Wall clock time and date at job start Tue Mar 31 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39142 * 119.99813 * 2 1 4 4 C 1.39106 * 119.67854 * 359.72110 * 3 2 1 5 5 C 1.38305 * 119.12519 * 179.79748 * 4 3 2 6 6 C 1.39042 * 118.48402 * 0.46973 * 5 4 3 7 7 F 1.35100 * 120.36221 * 179.76923 * 6 5 4 8 8 C 1.38219 * 119.27954 * 359.75398 * 6 5 4 9 9 N 1.31994 * 120.81943 * 0.02562 * 8 6 5 10 10 S 1.65599 * 120.00372 * 179.97438 * 2 1 3 11 11 O 1.42105 * 104.27655 * 333.92882 * 10 2 1 12 12 O 1.42101 * 104.27764 * 206.07319 * 10 2 1 13 13 C 1.81395 * 104.44748 * 90.00187 * 10 2 1 14 14 C 1.52999 * 109.46986 * 180.02562 * 13 10 2 15 15 C 1.50700 * 109.47535 * 180.02562 * 14 13 10 16 16 H 1.08006 * 119.99840 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00463 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00062 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00103 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47261 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47286 * 119.99607 * 19 17 15 22 22 H 1.48501 * 109.47023 * 239.99779 * 19 17 15 23 23 H 1.09001 * 109.47025 * 269.99972 * 1 2 3 24 24 H 1.09000 * 109.47507 * 30.00633 * 1 2 3 25 25 H 1.09004 * 109.46776 * 150.00321 * 1 2 3 26 26 H 1.08006 * 120.43556 * 0.02562 * 4 3 2 27 27 H 1.07999 * 120.76263 * 180.24830 * 5 4 3 28 28 H 1.08000 * 119.58801 * 179.97438 * 8 6 5 29 29 H 1.09003 * 109.47393 * 299.99669 * 13 10 2 30 30 H 1.08994 * 109.47678 * 60.00285 * 13 10 2 31 31 H 1.09004 * 109.47080 * 299.99725 * 14 13 10 32 32 H 1.09005 * 109.47285 * 59.99790 * 14 13 10 33 33 H 0.96996 * 119.99792 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1607 1.2050 0.0000 4 6 1.4584 2.4058 -0.0059 5 6 2.1614 3.5968 -0.0015 6 6 3.5509 3.5467 -0.0014 7 9 4.2753 4.6870 -0.0020 8 6 4.1830 2.3175 -0.0005 9 7 3.4841 1.1977 -0.0001 10 16 2.2931 -1.4341 0.0006 11 8 1.3971 -2.3559 0.6063 12 8 3.5395 -1.1187 0.6058 13 6 2.5194 -1.8268 -1.7558 14 6 3.2810 -3.1470 -1.8891 15 6 3.4697 -3.4730 -3.3483 16 1 3.0845 -2.8055 -4.1050 17 6 4.1331 -4.6239 -3.7174 18 7 4.6017 -5.4371 -2.7961 19 14 4.3663 -5.0283 -5.5261 20 1 3.7506 -3.9613 -6.3553 21 1 5.8170 -5.1172 -5.8305 22 1 3.7161 -6.3283 -5.8305 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5139 25 1 -0.3633 -0.8901 -0.5138 26 1 0.3783 2.4079 -0.0100 27 1 1.6429 4.5443 -0.0019 28 1 5.2620 2.2727 -0.0008 29 1 1.5452 -1.9197 -2.2358 30 1 3.0867 -1.0296 -2.2362 31 1 4.2553 -3.0546 -1.4090 32 1 2.7134 -3.9441 -1.4088 33 1 5.0688 -6.2466 -3.0558 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451947448.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:45 Heat of formation + Delta-G solvation = -89.508519 kcal Electronic energy + Delta-G solvation = -20662.077183 eV Core-core repulsion = 17150.387440 eV Total energy + Delta-G solvation = -3511.689743 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.87161 -41.40016 -38.23405 -37.30084 -36.94901 -35.92551 -33.61111 -33.16505 -30.90249 -27.79706 -27.52757 -25.14918 -23.91678 -23.32901 -20.57955 -19.36517 -18.79626 -18.57134 -18.33294 -17.35640 -17.15353 -16.71775 -16.62354 -16.48515 -15.73610 -15.56852 -15.15095 -14.78504 -14.51208 -14.44600 -14.09698 -13.86967 -13.75664 -13.23038 -13.19402 -13.08101 -12.96602 -12.80483 -12.74048 -12.29792 -12.12855 -11.83069 -11.58677 -11.04305 -10.98338 -10.67043 -10.47160 -9.26021 -8.27602 -6.42082 -0.87155 -0.06776 0.12814 1.40018 1.41008 1.42332 1.54294 2.36756 2.51632 2.83417 2.86265 3.05757 3.10263 3.17426 3.76139 3.77673 3.88688 3.98193 4.09316 4.19300 4.49448 4.52338 4.68012 4.70892 4.81288 4.95154 4.99402 5.19875 5.22817 5.27375 5.66091 5.73451 6.03642 6.71058 6.77233 7.28226 8.85029 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.020242 B = 0.004537 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.962651 B = 6169.858454 C = 6864.477914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.924 5.924 3 C 0.342 3.658 4 C -0.161 4.161 5 C -0.064 4.064 6 C 0.008 3.992 7 F -0.134 7.134 8 C 0.102 3.898 9 N -0.519 5.519 10 S 2.600 3.400 11 O -0.982 6.982 12 O -0.954 6.954 13 C -0.579 4.579 14 C 0.024 3.976 15 C -0.539 4.539 16 H 0.074 0.926 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.975 3.025 20 H -0.256 1.256 21 H -0.278 1.278 22 H -0.275 1.275 23 H 0.083 0.917 24 H 0.125 0.875 25 H 0.091 0.909 26 H 0.191 0.809 27 H 0.191 0.809 28 H 0.177 0.823 29 H 0.144 0.856 30 H 0.131 0.869 31 H 0.005 0.995 32 H 0.010 0.990 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.463 20.506 3.572 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.750 5.750 3 C 0.111 3.889 4 C -0.186 4.186 5 C -0.090 4.090 6 C -0.016 4.016 7 F -0.113 7.113 8 C -0.057 4.057 9 N -0.233 5.233 10 S 2.699 3.301 11 O -0.973 6.973 12 O -0.943 6.943 13 C -0.711 4.711 14 C -0.015 4.015 15 C -0.578 4.578 16 H 0.092 0.908 17 C -0.201 4.201 18 N -0.573 5.573 19 Si 0.799 3.201 20 H -0.180 1.180 21 H -0.204 1.204 22 H -0.201 1.201 23 H 0.102 0.898 24 H 0.143 0.857 25 H 0.110 0.890 26 H 0.208 0.792 27 H 0.208 0.792 28 H 0.194 0.806 29 H 0.162 0.838 30 H 0.149 0.851 31 H 0.023 0.977 32 H 0.028 0.972 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.753 19.026 4.422 21.833 hybrid contribution 0.321 0.224 -1.122 1.188 sum -9.432 19.251 3.300 21.690 Atomic orbital electron populations 1.22281 0.73720 1.06703 1.05297 1.55590 1.17632 1.18447 1.83377 1.18617 0.88365 0.86897 0.95050 1.21900 1.03533 0.88621 1.04501 1.21880 0.91108 1.01124 0.94934 1.18710 0.91282 0.82697 1.08875 1.91507 1.77673 1.47751 1.94337 1.22844 1.01569 0.85384 0.95863 1.67510 1.06902 1.31912 1.16999 1.05468 0.73324 0.72638 0.78694 1.93524 1.65938 1.62458 1.75338 1.93582 1.44204 1.81812 1.74729 1.30267 1.10736 1.07838 1.22278 1.18803 0.94140 0.89472 0.99100 1.21510 1.37054 1.07383 0.91879 0.90787 1.26117 0.94787 0.95929 1.03266 1.70109 1.38323 1.13349 1.35537 0.85246 0.78064 0.78543 0.78280 1.18005 1.20367 1.20075 0.89790 0.85675 0.89027 0.79219 0.79201 0.80625 0.83816 0.85089 0.97687 0.97211 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.00 9.65 127.77 1.23 2.23 16 2 N -0.92 -24.49 3.31 -366.47 -1.21 -25.70 16 3 C 0.34 8.84 7.30 133.02 0.97 9.81 16 4 C -0.16 -2.49 9.23 22.49 0.21 -2.28 16 5 C -0.06 -0.89 10.15 22.48 0.23 -0.66 16 6 C 0.01 0.15 7.34 22.46 0.16 0.32 16 7 F -0.13 -2.65 17.28 44.97 0.78 -1.87 16 8 C 0.10 2.61 11.16 84.66 0.94 3.55 16 9 N -0.52 -16.51 7.63 -193.04 -1.47 -17.98 16 10 S 2.60 98.60 5.24 -56.49 -0.30 98.31 16 11 O -0.98 -40.94 17.09 -127.65 -2.18 -43.13 16 12 O -0.95 -43.00 15.46 -127.65 -1.97 -44.97 16 13 C -0.58 -23.04 6.12 71.98 0.44 -22.60 16 14 C 0.02 1.28 4.98 29.85 0.15 1.43 16 15 C -0.54 -30.42 9.11 25.60 0.23 -30.18 16 16 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 17 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 18 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 19 Si 0.98 43.60 29.54 68.60 2.03 45.62 16 20 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 23 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.13 0.88 6.15 -2.39 -0.01 0.86 16 25 H 0.09 1.45 7.79 -2.39 -0.02 1.43 16 26 H 0.19 1.24 6.12 -2.91 -0.02 1.23 16 27 H 0.19 1.09 8.06 -2.91 -0.02 1.06 16 28 H 0.18 4.01 8.06 -2.91 -0.02 3.98 16 29 H 0.14 4.82 8.14 -2.39 -0.02 4.80 16 30 H 0.13 4.92 8.14 -2.39 -0.02 4.90 16 31 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -81.07 303.59 2.12 -78.95 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.13 Total: 5.89 kcal Atomic # 6 Polarization: -43.10 SS G_CDS: 5.03 Total: -38.07 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -2.40 Total: -100.73 kcal Atomic # 8 Polarization: -83.94 SS G_CDS: -4.16 Total: -88.10 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 98.60 SS G_CDS: -0.30 Total: 98.31 kcal Total: -81.07 2.12 -78.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451947448.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.554 kcal (2) G-P(sol) polarization free energy of solvation -81.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds