Wall clock time and date at job start Tue Mar 31 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81397 * 103.00120 * 2 1 4 4 C 1.50702 * 109.47094 * 179.97438 * 3 2 1 5 5 N 1.30071 * 126.20865 * 89.97493 * 4 3 2 6 6 N 1.28654 * 109.56671 * 180.02562 * 5 4 3 7 7 C 1.31150 * 109.30817 * 0.02562 * 6 5 4 8 8 S 1.76193 * 126.38150 * 180.02562 * 7 6 5 9 9 C 1.81002 * 100.00049 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.47004 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47233 * 299.99738 * 10 9 8 12 12 C 1.52996 * 109.47328 * 60.00207 * 10 9 8 13 13 C 1.50706 * 109.46735 * 180.02562 * 10 9 8 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46725 * 60.00093 * 17 15 13 19 19 H 1.48505 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47116 * 300.00069 * 17 15 13 21 21 O 1.34638 * 107.23679 * 0.25801 * 7 6 5 22 22 H 1.09007 * 109.47165 * 59.99545 * 1 2 3 23 23 H 1.08992 * 109.47743 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47181 * 300.00429 * 1 2 3 25 25 H 1.09002 * 109.47630 * 59.99805 * 3 2 1 26 26 H 1.09000 * 109.47297 * 299.99954 * 3 2 1 27 27 H 1.09002 * 109.47115 * 60.00094 * 9 8 7 28 28 H 1.09001 * 109.46925 * 300.00251 * 9 8 7 29 29 H 1.09000 * 109.46986 * 60.00203 * 11 10 9 30 30 H 1.08993 * 109.47662 * 180.02562 * 11 10 9 31 31 H 1.09002 * 109.47075 * 300.00932 * 11 10 9 32 32 H 1.08992 * 109.47554 * 59.99639 * 12 10 9 33 33 H 1.09004 * 109.47108 * 179.97438 * 12 10 9 34 34 H 1.09000 * 109.46870 * 299.99783 * 12 10 9 35 35 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7195 1.9373 0.0006 5 7 4.4834 2.0233 -1.0485 6 7 5.7081 2.1618 -0.6796 7 6 5.7682 2.1685 0.6305 8 16 7.2240 2.3338 1.6091 9 6 8.4674 2.4760 0.3014 10 6 9.8533 2.6329 0.9303 11 6 9.8799 3.8925 1.7984 12 6 10.1618 1.4099 1.7964 13 6 10.8884 2.7519 -0.1586 14 1 10.5878 2.7186 -1.1953 15 6 12.2191 2.9034 0.1689 16 7 12.5851 2.9445 1.4314 17 14 13.5022 3.0502 -1.1807 18 1 13.2023 4.2369 -2.0217 19 1 14.8473 3.2039 -0.5703 20 1 13.4770 1.8275 -2.0229 21 8 4.5108 2.0203 1.0883 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0275 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8031 2.2372 0.8900 26 1 1.8031 2.2371 -0.8900 27 1 8.2474 3.3470 -0.3159 28 1 8.4487 1.5785 -0.3168 29 1 9.1311 3.8069 2.5859 30 1 10.8673 4.0045 2.2461 31 1 9.6600 4.7637 1.1814 32 1 10.1428 0.5126 1.1780 33 1 11.1494 1.5215 2.2441 34 1 9.4130 1.3243 2.5839 35 1 13.5212 3.0514 1.6619 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517246901.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:21 Heat of formation + Delta-G solvation = 14.019495 kcal Electronic energy + Delta-G solvation = -17985.007485 eV Core-core repulsion = 15044.020229 eV Total energy + Delta-G solvation = -2940.987256 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.29782 -37.98752 -37.37739 -34.18658 -33.57352 -30.27136 -29.45967 -27.96952 -27.62784 -27.17682 -25.26638 -23.82624 -21.07218 -19.60732 -18.81068 -17.99616 -17.86952 -17.29329 -16.70726 -16.17609 -15.79063 -15.20035 -15.08077 -14.85629 -14.68883 -14.15731 -13.82390 -13.70854 -13.56415 -13.31824 -13.22184 -13.15312 -12.73315 -12.71797 -12.47617 -12.28095 -12.11747 -11.78038 -11.68109 -11.47359 -11.41270 -11.03176 -10.64537 -10.40222 -8.91220 -8.86674 -8.03280 -6.20031 -0.53650 -0.43674 0.47752 0.98181 1.24066 1.42940 1.45858 1.47414 1.53818 1.62891 2.46452 2.92444 3.20677 3.62800 3.73479 3.98556 4.15562 4.16352 4.21931 4.37325 4.38688 4.44232 4.65838 4.91786 4.92802 4.98627 5.07894 5.14115 5.41407 5.61122 5.66667 6.07397 6.15363 6.38060 6.82768 6.95294 7.47790 8.95883 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.040893 B = 0.003149 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.548065 B = 8889.262154 C = 9174.425674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 S -0.295 6.295 3 C 0.017 3.983 4 C 0.171 3.829 5 N -0.287 5.287 6 N -0.321 5.321 7 C 0.137 3.863 8 S 0.088 5.912 9 C -0.080 4.080 10 C 0.076 3.924 11 C -0.130 4.130 12 C -0.130 4.130 13 C -0.526 4.526 14 H 0.050 0.950 15 C 0.030 3.970 16 N -0.900 5.900 17 Si 0.947 3.053 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.277 1.277 21 O -0.207 6.207 22 H 0.098 0.902 23 H 0.116 0.884 24 H 0.099 0.901 25 H 0.146 0.854 26 H 0.151 0.849 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.068 0.932 34 H 0.037 0.963 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.528 -2.168 1.462 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 S -0.071 6.071 3 C -0.131 4.131 4 C -0.046 4.046 5 N -0.134 5.134 6 N -0.173 5.173 7 C -0.180 4.180 8 S 0.320 5.680 9 C -0.228 4.228 10 C 0.074 3.926 11 C -0.188 4.188 12 C -0.189 4.189 13 C -0.566 4.566 14 H 0.069 0.931 15 C -0.170 4.170 16 N -0.538 5.538 17 Si 0.774 3.226 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.202 1.202 21 O -0.089 6.089 22 H 0.117 0.883 23 H 0.135 0.865 24 H 0.118 0.882 25 H 0.164 0.836 26 H 0.169 0.831 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.214 -2.955 1.524 21.473 hybrid contribution -0.237 0.950 -0.974 1.381 sum -21.450 -2.005 0.550 21.551 Atomic orbital electron populations 1.23562 0.88338 1.08253 1.07092 1.87789 1.13145 1.07867 1.98344 1.21841 0.82167 0.97982 1.11101 1.27553 0.97287 1.00603 0.79131 1.74032 0.96401 1.16383 1.26582 1.74957 1.12670 1.21145 1.08487 1.30800 0.90626 1.01539 0.94997 1.85979 0.86612 1.87893 1.07550 1.24079 0.95688 1.05215 0.97862 1.18067 0.86984 0.93745 0.93851 1.21828 1.01635 0.97279 0.98065 1.21833 1.01961 0.96986 0.98083 1.21221 0.91916 1.50962 0.92479 0.93136 1.25460 0.99758 0.94606 0.97194 1.69895 1.17074 1.49882 1.16965 0.85783 0.78524 0.78514 0.79801 1.20128 1.20862 1.20204 1.84975 1.16190 1.70121 1.37570 0.88325 0.86544 0.88191 0.83576 0.83111 0.89967 0.90210 0.94439 0.91382 0.95185 0.95321 0.91362 0.94462 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 10.76 113.37 1.22 0.49 16 2 S -0.29 -5.36 22.36 -56.49 -1.26 -6.62 16 3 C 0.02 0.28 6.57 71.24 0.47 0.74 16 4 C 0.17 4.78 7.74 88.37 0.68 5.46 16 5 N -0.29 -10.00 12.20 -165.24 -2.02 -12.02 16 6 N -0.32 -12.49 11.63 -172.08 -2.00 -14.49 16 7 C 0.14 4.92 8.53 130.34 1.11 6.03 16 8 S 0.09 3.08 19.36 -56.49 -1.09 1.99 16 9 C -0.08 -3.28 4.17 71.98 0.30 -2.98 16 10 C 0.08 3.50 0.52 -52.93 -0.03 3.47 16 11 C -0.13 -5.83 8.01 71.98 0.58 -5.25 16 12 C -0.13 -5.90 8.01 71.98 0.58 -5.33 16 13 C -0.53 -27.33 8.01 25.60 0.21 -27.13 16 14 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 15 C 0.03 1.57 5.15 84.66 0.44 2.00 16 16 N -0.90 -47.74 9.35 21.45 0.20 -47.54 16 17 Si 0.95 42.16 29.54 68.60 2.03 44.19 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 21 O -0.21 -6.55 10.90 -10.35 -0.11 -6.67 16 22 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 23 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 25 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 28 H 0.08 3.37 8.14 -2.39 -0.02 3.36 16 29 H 0.04 1.48 6.91 -2.39 -0.02 1.46 16 30 H 0.07 3.38 6.07 -2.39 -0.01 3.37 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 3.41 6.07 -2.38 -0.01 3.39 16 34 H 0.04 1.48 6.91 -2.39 -0.02 1.47 16 35 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 Total: -1.00 -61.90 319.42 2.38 -59.52 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.09 Total: 4.12 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 5.55 Total: -22.48 kcal Atomic # 7 Polarization: -70.23 SS G_CDS: -3.82 Total: -74.05 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.11 Total: -6.67 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -2.36 Total: -4.63 kcal Total: -61.90 2.38 -59.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517246901.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.539 kcal (2) G-P(sol) polarization free energy of solvation -61.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds