Wall clock time and date at job start Tue Mar 31 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81398 * 109.47112 * 2 1 4 4 C 1.81407 * 102.99938 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.46978 * 304.99749 * 4 3 2 6 6 C 1.53001 * 109.46803 * 64.99839 * 4 3 2 7 7 C 1.50696 * 109.47230 * 184.99550 * 4 3 2 8 8 N 1.29948 * 126.29328 * 314.98167 * 7 4 3 9 9 O 1.21292 * 110.25465 * 179.97438 * 8 7 4 10 10 C 1.33638 * 109.81297 * 0.02562 * 9 8 7 11 11 C 1.50703 * 126.55239 * 179.97438 * 10 9 8 12 12 S 1.81399 * 109.47147 * 270.02259 * 11 10 9 13 13 C 1.81394 * 102.99894 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46854 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00482 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99886 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99878 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99954 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46902 * 60.00102 * 18 16 14 20 20 H 1.48502 * 109.46926 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47281 * 300.00149 * 18 16 14 22 22 N 1.31126 * 106.89474 * 0.22019 * 10 9 8 23 23 H 1.08999 * 109.47193 * 180.02562 * 1 2 3 24 24 H 1.09012 * 109.47087 * 300.00141 * 1 2 3 25 25 H 1.08994 * 109.47352 * 59.99712 * 1 2 3 26 26 H 1.08995 * 109.47341 * 239.99679 * 2 1 3 27 27 H 1.09004 * 109.47109 * 119.99558 * 2 1 3 28 28 H 1.09006 * 109.47077 * 60.00408 * 6 4 3 29 29 H 1.08997 * 109.46839 * 179.97438 * 6 4 3 30 30 H 1.08997 * 109.47283 * 300.00146 * 6 4 3 31 31 H 1.09001 * 109.46980 * 150.02247 * 11 10 9 32 32 H 1.09004 * 109.47113 * 30.02228 * 11 10 9 33 33 H 1.09002 * 109.47501 * 299.99574 * 13 12 11 34 34 H 1.08998 * 109.47135 * 60.00434 * 13 12 11 35 35 H 0.96999 * 119.99860 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 1 4.2313 0.8793 0.8428 6 6 4.3756 0.8423 -1.3063 7 6 4.5958 2.8555 0.1246 8 7 4.2736 3.9314 -0.5291 9 8 4.9934 4.8518 -0.2036 10 6 5.8701 4.4379 0.7162 11 6 6.9367 5.2713 1.3787 12 16 8.4647 5.1831 0.4050 13 6 9.6086 6.2310 1.3451 14 6 10.9470 6.2603 0.6531 15 1 11.0946 5.7045 -0.2611 16 6 11.9829 6.9976 1.1864 17 7 11.8031 7.6749 2.2993 18 14 13.6421 7.0333 0.3290 19 1 13.4795 7.5821 -1.0412 20 1 14.5786 7.8913 1.0986 21 1 14.1875 5.6544 0.2485 22 7 5.6283 3.1667 0.9282 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 4.0814 1.4689 -2.1484 29 1 5.4587 0.7199 -1.3060 30 1 3.8992 -0.1339 -1.3959 31 1 7.1234 4.8911 2.3830 32 1 6.6033 6.3074 1.4385 33 1 9.2082 7.2431 1.4054 34 1 9.7286 5.8272 2.3504 35 1 12.5319 8.1932 2.6747 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413008863.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:37 Heat of formation + Delta-G solvation = 34.463992 kcal Electronic energy + Delta-G solvation = -17342.405701 eV Core-core repulsion = 14402.304985 eV Total energy + Delta-G solvation = -2940.100716 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.82944 -37.61961 -35.56619 -35.27619 -33.83403 -33.06585 -30.72913 -30.05630 -26.39506 -25.31356 -24.71707 -24.33861 -22.35568 -19.42719 -18.98097 -18.51508 -17.59981 -17.23056 -16.42423 -16.25455 -16.10976 -15.80304 -15.56469 -15.13563 -14.69880 -14.56259 -14.33761 -14.09891 -13.67967 -13.45129 -13.30115 -12.98112 -12.88193 -12.70686 -12.60361 -12.38653 -12.26087 -12.23015 -12.05834 -11.65764 -11.11607 -10.92925 -10.74702 -10.72165 -8.85493 -8.59419 -8.32101 -6.44441 -0.36274 0.18369 0.77858 1.28890 1.42834 1.43469 1.45171 1.53843 1.56075 1.86542 2.29282 2.38542 2.81197 3.03558 3.52071 3.69479 3.89066 4.01533 4.04840 4.06851 4.24775 4.41444 4.49607 4.55841 4.63234 4.72734 4.85846 4.89721 4.97325 4.98322 5.00869 5.22684 5.58148 5.88732 6.61666 6.90716 7.23324 8.79128 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.052880 B = 0.002594 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.377484 B =10791.220573 C =11013.791142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 S -0.274 6.274 4 C 0.035 3.965 5 H 0.129 0.871 6 C -0.139 4.139 7 C 0.182 3.818 8 N -0.379 5.379 9 O 0.081 5.919 10 C 0.217 3.783 11 C -0.001 4.001 12 S -0.279 6.279 13 C 0.095 3.905 14 C -0.539 4.539 15 H 0.061 0.939 16 C 0.019 3.981 17 N -0.920 5.920 18 Si 0.972 3.028 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.268 1.268 22 N -0.479 5.479 23 H 0.097 0.903 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.030 0.970 34 H 0.028 0.972 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.355 -14.559 -3.036 24.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.229 4.229 3 S -0.048 6.048 4 C -0.095 4.095 5 H 0.146 0.854 6 C -0.199 4.199 7 C -0.092 4.092 8 N -0.087 5.087 9 O 0.022 5.978 10 C -0.004 4.004 11 C -0.150 4.150 12 S -0.054 6.054 13 C -0.052 4.052 14 C -0.578 4.578 15 H 0.079 0.921 16 C -0.182 4.182 17 N -0.559 5.559 18 Si 0.796 3.204 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.193 1.193 22 N -0.214 5.214 23 H 0.115 0.885 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.305 -14.436 -4.218 25.268 hybrid contribution 1.594 0.178 1.014 1.897 sum -18.711 -14.259 -3.204 23.742 Atomic orbital electron populations 1.21531 0.91163 1.03943 1.02761 1.23539 1.00780 0.91999 1.06614 1.87490 1.02291 1.16936 1.98132 1.21341 0.93726 0.89311 1.05092 0.85350 1.22090 1.02636 1.01784 0.93346 1.25316 0.93694 0.97370 0.92833 1.74650 1.14880 0.97563 1.21576 1.85322 1.34182 1.33804 1.44446 1.27860 0.92943 0.89999 0.89599 1.21721 0.89933 1.02405 1.00930 1.86968 1.08114 1.69298 1.41048 1.20871 0.94028 0.94456 0.95849 1.20899 0.95428 1.31161 1.10280 0.92104 1.25808 1.02721 0.94129 0.95558 1.70020 1.34459 1.30793 1.20597 0.85388 0.77892 0.78557 0.78589 1.19267 1.20182 1.19320 1.71900 1.14718 1.10726 1.24095 0.88460 0.92313 0.92133 0.88128 0.88564 0.91864 0.91261 0.87980 0.84463 0.84207 0.95136 0.95387 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.92 71.98 0.71 -0.59 16 2 C -0.08 -0.93 6.36 71.98 0.46 -0.47 16 3 S -0.27 -5.74 20.99 -56.49 -1.19 -6.93 16 4 C 0.04 0.77 3.32 29.85 0.10 0.87 16 5 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 6 C -0.14 -2.47 9.08 71.98 0.65 -1.81 16 7 C 0.18 5.36 6.84 138.46 0.95 6.31 16 8 N -0.38 -12.19 11.96 -60.34 -0.72 -12.91 16 9 O 0.08 2.63 11.31 74.89 0.85 3.48 16 10 C 0.22 6.82 7.77 88.38 0.69 7.51 16 11 C 0.00 -0.04 6.57 71.24 0.47 0.43 16 12 S -0.28 -11.45 21.64 -56.49 -1.22 -12.67 16 13 C 0.10 4.69 5.70 71.24 0.41 5.10 16 14 C -0.54 -29.43 9.13 25.60 0.23 -29.20 16 15 H 0.06 3.33 7.71 -2.91 -0.02 3.31 16 16 C 0.02 1.05 5.46 84.66 0.46 1.51 16 17 N -0.92 -51.85 13.29 21.45 0.28 -51.56 16 18 Si 0.97 42.42 29.54 68.60 2.03 44.45 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 20 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 22 N -0.48 -15.34 11.55 -303.22 -3.50 -18.84 16 23 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.10 0.86 7.14 -2.39 -0.02 0.84 16 27 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 30 H 0.10 1.16 6.92 -2.39 -0.02 1.14 16 31 H 0.14 3.79 8.14 -2.39 -0.02 3.77 16 32 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16 33 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.03 1.42 8.14 -2.39 -0.02 1.41 16 35 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -63.65 331.37 2.73 -60.92 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: 1.08 Total: 4.42 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 5.13 Total: -10.35 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -3.94 Total: -83.31 kcal Atomic # 8 Polarization: 2.63 SS G_CDS: 0.85 Total: 3.48 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: -17.19 SS G_CDS: -2.41 Total: -19.60 kcal Total: -63.65 2.73 -60.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413008863.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.379 kcal (2) G-P(sol) polarization free energy of solvation -63.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds