Wall clock time and date at job start Tue Mar 31 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 119.99913 * 2 1 4 4 H 1.48498 * 109.47296 * 269.99818 * 3 2 1 5 5 H 1.48502 * 109.47052 * 29.99908 * 3 2 1 6 6 H 1.48497 * 109.47459 * 149.99698 * 3 2 1 7 7 C 1.39946 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00017 * 197.85718 * 7 2 1 9 9 C 1.41396 * 119.99976 * 17.86133 * 7 2 1 10 10 C 1.40716 * 120.24457 * 24.38444 * 9 7 2 11 11 C 1.37617 * 119.74795 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.24618 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.74963 * 179.97438 * 12 11 10 14 14 S 1.81401 * 109.47314 * 90.00120 * 13 12 11 15 15 C 1.76204 * 102.99797 * 180.02562 * 14 13 12 16 16 C 1.38892 * 120.08842 * 359.97438 * 15 14 13 17 17 C 1.38129 * 119.94490 * 180.02562 * 16 15 14 18 18 C 1.38290 * 120.11639 * 359.97438 * 17 16 15 19 19 C 1.38304 * 120.17094 * 0.02562 * 18 17 16 20 20 C 1.38261 * 120.05742 * 359.97132 * 19 18 17 21 21 F 1.35102 * 120.06125 * 180.02562 * 20 19 18 22 22 C 1.38641 * 120.49962 * 0.25204 * 12 11 10 23 23 C 1.37620 * 120.24601 * 359.44492 * 22 12 11 24 24 H 0.97001 * 120.00118 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.12864 * 0.02562 * 10 9 7 26 26 H 1.08000 * 119.87819 * 180.02562 * 11 10 9 27 27 H 1.09005 * 109.47159 * 330.00091 * 13 12 11 28 28 H 1.09000 * 109.47096 * 210.00470 * 13 12 11 29 29 H 1.07999 * 120.02712 * 0.27822 * 16 15 14 30 30 H 1.07995 * 119.94196 * 179.97438 * 17 16 15 31 31 H 1.07995 * 119.91553 * 179.97438 * 18 17 16 32 32 H 1.08002 * 119.97258 * 180.02562 * 19 18 17 33 33 H 1.07999 * 119.87007 * 179.70505 * 22 12 11 34 34 H 1.07998 * 120.12263 * 180.26883 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4396 2.6526 0.7000 6 1 3.5398 1.4403 0.7001 7 6 2.0080 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2873 9 6 1.3522 -2.4072 -0.3745 10 6 0.2210 -2.3627 -1.2103 11 6 -0.4098 -3.5321 -1.5685 12 6 0.0650 -4.7508 -1.1087 13 6 -0.6347 -6.0245 -1.5075 14 16 0.0950 -6.6605 -3.0417 15 6 -0.8358 -8.1254 -3.3458 16 6 -1.8459 -8.5028 -2.4704 17 6 -2.5734 -9.6520 -2.7113 18 6 -2.2981 -10.4272 -3.8229 19 6 -1.2933 -10.0559 -4.6977 20 6 -0.5608 -8.9069 -4.4635 21 9 0.4204 -8.5439 -5.3183 22 6 1.1752 -4.8061 -0.2802 23 6 1.8254 -3.6497 0.0858 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1509 -1.4143 -1.5693 26 1 -1.2779 -3.5005 -2.2102 27 1 -1.6942 -5.8229 -1.6654 28 1 -0.5198 -6.7653 -0.7162 29 1 -2.0651 -7.8960 -1.6042 30 1 -3.3585 -9.9456 -2.0304 31 1 -2.8686 -11.3253 -4.0079 32 1 -1.0813 -10.6635 -5.5651 33 1 1.5336 -5.7607 0.0759 34 1 2.6927 -3.6955 0.7278 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399148419.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:42 Heat of formation + Delta-G solvation = -13.041892 kcal Electronic energy + Delta-G solvation = -18545.877449 eV Core-core repulsion = 15448.352811 eV Total energy + Delta-G solvation = -3097.524639 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.81615 -38.80022 -37.73380 -34.12307 -31.69407 -31.06611 -30.44214 -29.41592 -27.66304 -24.21702 -23.18497 -22.52988 -21.12641 -20.17181 -18.01038 -17.42458 -16.91801 -16.34050 -15.60404 -15.44182 -15.15022 -14.60846 -14.09896 -14.06112 -14.01178 -13.52469 -13.18639 -12.72367 -12.61652 -12.20169 -12.18200 -12.06123 -11.71164 -11.38815 -11.17706 -10.98531 -10.74386 -10.48855 -9.95839 -9.83318 -9.74220 -9.50429 -9.22623 -8.93497 -7.59458 -7.42793 -7.17255 -6.90476 -4.47800 1.01072 1.08022 1.60146 2.56822 2.87348 2.97708 3.01607 3.04277 3.26399 3.44681 3.83405 4.20081 4.51206 4.63592 4.79162 5.10081 5.17797 5.41192 5.50266 5.54070 5.64297 5.90169 5.90917 6.02682 6.06885 6.21682 6.26364 6.27534 6.73143 6.84224 6.93834 7.13507 7.21933 7.48058 7.70148 7.92565 7.95548 8.15394 8.50240 8.74908 8.82852 10.03028 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.039996 B = 0.003048 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.894833 B = 9183.984392 C = 9378.328442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.453 4.453 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.167 4.167 11 C -0.077 4.077 12 C -0.219 4.219 13 C -0.025 4.025 14 S -0.112 6.112 15 C -0.117 4.117 16 C -0.113 4.113 17 C -0.110 4.110 18 C -0.111 4.111 19 C -0.137 4.137 20 C 0.104 3.896 21 F -0.131 7.131 22 C -0.064 4.064 23 C -0.227 4.227 24 H 0.283 0.717 25 H 0.120 0.880 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.134 0.866 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.090 0.910 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.103 -13.422 -4.578 15.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.482 4.482 8 H 0.099 0.901 9 C 0.115 3.885 10 C -0.187 4.187 11 C -0.097 4.097 12 C -0.223 4.223 13 C -0.171 4.171 14 S 0.140 5.860 15 C -0.231 4.231 16 C -0.137 4.137 17 C -0.130 4.130 18 C -0.133 4.133 19 C -0.158 4.158 20 C 0.078 3.922 21 F -0.110 7.110 22 C -0.085 4.085 23 C -0.247 4.247 24 H 0.094 0.906 25 H 0.138 0.862 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.152 0.848 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.153 0.847 33 H 0.108 0.892 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.335 -12.702 -5.217 14.399 hybrid contribution -0.592 0.219 0.586 0.862 sum -4.927 -12.483 -4.630 14.196 Atomic orbital electron populations 1.69820 1.07695 1.29602 1.33748 1.25983 0.94781 1.01597 0.92076 0.86259 0.80509 0.80215 0.79510 1.19087 1.20184 1.18468 1.19713 0.98293 0.91239 1.38943 0.90081 1.17693 0.90828 0.92092 0.87901 1.21300 0.99369 0.96759 1.01287 1.20527 0.98253 0.92441 0.98467 1.18308 1.02801 0.90948 1.10275 1.22354 1.00957 0.99227 0.94573 1.86465 1.45779 1.19711 1.34006 1.22329 1.01771 1.01322 0.97715 1.21144 0.95339 0.98023 0.99237 1.21109 0.99588 0.94633 0.97693 1.20943 0.97559 1.00163 0.94594 1.21039 0.97239 0.96008 1.01475 1.17161 0.90071 0.95594 0.89386 1.91513 1.59573 1.91453 1.68457 1.20380 0.94521 0.96703 0.96860 1.20951 1.03790 0.92752 1.07236 0.90579 0.86223 0.89208 0.90296 0.90363 0.84840 0.85322 0.85177 0.84694 0.89179 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.51 10.95 55.55 0.61 -18.91 16 2 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 18.02 29.59 -169.99 -5.03 12.99 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.45 -11.61 9.05 -37.74 -0.34 -11.95 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.12 3.06 5.57 -106.83 -0.60 2.47 16 10 C -0.17 -4.23 8.70 -38.87 -0.34 -4.57 16 11 C -0.08 -1.74 9.67 -39.66 -0.38 -2.13 16 12 C -0.22 -4.62 5.16 -104.33 -0.54 -5.15 16 13 C -0.02 -0.43 4.45 36.00 0.16 -0.27 16 14 S -0.11 -1.97 21.51 -107.50 -2.31 -4.28 16 15 C -0.12 -1.78 6.11 -39.01 -0.24 -2.01 16 16 C -0.11 -1.43 9.36 -39.38 -0.37 -1.80 16 17 C -0.11 -1.13 10.04 -39.60 -0.40 -1.52 16 18 C -0.11 -1.06 10.04 -39.54 -0.40 -1.46 16 19 C -0.14 -1.53 10.02 -39.55 -0.40 -1.93 16 20 C 0.10 1.50 7.28 -39.24 -0.29 1.21 16 21 F -0.13 -2.08 16.76 2.25 0.04 -2.04 16 22 C -0.06 -1.40 9.67 -39.66 -0.38 -1.79 16 23 C -0.23 -5.43 9.80 -38.88 -0.38 -5.81 16 24 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 25 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 26 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.08 1.25 7.68 -51.92 -0.40 0.85 16 28 H 0.08 1.22 7.69 -51.92 -0.40 0.82 16 29 H 0.13 1.58 5.88 -52.49 -0.31 1.27 16 30 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 312.16 15.07 4.70 4.70 Total: -1.00 -26.96 312.16 -10.48 -37.44 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -3.52 Total: 5.07 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: -4.97 Total: -34.98 kcal Atomic # 7 Polarization: -19.51 SS G_CDS: 0.61 Total: -18.91 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Atomic # 16 Polarization: -1.97 SS G_CDS: -2.31 Total: -4.28 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.96 -10.48 -37.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399148419.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.397 kcal (2) G-P(sol) polarization free energy of solvation -26.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds