Wall clock time and date at job start Tue Mar 31 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 119.99913 * 2 1 4 4 H 1.48498 * 109.47296 * 269.99818 * 3 2 1 5 5 H 1.48502 * 109.47052 * 29.99908 * 3 2 1 6 6 H 1.48497 * 109.47459 * 149.99698 * 3 2 1 7 7 C 1.39946 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00017 * 197.85718 * 7 2 1 9 9 C 1.41396 * 119.99976 * 17.86133 * 7 2 1 10 10 C 1.40716 * 120.24457 * 24.38444 * 9 7 2 11 11 C 1.37617 * 119.74795 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.24618 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.74963 * 179.97438 * 12 11 10 14 14 S 1.81401 * 109.47314 * 90.00120 * 13 12 11 15 15 C 1.76204 * 102.99797 * 180.02562 * 14 13 12 16 16 C 1.38892 * 120.08842 * 359.97438 * 15 14 13 17 17 C 1.38129 * 119.94490 * 180.02562 * 16 15 14 18 18 C 1.38290 * 120.11639 * 359.97438 * 17 16 15 19 19 C 1.38304 * 120.17094 * 0.02562 * 18 17 16 20 20 C 1.38261 * 120.05742 * 359.97132 * 19 18 17 21 21 F 1.35102 * 120.06125 * 180.02562 * 20 19 18 22 22 C 1.38641 * 120.49962 * 0.25204 * 12 11 10 23 23 C 1.37620 * 120.24601 * 359.44492 * 22 12 11 24 24 H 0.97001 * 120.00118 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.12864 * 0.02562 * 10 9 7 26 26 H 1.08000 * 119.87819 * 180.02562 * 11 10 9 27 27 H 1.09005 * 109.47159 * 330.00091 * 13 12 11 28 28 H 1.09000 * 109.47096 * 210.00470 * 13 12 11 29 29 H 1.07999 * 120.02712 * 0.27822 * 16 15 14 30 30 H 1.07995 * 119.94196 * 179.97438 * 17 16 15 31 31 H 1.07995 * 119.91553 * 179.97438 * 18 17 16 32 32 H 1.08002 * 119.97258 * 180.02562 * 19 18 17 33 33 H 1.07999 * 119.87007 * 179.70505 * 22 12 11 34 34 H 1.07998 * 120.12263 * 180.26883 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4396 2.6526 0.7000 6 1 3.5398 1.4403 0.7001 7 6 2.0080 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2873 9 6 1.3522 -2.4072 -0.3745 10 6 0.2210 -2.3627 -1.2103 11 6 -0.4098 -3.5321 -1.5685 12 6 0.0650 -4.7508 -1.1087 13 6 -0.6347 -6.0245 -1.5075 14 16 0.0950 -6.6605 -3.0417 15 6 -0.8358 -8.1254 -3.3458 16 6 -1.8459 -8.5028 -2.4704 17 6 -2.5734 -9.6520 -2.7113 18 6 -2.2981 -10.4272 -3.8229 19 6 -1.2933 -10.0559 -4.6977 20 6 -0.5608 -8.9069 -4.4635 21 9 0.4204 -8.5439 -5.3183 22 6 1.1752 -4.8061 -0.2802 23 6 1.8254 -3.6497 0.0858 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1509 -1.4143 -1.5693 26 1 -1.2779 -3.5005 -2.2102 27 1 -1.6942 -5.8229 -1.6654 28 1 -0.5198 -6.7653 -0.7162 29 1 -2.0651 -7.8960 -1.6042 30 1 -3.3585 -9.9456 -2.0304 31 1 -2.8686 -11.3253 -4.0079 32 1 -1.0813 -10.6635 -5.5651 33 1 1.5336 -5.7607 0.0759 34 1 2.6927 -3.6955 0.7278 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399148419.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:41 Heat of formation + Delta-G solvation = -23.786359 kcal Electronic energy + Delta-G solvation = -18546.343364 eV Core-core repulsion = 15448.352811 eV Total energy + Delta-G solvation = -3097.990554 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.92497 -39.70629 -39.53088 -35.90558 -33.20501 -32.20387 -31.36314 -31.23968 -29.35030 -25.90778 -24.09727 -23.56369 -22.95559 -21.89224 -19.27536 -19.08073 -17.97931 -17.34737 -17.20800 -16.70607 -16.24123 -16.13542 -15.74528 -15.67254 -15.07209 -14.81671 -14.32940 -14.16554 -14.06009 -13.86133 -13.48690 -13.35934 -13.08283 -12.84122 -12.75761 -12.51292 -12.20640 -12.01664 -11.57659 -11.33791 -11.22877 -10.98941 -10.80203 -9.85815 -9.42786 -9.25458 -8.69805 -8.44949 -6.38174 0.07399 0.18043 0.22944 1.04371 1.11841 1.37392 1.43773 1.50695 1.68805 2.18416 2.56664 2.71192 3.23962 3.70095 3.76389 4.01729 4.03247 4.04852 4.29778 4.34817 4.47097 4.53345 4.58407 4.67907 4.99196 5.00774 5.05937 5.10769 5.24913 5.29552 5.38598 5.41332 5.64295 5.87277 5.87842 6.04953 6.12364 6.31570 6.63678 6.87913 6.96382 8.26776 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.039996 B = 0.003048 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.894833 B = 9183.984392 C = 9378.328442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.036 3.964 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.494 4.494 8 H 0.078 0.922 9 C 0.087 3.913 10 C -0.192 4.192 11 C -0.083 4.083 12 C -0.208 4.208 13 C -0.012 4.012 14 S -0.162 6.162 15 C -0.136 4.136 16 C -0.121 4.121 17 C -0.104 4.104 18 C -0.094 4.094 19 C -0.135 4.135 20 C 0.075 3.925 21 F -0.149 7.149 22 C -0.068 4.068 23 C -0.244 4.244 24 H 0.290 0.710 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.140 0.860 30 H 0.164 0.836 31 H 0.172 0.828 32 H 0.159 0.841 33 H 0.118 0.882 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.730 -16.101 -4.774 18.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.523 4.523 8 H 0.096 0.904 9 C 0.084 3.916 10 C -0.211 4.211 11 C -0.103 4.103 12 C -0.211 4.211 13 C -0.159 4.159 14 S 0.087 5.913 15 C -0.249 4.249 16 C -0.145 4.145 17 C -0.123 4.123 18 C -0.115 4.115 19 C -0.155 4.155 20 C 0.050 3.950 21 F -0.128 7.128 22 C -0.088 4.088 23 C -0.264 4.264 24 H 0.101 0.899 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.157 0.843 30 H 0.182 0.818 31 H 0.190 0.810 32 H 0.177 0.823 33 H 0.136 0.864 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.974 -15.398 -5.399 17.377 hybrid contribution -0.253 0.678 0.551 0.910 sum -6.227 -14.720 -4.848 16.702 Atomic orbital electron populations 1.69864 1.09022 1.30830 1.34563 1.26795 0.95527 1.04611 0.91105 0.85182 0.79135 0.75769 0.79537 1.18787 1.18994 1.18131 1.19922 0.98489 0.92512 1.41348 0.90420 1.18023 0.91657 0.93165 0.88801 1.21265 1.00309 0.97055 1.02500 1.20762 0.98612 0.92423 0.98472 1.18663 1.01920 0.92141 1.08397 1.22223 1.01091 0.97634 0.94908 1.86472 1.47591 1.22859 1.34357 1.22218 1.03040 1.00308 0.99372 1.21376 0.94945 0.99171 0.98964 1.21564 0.99352 0.93185 0.98216 1.21491 0.96186 1.00751 0.93066 1.21419 0.96766 0.94787 1.02569 1.17608 0.90838 0.97090 0.89489 1.91465 1.60492 1.91816 1.68996 1.20695 0.94376 0.97157 0.96549 1.21159 1.04441 0.93043 1.07722 0.89881 0.87945 0.87592 0.88789 0.88285 0.84255 0.81828 0.81023 0.82296 0.86429 0.88155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.27 10.95 21.83 0.24 -42.03 16 2 C 0.04 1.78 5.14 85.26 0.44 2.22 16 3 Si 0.98 37.87 29.59 68.60 2.03 39.90 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 6 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 7 C -0.49 -26.58 9.05 23.46 0.21 -26.37 16 8 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 9 C 0.09 4.69 5.57 -21.29 -0.12 4.58 16 10 C -0.19 -10.12 8.70 22.73 0.20 -9.92 16 11 C -0.08 -3.82 9.67 22.22 0.21 -3.61 16 12 C -0.21 -8.69 5.16 -19.67 -0.10 -8.79 16 13 C -0.01 -0.40 4.45 71.23 0.32 -0.08 16 14 S -0.16 -5.64 21.51 -56.49 -1.22 -6.86 16 15 C -0.14 -3.91 6.11 22.64 0.14 -3.77 16 16 C -0.12 -2.70 9.36 22.40 0.21 -2.49 16 17 C -0.10 -1.61 10.04 22.26 0.22 -1.39 16 18 C -0.09 -1.31 10.04 22.30 0.22 -1.09 16 19 C -0.14 -2.55 10.02 22.29 0.22 -2.33 16 20 C 0.08 2.06 7.28 22.49 0.16 2.22 16 21 F -0.15 -4.70 16.76 44.97 0.75 -3.95 16 22 C -0.07 -2.95 9.67 22.22 0.21 -2.73 16 23 C -0.24 -11.98 9.80 22.73 0.22 -11.76 16 24 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 25 H 0.10 5.66 6.16 -2.91 -0.02 5.64 16 26 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 27 H 0.09 2.79 7.68 -2.39 -0.02 2.78 16 28 H 0.10 2.84 7.69 -2.39 -0.02 2.82 16 29 H 0.14 2.87 5.88 -2.91 -0.02 2.85 16 30 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 31 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 33 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 34 H 0.10 4.66 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -62.25 312.16 5.70 -56.54 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 1.12 Total: 21.69 kcal Atomic # 6 Polarization: -68.08 SS G_CDS: 2.78 Total: -65.30 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.24 Total: -42.03 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.75 Total: -3.95 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Atomic # 16 Polarization: -5.64 SS G_CDS: -1.22 Total: -6.86 kcal Total: -62.25 5.70 -56.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399148419.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.756 kcal (2) G-P(sol) polarization free energy of solvation -62.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds