Wall clock time and date at job start Tue Mar 31 2020 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47264 * 293.68731 * 3 2 1 5 5 C 1.36932 * 120.00107 * 95.67981 * 4 3 2 6 6 H 1.08005 * 119.99959 * 161.35395 * 5 4 3 7 7 C 1.38815 * 120.00146 * 341.35617 * 5 4 3 8 8 N 1.31622 * 119.99508 * 339.08518 * 7 5 4 9 9 Si 1.86797 * 120.00036 * 159.08233 * 7 5 4 10 10 H 1.48500 * 109.47109 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46967 * 119.99833 * 9 7 5 12 12 H 1.48495 * 109.47304 * 239.99984 * 9 7 5 13 13 C 1.46501 * 119.99632 * 275.67726 * 4 3 2 14 14 C 1.50702 * 109.46906 * 89.99935 * 13 4 3 15 15 C 1.33558 * 122.06592 * 94.99647 * 14 13 4 16 16 S 1.76256 * 108.25129 * 180.02562 * 15 14 13 17 17 C 1.76176 * 89.84990 * 0.02562 * 16 15 14 18 18 C 1.47861 * 125.47713 * 179.97438 * 17 16 15 19 19 C 1.46861 * 127.13833 * 359.73751 * 18 17 16 20 20 C 1.34316 * 106.01030 * 179.82936 * 19 18 17 21 21 O 1.34171 * 109.05047 * 0.43339 * 20 19 18 22 22 C 1.34029 * 110.79834 * 359.71140 * 21 20 19 23 23 N 1.30244 * 109.04702 * 359.74058 * 17 16 15 24 24 H 4.40644 * 5.51461 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47333 * 173.68706 * 3 2 1 26 26 H 1.09002 * 109.47250 * 53.68805 * 3 2 1 27 27 H 0.97005 * 119.99235 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47257 * 209.99459 * 13 4 3 29 29 H 1.08999 * 109.47371 * 330.00294 * 13 4 3 30 30 H 1.08000 * 125.87488 * 359.97438 * 15 14 13 31 31 H 1.07997 * 126.99310 * 359.97438 * 19 18 17 32 32 H 1.07996 * 125.47165 * 180.13880 * 20 19 18 33 33 H 1.08001 * 125.78466 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1345 -0.5540 1.2649 5 6 3.4740 -1.8781 1.3461 6 1 4.1029 -2.2259 2.1524 7 6 3.0099 -2.7734 0.3922 8 7 1.9494 -2.4762 -0.3284 9 14 3.8906 -4.4000 0.1312 10 1 5.0452 -4.4924 1.0605 11 1 2.9516 -5.5194 0.3964 12 1 4.3748 -4.4814 -1.2702 13 6 3.2599 0.3080 2.4428 14 6 1.9701 0.2849 3.2218 15 6 1.7805 -0.5398 4.2550 16 16 0.1601 -0.2640 4.8914 17 6 -0.1067 0.9712 3.6638 18 6 -1.3443 1.7632 3.4980 19 6 -2.5690 1.6733 4.3034 20 6 -3.4167 2.5806 3.7912 21 8 -2.8259 3.1963 2.7558 22 6 -1.5870 2.7222 2.5641 23 7 0.9633 1.0781 2.9288 24 1 -1.0500 0.0001 0.0002 25 1 3.0088 1.0222 -0.1130 26 1 3.0095 -0.6077 -0.8281 27 1 1.6249 -3.1020 -0.9948 28 1 4.0718 -0.0544 3.0735 29 1 3.4743 1.3284 2.1251 30 1 2.4965 -1.2536 4.6348 31 1 -2.7502 1.0137 5.1392 32 1 -4.4152 2.7789 4.1516 33 1 -0.8980 3.0469 1.7984 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491818895.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:10 Heat of formation + Delta-G solvation = 149.590286 kcal Electronic energy + Delta-G solvation = -19884.804088 eV Core-core repulsion = 16814.251672 eV Total energy + Delta-G solvation = -3070.552416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.30468 -38.97377 -35.87716 -33.31899 -31.55716 -31.42361 -30.11965 -28.77404 -26.38786 -25.94429 -24.56576 -21.98719 -21.56663 -20.35527 -18.48316 -17.99844 -17.44360 -16.57691 -16.25465 -15.92261 -15.14992 -14.96986 -14.22048 -13.98700 -13.59012 -13.22637 -13.12759 -12.90280 -12.78609 -12.43382 -11.97980 -11.53977 -11.43615 -11.07424 -10.85880 -10.56694 -10.26938 -10.13500 -9.95909 -9.12727 -8.99526 -8.85036 -8.79798 -8.55678 -8.32912 -7.68573 -7.06407 -5.83921 -3.25505 0.98060 1.88137 1.93225 2.33154 2.66084 3.09094 3.32799 3.40952 3.42786 3.71708 4.30855 4.35008 4.49120 4.63624 4.92018 5.03705 5.29870 5.36032 5.70526 5.76762 5.81129 5.88414 5.98367 6.04431 6.15283 6.33983 6.46914 6.58162 6.76366 6.89462 7.12079 7.23232 7.52618 7.69376 8.22006 8.43210 9.04718 9.37577 9.69347 10.16640 11.17728 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021881 B = 0.005261 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.349500 B = 5321.279754 C = 5790.996178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.085 4.085 3 C 0.270 3.730 4 N -0.569 5.569 5 C -0.265 4.265 6 H 0.077 0.923 7 C 0.006 3.994 8 N -0.879 5.879 9 Si 0.902 3.098 10 H -0.277 1.277 11 H -0.292 1.292 12 H -0.287 1.287 13 C 0.209 3.791 14 C 0.068 3.932 15 C -0.234 4.234 16 S 0.025 5.975 17 C 0.140 3.860 18 C -0.119 4.119 19 C -0.198 4.198 20 C -0.038 4.038 21 O -0.181 6.181 22 C 0.026 3.974 23 N -0.437 5.437 24 H 0.181 0.819 25 H 0.038 0.962 26 H 0.093 0.907 27 H 0.255 0.745 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.169 0.831 31 H 0.152 0.848 32 H 0.204 0.796 33 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.088 9.253 8.145 13.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 C -0.088 4.088 3 C 0.146 3.854 4 N -0.287 5.287 5 C -0.395 4.395 6 H 0.095 0.905 7 C -0.194 4.194 8 N -0.521 5.521 9 Si 0.732 3.268 10 H -0.202 1.202 11 H -0.219 1.219 12 H -0.214 1.214 13 C 0.079 3.921 14 C -0.066 4.066 15 C -0.374 4.374 16 S 0.279 5.721 17 C -0.136 4.136 18 C -0.124 4.124 19 C -0.218 4.218 20 C -0.105 4.105 21 O -0.077 6.077 22 C -0.047 4.047 23 N -0.152 5.152 24 H 0.199 0.801 25 H 0.056 0.944 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.186 0.814 31 H 0.170 0.830 32 H 0.221 0.779 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -6.744 9.242 8.244 14.102 hybrid contribution 0.523 -1.692 -0.359 1.807 sum -6.221 7.550 7.885 12.565 Atomic orbital electron populations 1.23886 0.95013 1.08184 1.04467 1.23890 0.94916 0.93548 0.96414 1.17808 0.83257 0.94829 0.89552 1.44464 1.73170 1.07229 1.03799 1.19294 1.24484 0.83791 1.11908 0.90534 1.25015 0.96102 0.97878 1.00435 1.70160 1.20495 1.36165 1.25293 0.86237 0.79246 0.83471 0.77893 1.20155 1.21894 1.21391 1.19797 0.88980 0.95372 0.87952 1.21584 0.98737 0.92620 0.93664 1.26540 0.98474 1.08396 1.03996 1.84455 1.14006 1.38029 1.35647 1.24567 0.94996 0.98157 0.95904 1.19113 0.92407 1.00587 1.00261 1.22773 0.92892 1.02949 1.03207 1.23790 0.99447 0.96864 0.90371 1.83892 1.25873 1.54296 1.43593 1.24316 0.84154 0.95993 1.00189 1.66438 0.99132 1.24726 1.24864 0.80126 0.94389 0.88943 0.93471 0.91411 0.92228 0.81358 0.83026 0.77895 0.76887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.10 19.25 29.55 0.57 -6.54 16 2 C -0.08 -2.11 10.60 -37.13 -0.39 -2.50 16 3 C 0.27 6.45 5.45 -6.83 -0.04 6.42 16 4 N -0.57 -13.68 2.49 -177.94 -0.44 -14.12 16 5 C -0.27 -6.91 9.65 -15.06 -0.15 -7.06 16 6 H 0.08 1.94 7.90 -52.48 -0.41 1.52 16 7 C 0.01 0.17 4.87 -17.43 -0.08 0.08 16 8 N -0.88 -24.91 9.47 55.49 0.53 -24.39 16 9 Si 0.90 21.19 29.60 -169.99 -5.03 16.16 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.21 4.27 6.11 -5.19 -0.03 4.24 16 14 C 0.07 1.41 5.97 -84.38 -0.50 0.90 16 15 C -0.23 -4.51 11.05 29.09 0.32 -4.19 16 16 S 0.02 0.42 23.33 -107.50 -2.51 -2.08 16 17 C 0.14 2.60 7.50 -14.29 -0.11 2.49 16 18 C -0.12 -1.88 6.32 -103.26 -0.65 -2.53 16 19 C -0.20 -2.52 11.05 -37.48 -0.41 -2.93 16 20 C -0.04 -0.41 12.04 29.35 0.35 -0.05 16 21 O -0.18 -2.29 10.54 6.80 0.07 -2.22 16 22 C 0.03 0.37 12.05 29.95 0.36 0.73 16 23 N -0.44 -8.91 9.92 -7.55 -0.07 -8.99 16 24 H 0.18 3.88 7.80 -54.09 -0.42 3.46 16 25 H 0.04 0.80 7.97 -51.93 -0.41 0.39 16 26 H 0.09 2.38 6.52 -51.93 -0.34 2.04 16 27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.07 1.26 7.97 -51.93 -0.41 0.85 16 29 H 0.06 1.12 7.95 -51.93 -0.41 0.71 16 30 H 0.17 2.98 8.06 -52.49 -0.42 2.56 16 31 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.20 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.21 2.83 8.06 -52.49 -0.42 2.41 16 LS Contribution 315.24 15.07 4.75 4.75 Total: -1.00 -31.26 315.24 -6.72 -37.98 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -3.24 Total: 3.85 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.77 Total: -10.94 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.01 Total: -47.49 kcal Atomic # 8 Polarization: -2.29 SS G_CDS: 0.07 Total: -2.22 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -2.51 Total: -2.08 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.26 -6.72 -37.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491818895.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.567 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds