Wall clock time and date at job start Tue Mar 31 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99901 * 2 1 4 4 H 1.48492 * 109.47348 * 269.99818 * 3 2 1 5 5 H 1.48503 * 109.47228 * 30.00198 * 3 2 1 6 6 H 1.48503 * 109.46963 * 149.99770 * 3 2 1 7 7 C 1.37878 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00320 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99655 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47016 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47135 * 180.02562 * 10 9 7 12 12 C 1.35495 * 119.18791 * 265.00224 * 11 10 9 13 13 C 1.34916 * 122.52859 * 180.02562 * 12 11 10 14 14 N 1.48016 * 119.95635 * 179.97438 * 13 12 11 15 15 O 1.21806 * 120.00122 * 0.02562 * 14 13 12 16 16 O 1.21805 * 120.00152 * 179.97438 * 14 13 12 17 17 C 1.41463 * 120.09033 * 0.02562 * 13 12 11 18 18 O 1.22006 * 121.11300 * 179.97438 * 17 13 12 19 19 C 1.47343 * 117.77702 * 359.93335 * 17 13 12 20 20 C 1.39481 * 121.47636 * 180.09170 * 19 17 13 21 21 C 1.36699 * 119.67298 * 179.97438 * 20 19 17 22 22 C 1.38817 * 120.54176 * 0.02562 * 21 20 19 23 23 C 1.37759 * 120.70174 * 359.97438 * 22 21 20 24 24 C 1.37685 * 119.19227 * 84.97620 * 11 10 9 25 25 H 0.96999 * 119.99933 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47611 * 60.00043 * 9 7 2 27 27 H 1.09002 * 109.47345 * 299.99874 * 9 7 2 28 28 H 1.09003 * 109.46878 * 60.00088 * 10 9 7 29 29 H 1.09002 * 109.47007 * 300.00137 * 10 9 7 30 30 H 1.07996 * 118.73729 * 359.72170 * 12 11 10 31 31 H 1.07997 * 120.16398 * 359.94937 * 20 19 17 32 32 H 1.08002 * 119.72906 * 179.97438 * 21 20 19 33 33 H 1.07992 * 119.64755 * 179.97438 * 22 21 20 34 34 H 1.08003 * 120.15098 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 7 5.4866 -2.6365 0.0011 12 6 6.1483 -2.7391 -1.1768 13 6 7.4953 -2.7464 -1.2540 14 7 8.1595 -2.8617 -2.5717 15 8 7.4901 -2.9495 -3.5856 16 8 9.3754 -2.8679 -2.6424 17 6 8.2737 -2.6451 -0.0771 18 8 9.4928 -2.6502 -0.1252 19 6 7.5630 -2.5321 1.2086 20 6 8.2538 -2.4261 2.4157 21 6 7.5570 -2.3227 3.5873 22 6 6.1689 -2.3228 3.5849 23 6 5.4676 -2.4265 2.4037 24 6 6.1572 -2.5317 1.1991 25 1 -0.4850 0.8400 0.0004 26 1 3.8746 -0.6808 0.8905 27 1 3.8753 -0.6796 -0.8895 28 1 3.6586 -3.1501 -0.8904 29 1 3.6579 -3.1506 0.8897 30 1 5.5756 -2.8231 -2.0885 31 1 9.3337 -2.4262 2.4248 32 1 8.0910 -2.2410 4.5225 33 1 5.6330 -2.2408 4.5189 34 1 4.3876 -2.4262 2.4122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487898496.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:01 Heat of formation + Delta-G solvation = 4.464316 kcal Electronic energy + Delta-G solvation = -22295.354451 eV Core-core repulsion = 18775.756029 eV Total energy + Delta-G solvation = -3519.598422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.11700 -41.20791 -38.54277 -37.90731 -36.09060 -34.36886 -32.87814 -31.42473 -31.12606 -30.05804 -26.64416 -25.41883 -24.60213 -23.23918 -22.15110 -20.97061 -19.64020 -19.11258 -18.11818 -17.56732 -17.33329 -17.22306 -16.38473 -15.65690 -15.47129 -15.10876 -14.71511 -14.53728 -14.51256 -13.79343 -13.52341 -13.40956 -12.93567 -12.58419 -12.28511 -11.91279 -11.54276 -11.39620 -11.21458 -11.05724 -10.77499 -10.75186 -10.59144 -10.21737 -9.85772 -9.81801 -9.73017 -9.34906 -8.91421 -8.20092 -6.41774 -4.46633 0.01574 0.46778 1.15889 1.47652 1.55347 2.35750 2.73908 3.06001 3.14342 3.16944 3.61230 3.81205 4.11675 4.17703 4.30267 4.46138 4.56321 4.88222 4.90190 4.97726 5.03098 5.16709 5.32797 5.38761 5.58820 5.62366 5.72385 5.98853 6.14641 6.17728 6.27707 6.54739 6.62631 6.65272 6.74577 7.26360 7.53458 8.04056 8.04683 8.56878 9.17002 10.69989 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.005787 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.811101 B = 4837.390319 C = 6113.933334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.080 3.920 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.537 4.537 8 H 0.079 0.921 9 C -0.028 4.028 10 C 0.091 3.909 11 N -0.456 5.456 12 C 0.284 3.716 13 C -0.264 4.264 14 N 0.066 4.934 15 O -0.207 6.207 16 O -0.145 6.145 17 C 0.433 3.567 18 O -0.456 6.456 19 C -0.176 4.176 20 C -0.036 4.036 21 C -0.144 4.144 22 C -0.060 4.060 23 C -0.144 4.144 24 C 0.169 3.831 25 H 0.269 0.731 26 H 0.029 0.971 27 H 0.022 0.978 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.191 0.809 31 H 0.142 0.858 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.778 -5.504 6.787 13.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.701 3.299 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.575 4.575 8 H 0.097 0.903 9 C -0.066 4.066 10 C -0.028 4.028 11 N -0.140 5.140 12 C 0.141 3.859 13 C -0.360 4.360 14 N 0.578 4.422 15 O -0.409 6.409 16 O -0.364 6.364 17 C 0.316 3.684 18 O -0.335 6.335 19 C -0.180 4.180 20 C -0.054 4.054 21 C -0.162 4.162 22 C -0.079 4.079 23 C -0.163 4.163 24 C 0.070 3.930 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.208 0.792 31 H 0.160 0.840 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.665 -5.339 7.412 13.299 hybrid contribution 0.232 1.003 -0.453 1.124 sum 9.897 -4.337 6.960 12.853 Atomic orbital electron populations 1.69865 1.06258 1.27594 1.48694 1.24914 0.94711 0.99107 0.93732 0.86863 0.80282 0.83705 0.79018 1.19869 1.20794 1.19133 1.20712 0.87660 0.95144 1.53954 0.90261 1.20030 0.98609 0.89800 0.98117 1.22861 0.70914 1.03254 1.05721 1.44225 1.10269 1.56733 1.02756 1.21538 0.92440 0.80569 0.91334 1.21641 0.92957 1.34887 0.86497 1.42698 1.01030 0.97175 1.01268 1.94500 1.65165 1.56481 1.24767 1.94586 0.95131 1.53454 1.93237 1.17738 0.88920 0.75787 0.85964 1.90835 1.13474 1.40988 1.88175 1.20077 0.91323 1.10655 0.95935 1.20809 1.00895 0.93614 0.90097 1.20984 0.94288 1.02505 0.98432 1.21279 0.94195 0.94510 0.97925 1.21129 1.01543 1.03740 0.89936 1.18108 0.90779 0.98121 0.86020 0.92082 0.95285 0.95954 0.87796 0.87850 0.79195 0.83978 0.84763 0.84367 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.37 13.96 55.43 0.77 -23.60 16 2 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 19.39 27.47 -169.99 -4.67 14.72 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -5.70 6.54 56.52 0.37 -5.33 16 7 C -0.54 -12.57 9.66 -34.44 -0.33 -12.91 16 8 H 0.08 1.97 7.99 -52.49 -0.42 1.55 16 9 C -0.03 -0.51 4.25 -27.88 -0.12 -0.63 16 10 C 0.09 1.23 4.90 -4.04 -0.02 1.21 16 11 N -0.46 -6.01 2.66 -114.62 -0.31 -6.31 16 12 C 0.28 3.79 9.72 -17.11 -0.17 3.62 16 13 C -0.26 -4.26 6.85 -79.90 -0.55 -4.81 16 14 N 0.07 1.20 4.45 33.99 0.15 1.35 16 15 O -0.21 -3.63 18.35 -29.46 -0.54 -4.17 16 16 O -0.15 -2.88 17.49 -36.31 -0.63 -3.51 16 17 C 0.43 7.23 6.95 -34.65 -0.24 6.99 16 18 O -0.46 -8.74 15.59 -16.55 -0.26 -8.99 16 19 C -0.18 -2.47 5.89 -104.85 -0.62 -3.09 16 20 C -0.04 -0.41 9.61 -39.67 -0.38 -0.80 16 21 C -0.14 -1.32 9.98 -39.92 -0.40 -1.72 16 22 C -0.06 -0.56 10.01 -39.54 -0.40 -0.96 16 23 C -0.14 -1.65 8.78 -39.40 -0.35 -2.00 16 24 C 0.17 2.23 6.49 -83.99 -0.55 1.69 16 25 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.03 0.55 6.72 -51.93 -0.35 0.20 16 27 H 0.02 0.43 7.57 -51.93 -0.39 0.03 16 28 H 0.10 1.25 7.88 -51.93 -0.41 0.84 16 29 H 0.10 1.26 6.44 -51.93 -0.33 0.93 16 30 H 0.19 2.09 7.32 -52.49 -0.38 1.71 16 31 H 0.14 1.54 7.79 -52.49 -0.41 1.13 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.15 1.68 6.14 -52.48 -0.32 1.36 16 LS Contribution 301.57 15.07 4.54 4.54 Total: -1.00 -30.85 301.57 -8.18 -39.03 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -3.03 Total: -1.59 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -4.21 Total: -11.46 kcal Atomic # 7 Polarization: -29.18 SS G_CDS: 0.62 Total: -28.56 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -1.43 Total: -16.68 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.67 Total: 14.72 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.85 -8.18 -39.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487898496.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.490 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds