Wall clock time and date at job start Tue Mar 31 2020 06:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81397 * 103.00120 * 2 1 4 4 C 1.50702 * 109.47094 * 179.97438 * 3 2 1 5 5 N 1.30071 * 126.20865 * 89.97493 * 4 3 2 6 6 N 1.28654 * 109.56671 * 180.02562 * 5 4 3 7 7 C 1.31150 * 109.30817 * 0.02562 * 6 5 4 8 8 S 1.76193 * 126.38150 * 180.02562 * 7 6 5 9 9 C 1.81002 * 100.00049 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.47004 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47233 * 299.99738 * 10 9 8 12 12 C 1.52996 * 109.47328 * 60.00207 * 10 9 8 13 13 C 1.50706 * 109.46735 * 180.02562 * 10 9 8 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46725 * 60.00093 * 17 15 13 19 19 H 1.48505 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47116 * 300.00069 * 17 15 13 21 21 O 1.34638 * 107.23679 * 0.25801 * 7 6 5 22 22 H 1.09007 * 109.47165 * 59.99545 * 1 2 3 23 23 H 1.08992 * 109.47743 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47181 * 300.00429 * 1 2 3 25 25 H 1.09002 * 109.47630 * 59.99805 * 3 2 1 26 26 H 1.09000 * 109.47297 * 299.99954 * 3 2 1 27 27 H 1.09002 * 109.47115 * 60.00094 * 9 8 7 28 28 H 1.09001 * 109.46925 * 300.00251 * 9 8 7 29 29 H 1.09000 * 109.46986 * 60.00203 * 11 10 9 30 30 H 1.08993 * 109.47662 * 180.02562 * 11 10 9 31 31 H 1.09002 * 109.47075 * 300.00932 * 11 10 9 32 32 H 1.08992 * 109.47554 * 59.99639 * 12 10 9 33 33 H 1.09004 * 109.47108 * 179.97438 * 12 10 9 34 34 H 1.09000 * 109.46870 * 299.99783 * 12 10 9 35 35 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7195 1.9373 0.0006 5 7 4.4834 2.0233 -1.0485 6 7 5.7081 2.1618 -0.6796 7 6 5.7682 2.1685 0.6305 8 16 7.2240 2.3338 1.6091 9 6 8.4674 2.4760 0.3014 10 6 9.8533 2.6329 0.9303 11 6 9.8799 3.8925 1.7984 12 6 10.1618 1.4099 1.7964 13 6 10.8884 2.7519 -0.1586 14 1 10.5878 2.7186 -1.1953 15 6 12.2191 2.9034 0.1689 16 7 12.5851 2.9445 1.4314 17 14 13.5022 3.0502 -1.1807 18 1 13.2023 4.2369 -2.0217 19 1 14.8473 3.2039 -0.5703 20 1 13.4770 1.8275 -2.0229 21 8 4.5108 2.0203 1.0883 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0275 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8031 2.2372 0.8900 26 1 1.8031 2.2371 -0.8900 27 1 8.2474 3.3470 -0.3159 28 1 8.4487 1.5785 -0.3168 29 1 9.1311 3.8069 2.5859 30 1 10.8673 4.0045 2.2461 31 1 9.6600 4.7637 1.1814 32 1 10.1428 0.5126 1.1780 33 1 11.1494 1.5215 2.2441 34 1 9.4130 1.3243 2.5839 35 1 13.5212 3.0514 1.6619 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517246901.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:22 Heat of formation + Delta-G solvation = 33.237134 kcal Electronic energy + Delta-G solvation = -17984.174146 eV Core-core repulsion = 15044.020229 eV Total energy + Delta-G solvation = -2940.153916 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.98185 -36.22544 -35.97752 -33.09096 -31.63660 -29.56872 -28.59243 -26.32540 -25.80303 -25.20894 -23.90342 -22.60656 -19.32198 -18.16695 -17.56106 -16.80434 -16.20020 -16.08254 -15.18515 -14.79400 -14.50617 -14.31222 -14.08825 -13.48148 -13.36545 -13.01302 -12.86939 -12.38414 -12.33759 -11.78850 -11.57484 -11.39027 -11.22612 -10.93321 -10.79912 -10.66842 -10.43125 -10.35339 -10.09149 -10.03117 -9.66393 -9.59922 -8.80120 -8.44997 -8.12646 -7.48109 -6.07425 -4.18778 0.56150 0.91342 1.50424 2.02142 2.49657 2.52526 2.78230 3.28257 3.32740 3.36654 3.95834 4.36112 4.51474 4.69588 4.71481 4.81450 5.08616 5.19271 5.26464 5.29226 5.49497 5.85344 5.94909 6.39082 6.68681 6.78447 6.88788 6.92615 7.24759 7.47070 7.64590 7.92552 8.04632 8.27471 8.28760 8.80319 9.47188 10.93931 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.040893 B = 0.003149 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.548065 B = 8889.262154 C = 9174.425674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.224 6.224 3 C 0.010 3.990 4 C 0.147 3.853 5 N -0.251 5.251 6 N -0.295 5.295 7 C 0.151 3.849 8 S 0.056 5.944 9 C -0.083 4.083 10 C 0.083 3.917 11 C -0.138 4.138 12 C -0.139 4.139 13 C -0.507 4.507 14 H 0.060 0.940 15 C 0.069 3.931 16 N -0.884 5.884 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 O -0.206 6.206 22 H 0.081 0.919 23 H 0.107 0.893 24 H 0.080 0.920 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.016 0.984 30 H 0.090 0.910 31 H 0.031 0.969 32 H 0.032 0.968 33 H 0.090 0.910 34 H 0.016 0.984 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.102 -2.227 1.198 20.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S 0.000 6.000 3 C -0.138 4.138 4 C -0.070 4.070 5 N -0.101 5.101 6 N -0.148 5.148 7 C -0.165 4.165 8 S 0.288 5.712 9 C -0.231 4.231 10 C 0.080 3.920 11 C -0.197 4.197 12 C -0.197 4.197 13 C -0.547 4.547 14 H 0.078 0.922 15 C -0.133 4.133 16 N -0.522 5.522 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 O -0.088 6.088 22 H 0.100 0.900 23 H 0.125 0.875 24 H 0.099 0.901 25 H 0.132 0.868 26 H 0.144 0.856 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.035 0.965 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.109 0.891 34 H 0.035 0.965 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.774 -3.012 1.278 19.057 hybrid contribution -0.761 1.020 -0.893 1.554 sum -19.535 -1.993 0.386 19.640 Atomic orbital electron populations 1.23475 0.93512 1.07113 1.05349 1.87520 1.07486 1.06947 1.98077 1.21501 0.85853 0.98196 1.08294 1.26480 0.95628 1.04515 0.80336 1.74084 0.96617 1.13947 1.25406 1.75026 1.11338 1.20656 1.07773 1.30929 0.89950 1.00436 0.95181 1.86326 0.87630 1.87439 1.09791 1.24449 0.95567 1.05931 0.97199 1.18099 0.86102 0.93506 0.94296 1.21965 1.02360 0.97572 0.97755 1.21964 1.02638 0.97293 0.97777 1.20931 0.90767 1.50879 0.92080 0.92220 1.24873 0.98270 0.94636 0.95565 1.69785 1.16949 1.49563 1.15949 0.86580 0.80343 0.78789 0.81864 1.20201 1.21233 1.20178 1.84966 1.16662 1.70118 1.37008 0.89953 0.87458 0.90065 0.86809 0.85558 0.89312 0.89296 0.96540 0.89105 0.94937 0.94908 0.89118 0.96518 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 10.76 101.05 1.09 0.42 16 2 S -0.22 -2.27 22.36 -107.50 -2.40 -4.67 16 3 C 0.01 0.10 6.57 36.01 0.24 0.33 16 4 C 0.15 2.17 7.74 -13.02 -0.10 2.07 16 5 N -0.25 -4.47 12.20 32.59 0.40 -4.07 16 6 N -0.30 -5.77 11.63 30.29 0.35 -5.42 16 7 C 0.15 2.75 8.53 52.47 0.45 3.20 16 8 S 0.06 1.01 19.36 -107.50 -2.08 -1.08 16 9 C -0.08 -1.70 4.17 37.16 0.15 -1.55 16 10 C 0.08 1.89 0.52 -155.66 -0.08 1.81 16 11 C -0.14 -3.11 8.01 37.16 0.30 -2.82 16 12 C -0.14 -3.13 8.01 37.16 0.30 -2.84 16 13 C -0.51 -12.99 8.01 -34.44 -0.28 -13.27 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 15 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 16 N -0.88 -23.24 9.35 55.43 0.52 -22.72 16 17 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 O -0.21 -3.41 10.90 3.51 0.04 -3.37 16 22 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 23 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.08 0.33 8.14 -51.92 -0.42 -0.10 16 25 H 0.11 0.79 8.14 -51.92 -0.42 0.37 16 26 H 0.13 0.94 8.14 -51.92 -0.42 0.51 16 27 H 0.09 1.83 8.14 -51.92 -0.42 1.41 16 28 H 0.09 1.85 8.14 -51.92 -0.42 1.43 16 29 H 0.02 0.32 6.91 -51.93 -0.36 -0.03 16 30 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 34 H 0.02 0.33 6.91 -51.93 -0.36 -0.03 16 35 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -28.42 319.42 -6.11 -34.53 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -4.69 Total: -2.48 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 1.97 Total: -10.94 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 1.27 Total: -32.21 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: 0.04 Total: -3.37 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: -1.27 SS G_CDS: -4.48 Total: -5.75 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.42 -6.11 -34.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517246901.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.763 kcal (2) G-P(sol) polarization free energy of solvation -28.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds