Wall clock time and date at job start Tue Mar 31 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47419 * 2 1 4 4 S 1.81406 * 109.46985 * 120.00045 * 2 1 3 5 5 C 1.81403 * 102.99731 * 294.99656 * 4 2 1 6 6 C 1.50704 * 109.47011 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99595 * 359.97438 * 6 5 4 8 8 C 1.37870 * 119.99720 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99647 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00526 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47225 * 90.00165 * 10 8 6 12 12 H 1.48498 * 109.47369 * 210.00090 * 10 8 6 13 13 H 1.48506 * 109.46868 * 330.00063 * 10 8 6 14 14 C 1.50707 * 109.46804 * 239.99678 * 2 1 3 15 15 C 1.38264 * 119.94209 * 120.00317 * 14 2 1 16 16 C 1.38145 * 120.05437 * 180.02562 * 15 14 2 17 17 C 1.38734 * 119.94237 * 0.25588 * 16 15 14 18 18 O 1.35904 * 120.05067 * 179.74240 * 17 16 15 19 19 C 1.42903 * 116.99686 * 180.02562 * 18 17 16 20 20 F 1.39902 * 109.46741 * 300.00002 * 19 18 17 21 21 F 1.39900 * 109.47365 * 59.99728 * 19 18 17 22 22 C 1.38735 * 119.88958 * 359.47324 * 17 16 15 23 23 C 1.38137 * 119.94094 * 0.54351 * 22 17 16 24 24 H 1.09007 * 109.47020 * 300.00013 * 1 2 3 25 25 H 1.08999 * 109.47263 * 60.00176 * 1 2 3 26 26 H 1.09004 * 109.47459 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47452 * 300.00339 * 5 4 2 28 28 H 1.08997 * 109.46767 * 60.00414 * 5 4 2 29 29 H 0.97005 * 120.00051 * 179.97438 * 9 8 6 30 30 H 1.07999 * 119.97244 * 359.97438 * 15 14 2 31 31 H 1.08002 * 120.02435 * 179.97438 * 16 15 14 32 32 H 1.08998 * 109.47132 * 180.02562 * 19 18 17 33 33 H 1.07992 * 120.02678 * 180.25528 * 22 17 16 34 34 H 1.08007 * 119.97477 * 179.72701 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 16 2.1346 -0.8552 1.4812 5 6 1.5664 0.2154 2.8309 6 6 1.9984 -0.3688 4.1512 7 1 2.5583 -1.2920 4.1759 8 6 1.6778 0.2747 5.3276 9 7 2.0544 -0.2354 6.4799 10 14 0.7087 1.8711 5.2850 11 1 -0.7442 1.5699 5.3440 12 1 1.0876 2.7115 6.4492 13 1 1.0123 2.6010 4.0279 14 6 2.0323 -0.7105 -1.2305 15 6 2.8271 -0.0375 -2.1399 16 6 3.2884 -0.6864 -3.2689 17 6 2.9490 -2.0129 -3.4924 18 8 3.3972 -2.6518 -4.6050 19 6 3.0079 -4.0168 -4.7703 20 9 3.4779 -4.7700 -3.6891 21 9 1.6125 -4.1004 -4.8253 22 6 2.1559 -2.6876 -2.5756 23 6 1.6970 -2.0341 -1.4484 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 2.0001 1.2085 2.7141 28 1 0.4792 0.2882 2.8037 29 1 1.8292 0.2176 7.3076 30 1 3.0869 0.9965 -1.9679 31 1 3.9089 -0.1601 -3.9791 32 1 3.4323 -4.4062 -5.6957 33 1 1.8938 -3.7214 -2.7453 34 1 1.0759 -2.5576 -0.7365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413011665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:54 Heat of formation + Delta-G solvation = -150.249734 kcal Electronic energy + Delta-G solvation = -19858.747558 eV Core-core repulsion = 16324.503916 eV Total energy + Delta-G solvation = -3534.243642 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.30097 -48.30747 -41.06704 -38.86223 -35.22442 -34.74859 -32.09486 -31.50476 -30.04489 -27.03672 -24.98152 -24.61901 -23.81774 -22.10777 -20.02123 -19.16377 -19.09863 -18.86988 -17.60709 -17.18719 -16.42031 -16.33545 -15.84372 -15.67138 -15.32425 -15.10904 -14.94788 -14.78054 -14.64230 -14.48261 -14.44297 -14.30748 -13.75793 -13.71642 -13.31583 -12.97527 -12.75541 -12.60277 -12.31846 -12.12441 -11.89993 -11.85275 -11.62086 -10.89256 -10.58685 -10.04017 -9.30850 -8.51283 -8.37748 -6.47513 0.08164 0.30692 1.08525 1.33238 1.35559 1.46097 1.62549 1.97560 2.28843 2.58494 2.70152 2.95158 3.50875 3.59274 3.70215 3.75982 3.82203 4.03331 4.22095 4.34486 4.38473 4.56019 4.60181 4.73269 4.76610 4.85928 4.99380 5.10086 5.16435 5.24741 5.35984 5.50422 5.57811 6.03104 6.06854 6.56550 7.14854 8.78360 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.034463 B = 0.003327 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.266356 B = 8414.568000 C = 8717.164706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.012 4.012 3 H 0.100 0.900 4 S -0.301 6.301 5 C 0.052 3.948 6 C -0.530 4.530 7 H 0.032 0.968 8 C 0.018 3.982 9 N -0.942 5.942 10 Si 0.954 3.046 11 H -0.261 1.261 12 H -0.277 1.277 13 H -0.244 1.244 14 C -0.093 4.093 15 C -0.072 4.072 16 C -0.133 4.133 17 C 0.094 3.906 18 O -0.324 6.324 19 C 0.403 3.597 20 F -0.213 7.213 21 F -0.211 7.211 22 C -0.198 4.198 23 C -0.074 4.074 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.272 0.728 30 H 0.156 0.844 31 H 0.160 0.840 32 H 0.238 0.762 33 H 0.133 0.867 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.689 -1.216 -27.541 27.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 H 0.119 0.881 4 S -0.071 6.071 5 C -0.096 4.096 6 C -0.568 4.568 7 H 0.051 0.949 8 C -0.182 4.182 9 N -0.581 5.581 10 Si 0.776 3.224 11 H -0.185 1.185 12 H -0.202 1.202 13 H -0.167 1.167 14 C -0.094 4.094 15 C -0.091 4.091 16 C -0.152 4.152 17 C 0.051 3.949 18 O -0.242 6.242 19 C 0.314 3.686 20 F -0.195 7.195 21 F -0.193 7.193 22 C -0.217 4.217 23 C -0.093 4.093 24 H 0.073 0.927 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.174 0.826 31 H 0.178 0.822 32 H 0.254 0.746 33 H 0.151 0.849 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.023 -2.091 -27.361 27.441 hybrid contribution -1.080 0.953 1.067 1.792 sum -1.103 -1.138 -26.294 26.342 Atomic orbital electron populations 1.22063 0.91831 1.03190 1.02780 1.22034 0.99386 1.00987 0.91545 0.88136 1.87037 1.76786 1.41322 1.01946 1.21196 0.98581 0.96122 0.93730 1.20696 1.36767 1.09492 0.89880 0.94929 1.25927 0.96346 1.01727 0.94170 1.70032 1.47587 1.41845 0.98601 0.85611 0.79218 0.78426 0.79177 1.18535 1.20245 1.16705 1.19351 1.00429 0.94551 0.95073 1.21144 0.94686 1.01013 0.92265 1.20666 1.03369 0.91473 0.99645 1.19047 0.96015 0.93337 0.86546 1.86596 1.71009 1.25640 1.40914 1.24335 0.75493 0.77409 0.91320 1.93087 1.88198 1.76960 1.61288 1.93077 1.33759 1.95613 1.96810 1.21538 1.02512 1.01179 0.96476 1.20897 0.98325 0.94048 0.96067 0.92696 0.89581 0.91828 0.94164 0.93973 0.91856 0.82618 0.82193 0.74643 0.84901 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 8.91 71.98 0.64 -3.13 16 2 C -0.01 -0.35 3.01 29.85 0.09 -0.26 16 3 H 0.10 2.79 7.87 -2.40 -0.02 2.77 16 4 S -0.30 -12.80 20.68 -56.49 -1.17 -13.97 16 5 C 0.05 2.47 4.46 71.24 0.32 2.79 16 6 C -0.53 -31.41 9.68 25.60 0.25 -31.16 16 7 H 0.03 2.19 7.96 -2.91 -0.02 2.17 16 8 C 0.02 1.05 5.47 84.65 0.46 1.51 16 9 N -0.94 -58.95 13.96 21.44 0.30 -58.65 16 10 Si 0.95 42.84 27.47 68.60 1.88 44.72 16 11 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 14 C -0.09 -2.55 4.78 -19.85 -0.09 -2.64 16 15 C -0.07 -1.61 9.66 22.25 0.22 -1.39 16 16 C -0.13 -2.76 9.99 22.37 0.22 -2.54 16 17 C 0.09 2.18 6.48 22.51 0.15 2.33 16 18 O -0.32 -5.94 10.43 -92.47 -0.96 -6.91 16 19 C 0.40 5.31 5.98 113.37 0.68 5.99 16 20 F -0.21 -4.05 15.56 44.97 0.70 -3.35 16 21 F -0.21 -3.64 15.60 44.97 0.70 -2.94 16 22 C -0.20 -5.15 8.26 22.36 0.18 -4.97 16 23 C -0.07 -2.10 8.77 22.25 0.20 -1.91 16 24 H 0.05 1.57 6.92 -2.38 -0.02 1.55 16 25 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.06 1.75 7.38 -2.38 -0.02 1.74 16 27 H 0.04 1.86 7.20 -2.39 -0.02 1.84 16 28 H 0.04 1.91 6.57 -2.39 -0.02 1.90 16 29 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 30 H 0.16 2.70 7.94 -2.91 -0.02 2.68 16 31 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.24 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.13 3.31 5.10 -2.91 -0.01 3.30 16 34 H 0.12 3.69 7.57 -2.91 -0.02 3.67 16 Total: -1.00 -72.55 307.08 5.82 -66.73 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.06 Total: 9.74 kcal Atomic # 6 Polarization: -38.69 SS G_CDS: 3.31 Total: -35.38 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.30 Total: -58.65 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.96 Total: -6.91 kcal Atomic # 9 Polarization: -7.69 SS G_CDS: 1.40 Total: -6.29 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.72 kcal Atomic # 16 Polarization: -12.80 SS G_CDS: -1.17 Total: -13.97 kcal Total: -72.55 5.82 -66.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413011665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.521 kcal (2) G-P(sol) polarization free energy of solvation -72.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds