Wall clock time and date at job start Tue Mar 31 2020 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47264 * 293.68731 * 3 2 1 5 5 C 1.36932 * 120.00107 * 95.67981 * 4 3 2 6 6 H 1.08005 * 119.99959 * 161.35395 * 5 4 3 7 7 C 1.38815 * 120.00146 * 341.35617 * 5 4 3 8 8 N 1.31622 * 119.99508 * 339.08518 * 7 5 4 9 9 Si 1.86797 * 120.00036 * 159.08233 * 7 5 4 10 10 H 1.48500 * 109.47109 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46967 * 119.99833 * 9 7 5 12 12 H 1.48495 * 109.47304 * 239.99984 * 9 7 5 13 13 C 1.46501 * 119.99632 * 275.67726 * 4 3 2 14 14 C 1.50702 * 109.46906 * 89.99935 * 13 4 3 15 15 C 1.33558 * 122.06592 * 94.99647 * 14 13 4 16 16 S 1.76256 * 108.25129 * 180.02562 * 15 14 13 17 17 C 1.76176 * 89.84990 * 0.02562 * 16 15 14 18 18 C 1.47861 * 125.47713 * 179.97438 * 17 16 15 19 19 C 1.46861 * 127.13833 * 359.73751 * 18 17 16 20 20 C 1.34316 * 106.01030 * 179.82936 * 19 18 17 21 21 O 1.34171 * 109.05047 * 0.43339 * 20 19 18 22 22 C 1.34029 * 110.79834 * 359.71140 * 21 20 19 23 23 N 1.30244 * 109.04702 * 359.74058 * 17 16 15 24 24 H 4.40644 * 5.51461 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47333 * 173.68706 * 3 2 1 26 26 H 1.09002 * 109.47250 * 53.68805 * 3 2 1 27 27 H 0.97005 * 119.99235 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47257 * 209.99459 * 13 4 3 29 29 H 1.08999 * 109.47371 * 330.00294 * 13 4 3 30 30 H 1.08000 * 125.87488 * 359.97438 * 15 14 13 31 31 H 1.07997 * 126.99310 * 359.97438 * 19 18 17 32 32 H 1.07996 * 125.47165 * 180.13880 * 20 19 18 33 33 H 1.08001 * 125.78466 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1345 -0.5540 1.2649 5 6 3.4740 -1.8781 1.3461 6 1 4.1029 -2.2259 2.1524 7 6 3.0099 -2.7734 0.3922 8 7 1.9494 -2.4762 -0.3284 9 14 3.8906 -4.4000 0.1312 10 1 5.0452 -4.4924 1.0605 11 1 2.9516 -5.5194 0.3964 12 1 4.3748 -4.4814 -1.2702 13 6 3.2599 0.3080 2.4428 14 6 1.9701 0.2849 3.2218 15 6 1.7805 -0.5398 4.2550 16 16 0.1601 -0.2640 4.8914 17 6 -0.1067 0.9712 3.6638 18 6 -1.3443 1.7632 3.4980 19 6 -2.5690 1.6733 4.3034 20 6 -3.4167 2.5806 3.7912 21 8 -2.8259 3.1963 2.7558 22 6 -1.5870 2.7222 2.5641 23 7 0.9633 1.0781 2.9288 24 1 -1.0500 0.0001 0.0002 25 1 3.0088 1.0222 -0.1130 26 1 3.0095 -0.6077 -0.8281 27 1 1.6249 -3.1020 -0.9948 28 1 4.0718 -0.0544 3.0735 29 1 3.4743 1.3284 2.1251 30 1 2.4965 -1.2536 4.6348 31 1 -2.7502 1.0137 5.1392 32 1 -4.4152 2.7789 4.1516 33 1 -0.8980 3.0469 1.7984 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491818895.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:10 Heat of formation + Delta-G solvation = 131.936866 kcal Electronic energy + Delta-G solvation = -19885.569598 eV Core-core repulsion = 16814.251672 eV Total energy + Delta-G solvation = -3071.317926 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.30746 -40.46277 -37.67346 -34.52619 -33.43641 -33.11742 -31.43151 -30.07211 -28.06297 -27.81749 -25.96715 -23.73426 -22.54525 -21.66030 -19.81806 -19.44684 -19.07444 -18.25663 -17.81221 -16.95394 -16.87352 -16.25664 -15.76053 -15.49960 -15.37130 -14.78266 -14.73931 -14.13114 -13.99879 -13.77964 -13.40704 -13.22264 -13.11450 -12.81595 -12.68832 -12.23705 -12.07853 -11.94470 -11.25952 -10.77520 -10.68786 -10.53938 -10.26488 -10.15127 -9.83951 -9.08878 -8.91831 -7.83345 -5.26774 -0.38432 0.48983 0.86999 0.94456 1.44335 1.47375 1.50966 1.58850 2.13342 2.24137 2.49285 2.58271 2.73242 3.12580 3.31410 3.90889 3.91861 3.97642 4.15218 4.30173 4.40633 4.50604 4.65018 4.82048 4.86535 4.99816 5.05905 5.12036 5.30476 5.38407 5.42395 5.65610 5.70177 6.12070 6.26940 6.97041 7.08560 7.49062 7.79242 8.23819 9.17183 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021881 B = 0.005261 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.349500 B = 5321.279754 C = 5790.996178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.103 4.103 3 C 0.272 3.728 4 N -0.582 5.582 5 C -0.264 4.264 6 H 0.081 0.919 7 C -0.044 4.044 8 N -0.911 5.911 9 Si 0.961 3.039 10 H -0.264 1.264 11 H -0.303 1.303 12 H -0.291 1.291 13 C 0.208 3.792 14 C 0.052 3.948 15 C -0.253 4.253 16 S 0.067 5.933 17 C 0.134 3.866 18 C -0.154 4.154 19 C -0.216 4.216 20 C -0.014 4.014 21 O -0.181 6.181 22 C 0.028 3.972 23 N -0.464 5.464 24 H 0.200 0.800 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.245 0.755 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.179 0.821 31 H 0.166 0.834 32 H 0.253 0.747 33 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.276 9.915 9.570 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 C -0.106 4.106 3 C 0.147 3.853 4 N -0.300 5.300 5 C -0.394 4.394 6 H 0.099 0.901 7 C -0.241 4.241 8 N -0.556 5.556 9 Si 0.790 3.210 10 H -0.188 1.188 11 H -0.231 1.231 12 H -0.218 1.218 13 C 0.079 3.921 14 C -0.082 4.082 15 C -0.393 4.393 16 S 0.322 5.678 17 C -0.141 4.141 18 C -0.159 4.159 19 C -0.237 4.237 20 C -0.080 4.080 21 O -0.076 6.076 22 C -0.045 4.045 23 N -0.179 5.179 24 H 0.217 0.783 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.196 0.804 31 H 0.183 0.817 32 H 0.269 0.731 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -7.916 9.922 9.714 15.983 hybrid contribution 0.773 -1.748 -0.659 2.022 sum -7.144 8.173 9.055 14.136 Atomic orbital electron populations 1.24397 0.95735 1.07850 1.04054 1.24252 0.95581 0.93900 0.96833 1.17753 0.83035 0.95485 0.89049 1.44496 1.73566 1.06902 1.05043 1.19567 1.23752 0.84654 1.11441 0.90092 1.25633 0.96870 1.00704 1.00880 1.70318 1.22127 1.36874 1.26241 0.85310 0.78274 0.79841 0.77560 1.18791 1.23123 1.21827 1.19872 0.89551 0.95433 0.87200 1.21544 0.98776 0.93388 0.94526 1.26784 1.00152 1.08231 1.04115 1.84202 1.11968 1.37049 1.34558 1.25104 0.95389 0.98162 0.95473 1.19386 0.92717 1.01567 1.02224 1.22997 0.92119 1.04512 1.04029 1.24698 1.00381 0.94631 0.88259 1.83928 1.25157 1.54268 1.44266 1.24369 0.84803 0.95517 0.99809 1.66439 0.99772 1.25672 1.26004 0.78304 0.92018 0.91402 0.94573 0.89929 0.91028 0.80354 0.81681 0.73119 0.76783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -14.45 19.25 74.32 1.43 -13.02 16 2 C -0.10 -5.15 10.60 31.13 0.33 -4.82 16 3 C 0.27 13.11 5.45 84.57 0.46 13.57 16 4 N -0.58 -27.92 2.49 -716.89 -1.78 -29.70 16 5 C -0.26 -13.74 9.65 84.03 0.81 -12.93 16 6 H 0.08 4.04 7.90 -2.91 -0.02 4.02 16 7 C -0.04 -2.38 4.87 84.86 0.41 -1.97 16 8 N -0.91 -52.61 9.47 21.65 0.21 -52.41 16 9 Si 0.96 44.11 29.60 68.60 2.03 46.14 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 12 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 13 C 0.21 8.39 6.11 85.63 0.52 8.91 16 14 C 0.05 2.11 5.97 41.55 0.25 2.36 16 15 C -0.25 -9.54 11.05 66.76 0.74 -8.80 16 16 S 0.07 2.23 23.33 -56.49 -1.32 0.91 16 17 C 0.13 4.87 7.50 87.48 0.66 5.53 16 18 C -0.15 -4.66 6.32 -18.98 -0.12 -4.78 16 19 C -0.22 -4.94 11.05 23.63 0.26 -4.68 16 20 C -0.01 -0.25 12.04 66.92 0.81 0.56 16 21 O -0.18 -4.09 10.54 1.40 0.01 -4.08 16 22 C 0.03 0.77 12.05 67.31 0.81 1.58 16 23 N -0.46 -18.72 9.92 -177.80 -1.76 -20.48 16 24 H 0.20 8.44 7.80 -4.42 -0.03 8.40 16 25 H 0.06 2.60 7.97 -2.39 -0.02 2.59 16 26 H 0.07 3.59 6.52 -2.39 -0.02 3.57 16 27 H 0.24 14.04 8.31 -92.70 -0.77 13.27 16 28 H 0.08 3.00 7.97 -2.39 -0.02 2.99 16 29 H 0.07 2.65 7.95 -2.39 -0.02 2.63 16 30 H 0.18 6.15 8.06 -2.91 -0.02 6.12 16 31 H 0.17 3.20 8.06 -2.91 -0.02 3.17 16 32 H 0.25 1.70 8.06 -2.91 -0.02 1.67 16 33 H 0.22 5.59 8.06 -2.91 -0.02 5.57 16 Total: -1.00 -67.02 315.24 5.88 -61.14 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 1.13 Total: 16.97 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 7.37 Total: -18.49 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -3.34 Total: -102.59 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: 0.01 Total: -4.08 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -1.32 Total: 0.91 kcal Total: -67.02 5.88 -61.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491818895.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.075 kcal (2) G-P(sol) polarization free energy of solvation -67.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds