Wall clock time and date at job start Tue Mar 31 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47419 * 2 1 4 4 S 1.81406 * 109.46985 * 120.00045 * 2 1 3 5 5 C 1.81403 * 102.99731 * 294.99656 * 4 2 1 6 6 C 1.50704 * 109.47011 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99595 * 359.97438 * 6 5 4 8 8 C 1.37870 * 119.99720 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99647 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00526 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47225 * 90.00165 * 10 8 6 12 12 H 1.48498 * 109.47369 * 210.00090 * 10 8 6 13 13 H 1.48506 * 109.46868 * 330.00063 * 10 8 6 14 14 C 1.50707 * 109.46804 * 239.99678 * 2 1 3 15 15 C 1.38264 * 119.94209 * 120.00317 * 14 2 1 16 16 C 1.38145 * 120.05437 * 180.02562 * 15 14 2 17 17 C 1.38734 * 119.94237 * 0.25588 * 16 15 14 18 18 O 1.35904 * 120.05067 * 179.74240 * 17 16 15 19 19 C 1.42903 * 116.99686 * 180.02562 * 18 17 16 20 20 F 1.39902 * 109.46741 * 300.00002 * 19 18 17 21 21 F 1.39900 * 109.47365 * 59.99728 * 19 18 17 22 22 C 1.38735 * 119.88958 * 359.47324 * 17 16 15 23 23 C 1.38137 * 119.94094 * 0.54351 * 22 17 16 24 24 H 1.09007 * 109.47020 * 300.00013 * 1 2 3 25 25 H 1.08999 * 109.47263 * 60.00176 * 1 2 3 26 26 H 1.09004 * 109.47459 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47452 * 300.00339 * 5 4 2 28 28 H 1.08997 * 109.46767 * 60.00414 * 5 4 2 29 29 H 0.97005 * 120.00051 * 179.97438 * 9 8 6 30 30 H 1.07999 * 119.97244 * 359.97438 * 15 14 2 31 31 H 1.08002 * 120.02435 * 179.97438 * 16 15 14 32 32 H 1.08998 * 109.47132 * 180.02562 * 19 18 17 33 33 H 1.07992 * 120.02678 * 180.25528 * 22 17 16 34 34 H 1.08007 * 119.97477 * 179.72701 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 16 2.1346 -0.8552 1.4812 5 6 1.5664 0.2154 2.8309 6 6 1.9984 -0.3688 4.1512 7 1 2.5583 -1.2920 4.1759 8 6 1.6778 0.2747 5.3276 9 7 2.0544 -0.2354 6.4799 10 14 0.7087 1.8711 5.2850 11 1 -0.7442 1.5699 5.3440 12 1 1.0876 2.7115 6.4492 13 1 1.0123 2.6010 4.0279 14 6 2.0323 -0.7105 -1.2305 15 6 2.8271 -0.0375 -2.1399 16 6 3.2884 -0.6864 -3.2689 17 6 2.9490 -2.0129 -3.4924 18 8 3.3972 -2.6518 -4.6050 19 6 3.0079 -4.0168 -4.7703 20 9 3.4779 -4.7700 -3.6891 21 9 1.6125 -4.1004 -4.8253 22 6 2.1559 -2.6876 -2.5756 23 6 1.6970 -2.0341 -1.4484 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 2.0001 1.2085 2.7141 28 1 0.4792 0.2882 2.8037 29 1 1.8292 0.2176 7.3076 30 1 3.0869 0.9965 -1.9679 31 1 3.9089 -0.1601 -3.9791 32 1 3.4323 -4.4062 -5.6957 33 1 1.8938 -3.7214 -2.7453 34 1 1.0759 -2.5576 -0.7365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413011665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:54 Heat of formation + Delta-G solvation = -131.409570 kcal Electronic energy + Delta-G solvation = -19857.930587 eV Core-core repulsion = 16324.503916 eV Total energy + Delta-G solvation = -3533.426671 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.61369 -47.60538 -40.14063 -37.94475 -33.66143 -33.04066 -31.10152 -29.60281 -28.86617 -26.29092 -23.85199 -22.88515 -22.58368 -21.01330 -19.19782 -18.41873 -18.17431 -17.01424 -16.34491 -16.12692 -15.36656 -14.87871 -14.80142 -14.29695 -14.19731 -14.09569 -13.92527 -13.69579 -13.47305 -13.41435 -13.07704 -12.88450 -12.57923 -12.51169 -12.04637 -11.73808 -11.57614 -11.13410 -10.95466 -10.78394 -10.34662 -10.06457 -9.62746 -9.07208 -8.92155 -8.71986 -8.26209 -6.82335 -6.18455 -4.20462 1.16283 1.30458 2.31407 2.53134 3.19445 3.19980 3.27663 3.28171 3.63358 3.73440 3.99654 4.30019 4.35024 4.68466 4.74006 4.81936 5.09232 5.12702 5.28185 5.32738 5.45584 5.55605 5.79866 5.93378 6.01717 6.11592 6.22297 6.32371 6.45370 6.58700 6.63204 6.70182 6.97919 7.42830 8.30042 8.84668 9.37261 10.93713 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.034463 B = 0.003327 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.266356 B = 8414.568000 C = 8717.164706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.033 4.033 3 H 0.087 0.913 4 S -0.255 6.255 5 C 0.045 3.955 6 C -0.513 4.513 7 H 0.083 0.917 8 C 0.079 3.921 9 N -0.891 5.891 10 Si 0.877 3.123 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.266 1.266 14 C -0.072 4.072 15 C -0.077 4.077 16 C -0.134 4.134 17 C 0.095 3.905 18 O -0.323 6.323 19 C 0.411 3.589 20 F -0.197 7.197 21 F -0.200 7.200 22 C -0.187 4.187 23 C -0.062 4.062 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.268 0.732 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.179 0.821 33 H 0.132 0.868 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.196 -3.116 -24.635 24.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 H 0.105 0.895 4 S -0.025 6.025 5 C -0.103 4.103 6 C -0.552 4.552 7 H 0.101 0.899 8 C -0.125 4.125 9 N -0.529 5.529 10 Si 0.704 3.296 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.191 1.191 14 C -0.074 4.074 15 C -0.096 4.096 16 C -0.152 4.152 17 C 0.052 3.948 18 O -0.241 6.241 19 C 0.321 3.679 20 F -0.179 7.179 21 F -0.182 7.182 22 C -0.205 4.205 23 C -0.081 4.081 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.196 0.804 33 H 0.150 0.850 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.469 -3.974 -24.444 24.769 hybrid contribution -1.314 1.699 0.315 2.171 sum -0.845 -2.276 -24.128 24.250 Atomic orbital electron populations 1.22081 0.93030 1.03073 1.01880 1.21998 0.98491 1.01178 0.94422 0.89483 1.86942 1.75971 1.40118 0.99465 1.21450 0.98131 0.95859 0.94848 1.20483 1.37014 1.10803 0.86921 0.89872 1.24859 0.95313 0.97345 0.94979 1.69870 1.45878 1.39610 0.97559 0.86816 0.80765 0.83864 0.78150 1.19880 1.20802 1.19084 1.19394 0.98656 0.94350 0.94973 1.20866 0.96055 0.99970 0.92736 1.20321 1.03716 0.91670 0.99508 1.18839 0.96880 0.92800 0.86322 1.86581 1.71189 1.24286 1.42044 1.23316 0.75907 0.78660 0.90007 1.93118 1.88073 1.76702 1.60029 1.93100 1.32577 1.95687 1.96791 1.21475 1.01845 1.00915 0.96303 1.20903 0.97832 0.93675 0.95697 0.91844 0.92496 0.91413 0.94840 0.95082 0.92235 0.84950 0.84949 0.80428 0.85022 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.91 37.16 0.33 -1.71 16 2 C -0.03 -0.52 3.01 -27.88 -0.08 -0.61 16 3 H 0.09 1.33 7.87 -51.93 -0.41 0.92 16 4 S -0.25 -5.36 20.68 -107.50 -2.22 -7.58 16 5 C 0.04 1.08 4.46 36.01 0.16 1.24 16 6 C -0.51 -14.70 9.68 -34.44 -0.33 -15.04 16 7 H 0.08 2.63 7.96 -52.49 -0.42 2.21 16 8 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 9 N -0.89 -27.05 13.96 55.43 0.77 -26.28 16 10 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 14 C -0.07 -1.05 4.78 -104.60 -0.50 -1.55 16 15 C -0.08 -0.97 9.66 -39.61 -0.38 -1.35 16 16 C -0.13 -1.58 9.99 -39.43 -0.39 -1.98 16 17 C 0.09 1.19 6.48 -39.21 -0.25 0.94 16 18 O -0.32 -3.39 10.43 -19.44 -0.20 -3.59 16 19 C 0.41 3.20 5.98 101.05 0.60 3.81 16 20 F -0.20 -2.00 15.56 2.25 0.04 -1.96 16 21 F -0.20 -1.89 15.60 2.25 0.04 -1.85 16 22 C -0.19 -2.49 8.26 -39.43 -0.33 -2.82 16 23 C -0.06 -0.89 8.77 -39.61 -0.35 -1.24 16 24 H 0.06 0.97 6.92 -51.92 -0.36 0.61 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.96 7.38 -51.93 -0.38 0.58 16 27 H 0.03 0.80 7.20 -51.93 -0.37 0.42 16 28 H 0.03 0.72 6.57 -51.93 -0.34 0.38 16 29 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.13 1.40 7.94 -52.49 -0.42 0.99 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.18 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.13 1.65 5.10 -52.49 -0.27 1.38 16 34 H 0.14 1.95 7.57 -52.48 -0.40 1.55 16 LS Contribution 307.08 15.07 4.63 4.63 Total: -1.00 -32.02 307.08 -7.05 -39.07 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -3.80 Total: -0.58 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -1.62 Total: -18.13 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.77 Total: -26.28 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: -0.20 Total: -3.59 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.07 Total: -3.82 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -2.22 Total: -7.58 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.02 -7.05 -39.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413011665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.341 kcal (2) G-P(sol) polarization free energy of solvation -32.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds