5.73 -59.73 -0.34 -13.76 16 11 C 0.22 4.68 3.74 -5.20 -0.02 4.66 16 12 C -0.55 -14.34 9.83 -34.44 -0.34 -14.68 16 13 H 0.08 2.27 7.84 -52.48 -0.41 1.85 16 14 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 15 N -0.89 -25.36 13.96 55.43 0.77 -24.58 16 16 Si 0.88 19.54 27.47 -169.99 -4.67 14.87 16 17 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 20 C -0.02 -0.26 7.31 -39.26 -0.29 -0.55 16 21 F -0.14 -2.35 16.64 2.25 0.04 -2.31 16 22 C 0.00 -0.03 9.49 -39.55 -0.38 -0.41 16 23 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 26 H 0.42 2.43 8.96 -34.47 -0.31 2.12 16 27 H 0.14 1.51 7.61 -52.49 -0.40 1.11 16 28 H 0.14 2.11 6.74 -52.49 -0.35 1.75 16 29 H 0.41 7.79 7.81 -40.82 -0.32 7.47 16 30 H 0.03 0.61 7.01 -51.93 -0.36 0.24 16 31 H 0.02 0.49 7.37 -51.93 -0.38 0.10 16 32 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.14 1.74 7.61 -52.48 -0.40 1.34 16 LS Contribution 302.81 15.07 4.56 4.56 Total: -1.00 -31.89 302.81 -7.67 -39.57 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -3.37 Total: 6.29 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -1.99 Total: -17.31 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.33 Total: -47.40 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -1.96 Total: -29.08 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.67 Total: 14.87 kcal Atomic # 16 Polarization: 31.42 SS G_CDS: -0.62 Total: 30.81 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.89 -7.67 -39.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362668338.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.849 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds