Wall clock time and date at job start Tue Mar 31 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99901 * 2 1 4 4 H 1.48492 * 109.47348 * 269.99818 * 3 2 1 5 5 H 1.48503 * 109.47228 * 30.00198 * 3 2 1 6 6 H 1.48503 * 109.46963 * 149.99770 * 3 2 1 7 7 C 1.37878 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00320 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99655 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47016 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47135 * 180.02562 * 10 9 7 12 12 C 1.35495 * 119.18791 * 265.00224 * 11 10 9 13 13 C 1.34916 * 122.52859 * 180.02562 * 12 11 10 14 14 N 1.48016 * 119.95635 * 179.97438 * 13 12 11 15 15 O 1.21806 * 120.00122 * 0.02562 * 14 13 12 16 16 O 1.21805 * 120.00152 * 179.97438 * 14 13 12 17 17 C 1.41463 * 120.09033 * 0.02562 * 13 12 11 18 18 O 1.22006 * 121.11300 * 179.97438 * 17 13 12 19 19 C 1.47343 * 117.77702 * 359.93335 * 17 13 12 20 20 C 1.39481 * 121.47636 * 180.09170 * 19 17 13 21 21 C 1.36699 * 119.67298 * 179.97438 * 20 19 17 22 22 C 1.38817 * 120.54176 * 0.02562 * 21 20 19 23 23 C 1.37759 * 120.70174 * 359.97438 * 22 21 20 24 24 C 1.37685 * 119.19227 * 84.97620 * 11 10 9 25 25 H 0.96999 * 119.99933 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47611 * 60.00043 * 9 7 2 27 27 H 1.09002 * 109.47345 * 299.99874 * 9 7 2 28 28 H 1.09003 * 109.46878 * 60.00088 * 10 9 7 29 29 H 1.09002 * 109.47007 * 300.00137 * 10 9 7 30 30 H 1.07996 * 118.73729 * 359.72170 * 12 11 10 31 31 H 1.07997 * 120.16398 * 359.94937 * 20 19 17 32 32 H 1.08002 * 119.72906 * 179.97438 * 21 20 19 33 33 H 1.07992 * 119.64755 * 179.97438 * 22 21 20 34 34 H 1.08003 * 120.15098 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 7 5.4866 -2.6365 0.0011 12 6 6.1483 -2.7391 -1.1768 13 6 7.4953 -2.7464 -1.2540 14 7 8.1595 -2.8617 -2.5717 15 8 7.4901 -2.9495 -3.5856 16 8 9.3754 -2.8679 -2.6424 17 6 8.2737 -2.6451 -0.0771 18 8 9.4928 -2.6502 -0.1252 19 6 7.5630 -2.5321 1.2086 20 6 8.2538 -2.4261 2.4157 21 6 7.5570 -2.3227 3.5873 22 6 6.1689 -2.3228 3.5849 23 6 5.4676 -2.4265 2.4037 24 6 6.1572 -2.5317 1.1991 25 1 -0.4850 0.8400 0.0004 26 1 3.8746 -0.6808 0.8905 27 1 3.8753 -0.6796 -0.8895 28 1 3.6586 -3.1501 -0.8904 29 1 3.6579 -3.1506 0.8897 30 1 5.5756 -2.8231 -2.0885 31 1 9.3337 -2.4262 2.4248 32 1 8.0910 -2.2410 4.5225 33 1 5.6330 -2.2408 4.5189 34 1 4.3876 -2.4262 2.4122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487898496.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:00 Heat of formation + Delta-G solvation = -11.679849 kcal Electronic energy + Delta-G solvation = -22296.054514 eV Core-core repulsion = 18775.756029 eV Total energy + Delta-G solvation = -3520.298485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.34601 -42.37622 -39.77443 -38.85005 -37.45682 -35.83847 -34.42161 -32.58324 -32.14085 -31.29951 -27.99246 -26.77677 -25.61541 -24.36328 -23.50701 -22.15456 -20.83019 -20.26844 -19.38782 -18.95600 -18.68193 -18.59179 -17.47224 -16.90522 -16.69828 -16.19079 -16.04119 -15.72646 -15.48001 -15.16027 -14.68541 -14.57659 -14.50821 -13.71180 -13.33701 -13.06300 -13.03122 -12.62331 -12.43753 -12.39081 -12.22274 -12.20067 -12.05606 -11.87375 -11.52908 -11.05012 -10.91294 -10.81530 -10.24610 -9.26657 -8.34074 -6.39335 -1.13839 -0.52754 0.02932 0.26261 0.48892 1.24693 1.31782 1.37528 1.42096 1.66836 2.29188 2.65892 2.74740 3.02909 3.16694 3.18311 3.50606 3.63471 3.98228 4.10404 4.14898 4.19830 4.22692 4.34561 4.53013 4.68222 4.77423 4.98457 5.09997 5.22579 5.25952 5.28937 5.33522 5.45312 5.54380 5.74966 6.15353 6.34195 6.63941 6.70676 7.26724 8.80897 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.005787 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.811101 B = 4837.390319 C = 6113.933334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.023 3.977 3 Si 0.927 3.073 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.250 1.250 7 C -0.523 4.523 8 H 0.059 0.941 9 C -0.027 4.027 10 C 0.099 3.901 11 N -0.443 5.443 12 C 0.303 3.697 13 C -0.286 4.286 14 N 0.070 4.930 15 O -0.186 6.186 16 O -0.211 6.211 17 C 0.423 3.577 18 O -0.499 6.499 19 C -0.192 4.192 20 C -0.048 4.048 21 C -0.125 4.125 22 C -0.048 4.048 23 C -0.148 4.148 24 C 0.150 3.850 25 H 0.267 0.733 26 H 0.031 0.969 27 H 0.021 0.979 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.218 0.782 31 H 0.142 0.858 32 H 0.171 0.829 33 H 0.175 0.825 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.423 -5.539 8.874 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.176 4.176 3 Si 0.753 3.247 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.173 1.173 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.065 4.065 10 C -0.019 4.019 11 N -0.125 5.125 12 C 0.158 3.842 13 C -0.382 4.382 14 N 0.575 4.425 15 O -0.396 6.396 16 O -0.414 6.414 17 C 0.309 3.691 18 O -0.381 6.381 19 C -0.195 4.195 20 C -0.066 4.066 21 C -0.143 4.143 22 C -0.066 4.066 23 C -0.168 4.168 24 C 0.051 3.949 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.040 0.960 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.235 0.765 31 H 0.160 0.840 32 H 0.189 0.811 33 H 0.192 0.808 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.445 -5.380 9.552 14.471 hybrid contribution 0.160 0.959 -0.961 1.367 sum 9.605 -4.421 8.591 13.624 Atomic orbital electron populations 1.69996 1.07959 1.28144 1.51726 1.25672 0.95204 1.02419 0.94305 0.86010 0.79702 0.80203 0.78807 1.20150 1.21357 1.17325 1.21065 0.90245 0.93873 1.50967 0.92314 1.19918 0.95394 0.93132 0.98059 1.22730 0.70790 1.00380 1.07965 1.44214 1.10072 1.55370 1.02880 1.21805 0.91509 0.78639 0.92287 1.21699 0.93952 1.37370 0.85179 1.42940 1.00858 0.96661 1.02012 1.94442 1.64785 1.54779 1.25621 1.94595 0.96052 1.57058 1.93711 1.18238 0.88691 0.74854 0.87318 1.90803 1.15009 1.43418 1.88859 1.20047 0.91778 1.12353 0.95359 1.21018 1.01262 0.94024 0.90320 1.21406 0.94486 0.99604 0.98773 1.21762 0.94318 0.91957 0.98598 1.21365 1.01975 1.03564 0.89883 1.18298 0.90499 0.99499 0.86564 0.92373 0.95030 0.96018 0.85682 0.85890 0.76545 0.83985 0.81126 0.80754 0.82395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -51.79 13.96 21.45 0.30 -51.49 16 2 C 0.02 1.15 5.47 84.65 0.46 1.62 16 3 Si 0.93 38.86 27.47 68.60 1.88 40.74 16 4 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.25 -9.63 6.54 99.48 0.65 -8.98 16 7 C -0.52 -23.56 9.66 25.60 0.25 -23.32 16 8 H 0.06 2.84 7.99 -2.91 -0.02 2.82 16 9 C -0.03 -0.91 4.25 29.85 0.13 -0.79 16 10 C 0.10 2.33 4.90 86.38 0.42 2.75 16 11 N -0.44 -10.34 2.66 -516.56 -1.38 -11.72 16 12 C 0.30 7.43 9.72 83.36 0.81 8.24 16 13 C -0.29 -9.14 6.85 36.41 0.25 -8.89 16 14 N 0.07 2.58 4.45 -46.39 -0.21 2.37 16 15 O -0.19 -6.42 18.35 18.88 0.35 -6.07 16 16 O -0.21 -8.87 17.49 25.42 0.44 -8.43 16 17 C 0.42 14.32 6.95 25.46 0.18 14.50 16 18 O -0.50 -20.07 15.59 15.19 0.24 -19.83 16 19 C -0.19 -5.12 5.89 -20.01 -0.12 -5.24 16 20 C -0.05 -1.01 9.61 22.21 0.21 -0.80 16 21 C -0.12 -1.75 9.98 22.05 0.22 -1.53 16 22 C -0.05 -0.65 10.01 22.29 0.22 -0.43 16 23 C -0.15 -2.79 8.78 22.39 0.20 -2.60 16 24 C 0.15 3.54 6.49 39.03 0.25 3.80 16 25 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 26 H 0.03 1.08 6.72 -2.39 -0.02 1.06 16 27 H 0.02 0.75 7.57 -2.39 -0.02 0.73 16 28 H 0.13 2.49 7.88 -2.39 -0.02 2.47 16 29 H 0.12 2.49 6.44 -2.39 -0.02 2.47 16 30 H 0.22 4.06 7.32 -2.91 -0.02 4.04 16 31 H 0.14 2.96 7.79 -2.91 -0.02 2.94 16 32 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 34 H 0.16 2.79 6.14 -2.91 -0.02 2.77 16 Total: -1.00 -69.79 301.57 6.21 -63.58 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 1.09 Total: 3.54 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 3.49 Total: -12.70 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -1.28 Total: -60.84 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: 1.03 Total: -34.33 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 1.88 Total: 40.74 kcal Total: -69.79 6.21 -63.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487898496.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.905 kcal (2) G-P(sol) polarization free energy of solvation -69.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds