Wall clock time and date at job start Tue Mar 31 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47355 * 2 1 4 4 S 1.81397 * 109.47272 * 239.99869 * 2 1 3 5 5 C 1.81401 * 102.99796 * 64.99835 * 4 2 1 6 6 C 1.50706 * 109.46803 * 179.97438 * 5 4 2 7 7 H 1.07996 * 120.00172 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99511 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99749 * 180.02562 * 8 6 5 10 10 Si 1.86794 * 120.00217 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47156 * 90.00347 * 10 8 6 12 12 H 1.48501 * 109.47194 * 210.00169 * 10 8 6 13 13 H 1.48505 * 109.47595 * 330.00477 * 10 8 6 14 14 C 1.50701 * 109.47021 * 119.99938 * 2 1 3 15 15 C 1.38265 * 119.94825 * 239.99988 * 14 2 1 16 16 C 1.38141 * 120.06229 * 180.02562 * 15 14 2 17 17 C 1.38737 * 119.93972 * 359.97438 * 16 15 14 18 18 O 1.35897 * 120.05333 * 180.02562 * 17 16 15 19 19 C 1.42905 * 117.00093 * 180.02562 * 18 17 16 20 20 F 1.39900 * 109.46866 * 300.00358 * 19 18 17 21 21 F 1.39897 * 109.46886 * 59.99818 * 19 18 17 22 22 C 1.38737 * 119.89063 * 0.27773 * 17 16 15 23 23 C 1.38149 * 119.94020 * 359.46855 * 22 17 16 24 24 H 1.08998 * 109.47355 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47290 * 299.99867 * 1 2 3 26 26 H 1.09001 * 109.47251 * 59.99674 * 1 2 3 27 27 H 1.08991 * 109.47380 * 300.00442 * 5 4 2 28 28 H 1.09004 * 109.47139 * 60.00363 * 5 4 2 29 29 H 0.96996 * 119.99820 * 179.97438 * 9 8 6 30 30 H 1.08005 * 119.96603 * 0.02562 * 15 14 2 31 31 H 1.07997 * 120.03246 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.47187 * 179.97438 * 19 18 17 33 33 H 1.08000 * 120.02659 * 179.72232 * 22 17 16 34 34 H 1.07994 * 119.96900 * 180.27568 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1347 -0.8551 -1.4811 5 6 1.5664 0.2153 -2.8308 6 6 1.9984 -0.3690 -4.1511 7 1 2.5585 -1.2921 -4.1758 8 6 1.6787 0.2751 -5.3276 9 7 2.0553 -0.2350 -6.4798 10 14 0.7095 1.8713 -5.2850 11 1 1.6487 3.0187 -5.2023 12 1 -0.1068 1.9879 -6.5200 13 1 -0.1840 1.8766 -4.0988 14 6 2.0323 -0.7104 1.2305 15 6 2.8271 -0.0374 2.1399 16 6 3.2893 -0.6865 3.2684 17 6 2.9548 -2.0147 3.4890 18 8 3.4078 -2.6553 4.5986 19 6 3.0243 -4.0224 4.7606 20 9 1.6293 -4.1117 4.8180 21 9 3.4951 -4.7703 3.6761 22 6 2.1615 -2.6894 2.5724 23 6 1.6975 -2.0342 1.4481 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.4793 0.2882 -2.8037 28 1 2.0001 1.2085 -2.7141 29 1 1.8301 0.2178 -7.3074 30 1 3.0869 0.9967 1.9678 31 1 3.9105 -0.1605 3.9782 32 1 3.4521 -4.4129 5.6839 33 1 1.9034 -3.7247 2.7397 34 1 1.0762 -2.5576 0.7366 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413011667.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:55 Heat of formation + Delta-G solvation = -150.252630 kcal Electronic energy + Delta-G solvation = -19859.701836 eV Core-core repulsion = 16325.458068 eV Total energy + Delta-G solvation = -3534.243767 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.30174 -48.30803 -41.06656 -38.86221 -35.22403 -34.74939 -32.09381 -31.50490 -30.04491 -27.03707 -24.98256 -24.61842 -23.81745 -22.10813 -20.02108 -19.16411 -19.09978 -18.87006 -17.60277 -17.18726 -16.42196 -16.33793 -15.84380 -15.67110 -15.31861 -15.10934 -14.94547 -14.82199 -14.64605 -14.46940 -14.42370 -14.28459 -13.75455 -13.72763 -13.32498 -12.97870 -12.76504 -12.59160 -12.32680 -12.10827 -11.91114 -11.84873 -11.61924 -10.89350 -10.58657 -10.03940 -9.30804 -8.51221 -8.37763 -6.47467 0.08208 0.30710 1.08551 1.33299 1.35636 1.46157 1.62546 1.97610 2.28897 2.58515 2.70149 2.95171 3.50883 3.59277 3.70215 3.76027 3.82234 4.03271 4.22051 4.34472 4.38527 4.56019 4.60636 4.72293 4.76838 4.85948 4.99423 5.10124 5.16245 5.24728 5.36085 5.50474 5.57817 6.03150 6.06880 6.56593 7.14851 8.78388 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.034400 B = 0.003329 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.766955 B = 8409.014117 C = 8714.034326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.011 4.011 3 H 0.101 0.899 4 S -0.301 6.301 5 C 0.051 3.949 6 C -0.530 4.530 7 H 0.032 0.968 8 C 0.018 3.982 9 N -0.942 5.942 10 Si 0.954 3.046 11 H -0.261 1.261 12 H -0.277 1.277 13 H -0.243 1.243 14 C -0.093 4.093 15 C -0.071 4.071 16 C -0.133 4.133 17 C 0.094 3.906 18 O -0.324 6.324 19 C 0.403 3.597 20 F -0.211 7.211 21 F -0.213 7.213 22 C -0.199 4.199 23 C -0.074 4.074 24 H 0.062 0.938 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.272 0.728 30 H 0.157 0.843 31 H 0.161 0.839 32 H 0.238 0.762 33 H 0.133 0.867 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.667 -1.224 27.533 27.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.139 4.139 3 H 0.119 0.881 4 S -0.071 6.071 5 C -0.096 4.096 6 C -0.568 4.568 7 H 0.051 0.949 8 C -0.182 4.182 9 N -0.581 5.581 10 Si 0.776 3.224 11 H -0.186 1.186 12 H -0.203 1.203 13 H -0.167 1.167 14 C -0.094 4.094 15 C -0.091 4.091 16 C -0.152 4.152 17 C 0.051 3.949 18 O -0.242 6.242 19 C 0.314 3.686 20 F -0.193 7.193 21 F -0.195 7.195 22 C -0.217 4.217 23 C -0.093 4.093 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.174 0.826 31 H 0.178 0.822 32 H 0.254 0.746 33 H 0.151 0.849 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.003 -2.101 27.352 27.433 hybrid contribution -1.056 0.965 -1.068 1.786 sum -1.059 -1.135 26.283 26.329 Atomic orbital electron populations 1.22057 0.91880 1.03162 1.02729 1.22032 0.99343 1.01025 0.91548 0.88065 1.87036 1.76758 1.41346 1.01949 1.21198 0.98737 0.95993 0.93716 1.20699 1.36730 1.09525 0.89889 0.94935 1.25931 0.96297 1.01783 0.94170 1.70028 1.47569 1.41855 0.98611 0.85607 0.79328 0.78492 0.78976 1.18551 1.20269 1.16676 1.19349 1.00430 0.94554 0.95070 1.21144 0.94679 1.01031 0.92237 1.20665 1.03382 0.91438 0.99666 1.19049 0.95981 0.93315 0.86601 1.86594 1.71006 1.25434 1.41125 1.24336 0.75554 0.77440 0.91228 1.93076 1.33815 1.95579 1.96789 1.93086 1.88173 1.77217 1.61056 1.21543 1.02481 1.01157 0.96535 1.20898 0.98319 0.94052 0.96076 0.91849 0.89584 0.92794 0.93815 0.94298 0.91856 0.82591 0.82188 0.74640 0.84908 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 8.91 71.98 0.64 -3.14 16 2 C -0.01 -0.35 3.01 29.85 0.09 -0.26 16 3 H 0.10 2.80 7.87 -2.39 -0.02 2.78 16 4 S -0.30 -12.80 20.68 -56.49 -1.17 -13.97 16 5 C 0.05 2.47 4.46 71.24 0.32 2.78 16 6 C -0.53 -31.41 9.68 25.60 0.25 -31.16 16 7 H 0.03 2.19 7.96 -2.91 -0.02 2.17 16 8 C 0.02 1.04 5.47 84.66 0.46 1.51 16 9 N -0.94 -58.95 13.96 21.45 0.30 -58.65 16 10 Si 0.95 42.84 27.47 68.60 1.88 44.72 16 11 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 12 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 13 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 14 C -0.09 -2.55 4.78 -19.85 -0.09 -2.64 16 15 C -0.07 -1.60 9.66 22.25 0.22 -1.38 16 16 C -0.13 -2.76 9.99 22.37 0.22 -2.54 16 17 C 0.09 2.18 6.48 22.51 0.15 2.33 16 18 O -0.32 -5.94 10.43 -92.39 -0.96 -6.91 16 19 C 0.40 5.31 5.98 113.37 0.68 5.99 16 20 F -0.21 -3.64 15.60 44.97 0.70 -2.94 16 21 F -0.21 -4.05 15.57 44.97 0.70 -3.35 16 22 C -0.20 -5.16 8.26 22.37 0.18 -4.97 16 23 C -0.07 -2.11 8.77 22.26 0.20 -1.91 16 24 H 0.06 1.76 7.38 -2.39 -0.02 1.74 16 25 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 26 H 0.05 1.56 6.92 -2.39 -0.02 1.55 16 27 H 0.04 2.01 6.20 -2.39 -0.01 1.99 16 28 H 0.04 1.77 7.57 -2.39 -0.02 1.75 16 29 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 30 H 0.16 2.69 7.94 -2.91 -0.02 2.67 16 31 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.24 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.13 3.31 5.10 -2.91 -0.01 3.30 16 34 H 0.12 3.69 7.57 -2.91 -0.02 3.67 16 Total: -1.00 -72.56 307.07 5.82 -66.74 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.06 Total: 9.76 kcal Atomic # 6 Polarization: -38.71 SS G_CDS: 3.31 Total: -35.40 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.30 Total: -58.65 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.96 Total: -6.91 kcal Atomic # 9 Polarization: -7.70 SS G_CDS: 1.40 Total: -6.30 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.72 kcal Atomic # 16 Polarization: -12.80 SS G_CDS: -1.17 Total: -13.97 kcal Total: -72.56 5.82 -66.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413011667.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.511 kcal (2) G-P(sol) polarization free energy of solvation -72.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds