Wall clock time and date at job start Tue Mar 31 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81398 * 109.47112 * 2 1 4 4 C 1.81407 * 102.99938 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.46978 * 304.99749 * 4 3 2 6 6 C 1.53001 * 109.46803 * 64.99839 * 4 3 2 7 7 C 1.50696 * 109.47230 * 184.99550 * 4 3 2 8 8 N 1.29948 * 126.29328 * 314.98167 * 7 4 3 9 9 O 1.21292 * 110.25465 * 179.97438 * 8 7 4 10 10 C 1.33638 * 109.81297 * 0.02562 * 9 8 7 11 11 C 1.50703 * 126.55239 * 179.97438 * 10 9 8 12 12 S 1.81399 * 109.47147 * 270.02259 * 11 10 9 13 13 C 1.81394 * 102.99894 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46854 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00482 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99886 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99878 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99954 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46902 * 60.00102 * 18 16 14 20 20 H 1.48502 * 109.46926 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47281 * 300.00149 * 18 16 14 22 22 N 1.31126 * 106.89474 * 0.22019 * 10 9 8 23 23 H 1.08999 * 109.47193 * 180.02562 * 1 2 3 24 24 H 1.09012 * 109.47087 * 300.00141 * 1 2 3 25 25 H 1.08994 * 109.47352 * 59.99712 * 1 2 3 26 26 H 1.08995 * 109.47341 * 239.99679 * 2 1 3 27 27 H 1.09004 * 109.47109 * 119.99558 * 2 1 3 28 28 H 1.09006 * 109.47077 * 60.00408 * 6 4 3 29 29 H 1.08997 * 109.46839 * 179.97438 * 6 4 3 30 30 H 1.08997 * 109.47283 * 300.00146 * 6 4 3 31 31 H 1.09001 * 109.46980 * 150.02247 * 11 10 9 32 32 H 1.09004 * 109.47113 * 30.02228 * 11 10 9 33 33 H 1.09002 * 109.47501 * 299.99574 * 13 12 11 34 34 H 1.08998 * 109.47135 * 60.00434 * 13 12 11 35 35 H 0.96999 * 119.99860 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 1 4.2313 0.8793 0.8428 6 6 4.3756 0.8423 -1.3063 7 6 4.5958 2.8555 0.1246 8 7 4.2736 3.9314 -0.5291 9 8 4.9934 4.8518 -0.2036 10 6 5.8701 4.4379 0.7162 11 6 6.9367 5.2713 1.3787 12 16 8.4647 5.1831 0.4050 13 6 9.6086 6.2310 1.3451 14 6 10.9470 6.2603 0.6531 15 1 11.0946 5.7045 -0.2611 16 6 11.9829 6.9976 1.1864 17 7 11.8031 7.6749 2.2993 18 14 13.6421 7.0333 0.3290 19 1 13.4795 7.5821 -1.0412 20 1 14.5786 7.8913 1.0986 21 1 14.1875 5.6544 0.2485 22 7 5.6283 3.1667 0.9282 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 4.0814 1.4689 -2.1484 29 1 5.4587 0.7199 -1.3060 30 1 3.8992 -0.1339 -1.3959 31 1 7.1234 4.8911 2.3830 32 1 6.6033 6.3074 1.4385 33 1 9.2082 7.2431 1.4054 34 1 9.7286 5.8272 2.3504 35 1 12.5319 8.1932 2.6747 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413008863.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:37 Heat of formation + Delta-G solvation = 51.775209 kcal Electronic energy + Delta-G solvation = -17341.655030 eV Core-core repulsion = 14402.304985 eV Total energy + Delta-G solvation = -2939.350045 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.58475 -36.45940 -34.41513 -33.26349 -33.23377 -32.05922 -28.97487 -28.50300 -25.40104 -24.06831 -23.53860 -23.01892 -21.22606 -18.16554 -17.66637 -16.73674 -16.54404 -15.67814 -15.33607 -15.17913 -15.03345 -14.67585 -14.53628 -13.89608 -13.55532 -12.99743 -12.90698 -12.75794 -12.53407 -12.41762 -12.19827 -12.01023 -11.74052 -11.64830 -11.43896 -11.05720 -10.89997 -10.85572 -10.42526 -10.17057 -9.80424 -9.58757 -9.07368 -8.68146 -8.02485 -6.91721 -6.27026 -4.32108 0.89697 1.12978 1.98632 2.19090 2.60440 2.84709 3.24917 3.28319 3.31976 3.35641 3.61996 3.98880 4.29899 4.48232 4.53568 4.54819 4.57522 4.95092 5.01265 5.10586 5.15865 5.22436 5.30935 5.37382 5.43265 5.47862 5.66891 5.70724 5.76357 5.95511 6.96260 6.97537 7.66703 7.89658 8.14837 8.68993 9.31575 10.83980 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.052880 B = 0.002594 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.377484 B =10791.220573 C =11013.791142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 S -0.223 6.223 4 C 0.033 3.967 5 H 0.117 0.883 6 C -0.145 4.145 7 C 0.180 3.820 8 N -0.365 5.365 9 O 0.089 5.911 10 C 0.220 3.780 11 C -0.016 4.016 12 S -0.264 6.264 13 C 0.091 3.909 14 C -0.516 4.516 15 H 0.068 0.932 16 C 0.068 3.932 17 N -0.891 5.891 18 Si 0.909 3.091 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.273 1.273 22 N -0.467 5.467 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.755 -12.992 -2.674 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.245 4.245 3 S 0.003 5.997 4 C -0.097 4.097 5 H 0.135 0.865 6 C -0.205 4.205 7 C -0.094 4.094 8 N -0.071 5.071 9 O 0.027 5.973 10 C 0.000 4.000 11 C -0.165 4.165 12 S -0.040 6.040 13 C -0.056 4.056 14 C -0.556 4.556 15 H 0.086 0.914 16 C -0.137 4.137 17 N -0.528 5.528 18 Si 0.735 3.265 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.199 1.199 22 N -0.202 5.202 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.705 -12.878 -3.849 23.853 hybrid contribution 1.582 -0.218 0.888 1.828 sum -18.123 -13.096 -2.961 22.555 Atomic orbital electron populations 1.21497 0.91953 1.02648 1.03364 1.23417 1.00400 0.95433 1.05211 1.87296 1.02203 1.12204 1.97972 1.21168 0.93770 0.91029 1.03733 0.86491 1.22107 1.02784 1.00687 0.94892 1.24659 0.94399 0.96313 0.94032 1.74650 1.14437 0.97150 1.20875 1.85334 1.34025 1.33531 1.44381 1.27884 0.92795 0.89902 0.89460 1.21713 0.92744 1.00602 1.01434 1.87118 1.06030 1.70363 1.40442 1.21195 0.93678 0.94421 0.96298 1.20568 0.93783 1.31000 1.10210 0.91415 1.24946 0.99122 0.94649 0.94958 1.69930 1.33270 1.30220 1.19426 0.86376 0.82228 0.78334 0.79526 1.19832 1.20997 1.19858 1.71886 1.14137 1.10609 1.23561 0.90898 0.91619 0.91550 0.89723 0.89859 0.90642 0.90739 0.91045 0.86031 0.86712 0.93953 0.93982 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.92 37.16 0.37 -0.44 16 2 C -0.10 -0.68 6.36 37.16 0.24 -0.44 16 3 S -0.22 -2.47 20.99 -107.50 -2.26 -4.72 16 4 C 0.03 0.38 3.32 -27.88 -0.09 0.29 16 5 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 6 C -0.14 -1.41 9.08 37.16 0.34 -1.07 16 7 C 0.18 2.72 6.84 -156.37 -1.07 1.65 16 8 N -0.36 -5.93 11.96 30.89 0.37 -5.56 16 9 O 0.09 1.45 11.31 18.11 0.20 1.65 16 10 C 0.22 3.55 7.77 -13.06 -0.10 3.45 16 11 C -0.02 -0.25 6.57 36.01 0.24 -0.02 16 12 S -0.26 -5.43 21.64 -107.50 -2.33 -7.76 16 13 C 0.09 2.20 5.70 36.01 0.21 2.41 16 14 C -0.52 -13.95 9.13 -34.44 -0.31 -14.26 16 15 H 0.07 1.84 7.71 -52.49 -0.40 1.43 16 16 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 17 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 18 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 N -0.47 -7.68 11.55 -9.87 -0.11 -7.80 16 23 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.51 7.14 -51.93 -0.37 0.14 16 27 H 0.08 0.52 8.14 -51.92 -0.42 0.09 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.51 6.92 -51.93 -0.36 0.15 16 31 H 0.12 1.76 8.14 -51.92 -0.42 1.34 16 32 H 0.11 1.55 8.14 -51.92 -0.42 1.13 16 33 H 0.04 1.05 8.14 -51.92 -0.42 0.62 16 34 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 331.37 15.07 4.99 4.99 Total: -1.00 -29.59 331.37 -8.62 -38.21 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -4.92 Total: -3.89 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -0.29 Total: -6.70 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.99 Total: -37.55 kcal Atomic # 8 Polarization: 1.45 SS G_CDS: 0.20 Total: 1.65 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -4.58 Total: -12.48 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.59 -8.62 -38.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413008863.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.986 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds