Wall clock time and date at job start Tue Mar 31 2020 05:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86796 * 119.99997 * 2 1 4 4 H 1.48503 * 109.46987 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46958 * 299.99739 * 3 2 1 6 6 H 1.48500 * 109.47291 * 59.99988 * 3 2 1 7 7 C 1.40034 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99417 * 170.15844 * 7 2 1 9 9 C 1.41538 * 120.00277 * 350.15844 * 7 2 1 10 10 C 1.41166 * 120.99699 * 153.73441 * 9 7 2 11 11 C 1.37600 * 119.01609 * 180.02562 * 10 9 7 12 12 N 1.32080 * 121.10507 * 0.02562 * 11 10 9 13 13 C 1.32465 * 122.23572 * 359.66074 * 12 11 10 14 14 N 1.39466 * 119.58557 * 180.33921 * 13 12 11 15 15 C 1.34776 * 119.99787 * 5.65730 * 14 13 12 16 16 O 1.21281 * 120.00058 * 5.07422 * 15 14 13 17 17 C 1.50700 * 120.00292 * 185.07950 * 15 14 13 18 18 C 1.50698 * 109.47253 * 179.97438 * 17 15 14 19 19 C 1.38424 * 122.53805 * 269.73490 * 18 17 15 20 20 C 1.33397 * 114.91846 * 179.76292 * 19 18 17 21 21 S 1.75883 * 109.59180 * 0.47726 * 20 19 18 22 22 C 1.33390 * 122.53679 * 90.02610 * 18 17 15 23 23 C 1.38602 * 120.83846 * 0.62986 * 13 12 11 24 24 H 0.96998 * 119.99806 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.49511 * 359.97438 * 10 9 7 26 26 H 1.07994 * 119.44290 * 180.02562 * 11 10 9 27 27 H 0.96998 * 120.00713 * 185.64986 * 14 13 12 28 28 H 1.09003 * 109.46637 * 299.99643 * 17 15 14 29 29 H 1.09003 * 109.47110 * 59.99152 * 17 15 14 30 30 H 1.07998 * 122.54242 * 359.97438 * 19 18 17 31 31 H 1.07997 * 125.20256 * 180.21023 * 20 19 18 32 32 H 1.07998 * 125.20801 * 0.02562 * 22 18 17 33 33 H 1.08003 * 120.60559 * 179.68123 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 -0.0006 5 1 1.8827 2.3964 -1.2126 6 1 1.8827 2.3964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0756 -1.2196 -0.1593 9 6 1.3155 -2.4294 0.2106 10 6 1.8136 -3.6469 -0.3016 11 6 1.1074 -4.8056 -0.0736 12 7 -0.0213 -4.7930 0.6122 13 6 -0.5278 -3.6788 1.1189 14 7 -1.7203 -3.7304 1.8403 15 6 -2.2902 -4.9202 2.1160 16 8 -1.7208 -5.9488 1.8182 17 6 -3.6348 -4.9726 2.7945 18 6 -4.0450 -6.4099 2.9864 19 6 -4.7782 -7.1074 2.0420 20 6 -5.0534 -8.3719 2.3658 21 16 -4.3779 -8.7359 3.9484 22 6 -3.7338 -7.1046 4.0818 23 6 0.1091 -2.4615 0.9361 24 1 -0.4850 0.8400 -0.0004 25 1 2.7349 -3.6685 -0.8648 26 1 1.4824 -5.7410 -0.4619 27 1 -2.1396 -2.9100 2.1436 28 1 -3.5716 -4.4797 3.7646 29 1 -4.3740 -4.4636 2.1758 30 1 -5.1000 -6.6627 1.1119 31 1 -5.6099 -9.0647 1.7520 32 1 -3.1727 -6.7236 4.9223 33 1 -0.3099 -1.5546 1.3466 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532181224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:33 Heat of formation + Delta-G solvation = 34.985896 kcal Electronic energy + Delta-G solvation = -19187.325484 eV Core-core repulsion = 16111.803448 eV Total energy + Delta-G solvation = -3075.522036 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.75237 -38.33230 -37.19175 -34.29350 -33.69571 -31.24255 -30.49839 -28.89767 -27.52475 -25.99862 -23.43400 -21.98658 -21.54856 -19.76142 -18.66944 -17.73631 -17.50574 -16.81708 -15.83010 -15.32911 -15.12029 -14.64373 -14.19980 -14.02480 -13.52574 -13.06079 -13.01977 -12.90072 -12.61520 -12.42793 -12.29899 -12.10320 -11.57424 -11.40093 -11.19715 -10.92372 -10.77139 -10.28600 -10.12415 -9.73387 -9.42182 -9.35791 -8.74002 -8.33877 -7.99174 -7.72389 -7.04019 -6.75497 -4.64008 1.06357 1.70754 2.00923 2.55668 2.70907 2.77250 3.00936 3.06355 3.18894 3.48084 3.79810 3.84699 4.68021 4.85244 4.95967 5.20754 5.30762 5.41943 5.52869 5.66825 5.68789 6.00585 6.06704 6.41428 6.50337 6.58597 6.65506 6.79820 6.94958 7.12240 7.38312 7.46800 7.78582 7.95278 8.21784 8.42991 8.69953 8.74769 8.91508 9.68398 10.08414 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.036752 B = 0.003262 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.670914 B = 8582.119989 C = 9040.205418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.141 3.859 10 C -0.282 4.282 11 C 0.117 3.883 12 N -0.553 5.553 13 C 0.335 3.665 14 N -0.661 5.661 15 C 0.498 3.502 16 O -0.473 6.473 17 C -0.084 4.084 18 C -0.078 4.078 19 C -0.117 4.117 20 C -0.214 4.214 21 S 0.083 5.917 22 C -0.198 4.198 23 C -0.239 4.239 24 H 0.280 0.720 25 H 0.102 0.898 26 H 0.123 0.877 27 H 0.408 0.592 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.139 0.861 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.197 -5.929 6.736 13.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.486 4.486 8 H 0.100 0.900 9 C 0.133 3.867 10 C -0.306 4.306 11 C -0.037 4.037 12 N -0.272 5.272 13 C 0.111 3.889 14 N -0.307 5.307 15 C 0.282 3.718 16 O -0.342 6.342 17 C -0.127 4.127 18 C -0.090 4.090 19 C -0.147 4.147 20 C -0.349 4.349 21 S 0.346 5.654 22 C -0.333 4.333 23 C -0.265 4.265 24 H 0.091 0.909 25 H 0.120 0.880 26 H 0.141 0.859 27 H 0.243 0.757 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.156 0.844 31 H 0.180 0.820 32 H 0.179 0.821 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.490 -8.681 7.599 15.593 hybrid contribution 0.599 3.319 -1.055 3.534 sum -9.891 -5.362 6.545 13.016 Atomic orbital electron populations 1.69749 1.07561 1.29054 1.35829 1.25948 0.94884 1.01446 0.92013 0.86157 0.80844 0.80533 0.78585 1.18369 1.19888 1.19688 1.19617 0.95866 0.90006 1.43082 0.90042 1.17594 0.90385 0.92270 0.86454 1.21930 1.04147 0.94426 1.10116 1.21755 0.90611 0.96519 0.94844 1.67184 1.14948 1.28115 1.16959 1.18220 0.86617 0.90884 0.93212 1.43467 1.23526 1.08994 1.54718 1.20515 0.86878 0.84102 0.80340 1.90791 1.62564 1.32555 1.48333 1.20424 0.95838 0.93814 1.02614 1.18350 1.00204 0.96422 0.94054 1.20043 1.00260 0.94036 1.00405 1.25470 1.08805 1.00266 1.00397 1.84083 1.52397 1.12933 1.16010 1.25367 1.07669 0.96728 1.03561 1.21680 1.00954 0.95557 1.08263 0.90887 0.87985 0.85937 0.75747 0.88267 0.88047 0.84355 0.82036 0.82073 0.84928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.36 10.70 55.55 0.59 -18.77 16 2 C 0.07 1.79 5.31 -17.34 -0.09 1.70 16 3 Si 0.91 17.84 29.57 -169.99 -5.03 12.82 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.45 -11.64 9.14 -37.65 -0.34 -11.98 16 8 H 0.08 2.01 7.87 -52.49 -0.41 1.59 16 9 C 0.14 3.71 5.60 -106.55 -0.60 3.11 16 10 C -0.28 -6.96 9.90 -38.70 -0.38 -7.35 16 11 C 0.12 2.84 11.15 -17.68 -0.20 2.64 16 12 N -0.55 -14.21 7.89 -12.52 -0.10 -14.30 16 13 C 0.34 8.11 7.40 -154.71 -1.15 6.97 16 14 N -0.66 -12.68 5.39 -11.49 -0.06 -12.75 16 15 C 0.50 9.17 7.77 -10.99 -0.09 9.08 16 16 O -0.47 -10.89 14.33 5.56 0.08 -10.81 16 17 C -0.08 -1.06 5.96 -29.04 -0.17 -1.24 16 18 C -0.08 -1.05 4.29 -106.25 -0.46 -1.51 16 19 C -0.12 -1.51 9.98 -41.21 -0.41 -1.92 16 20 C -0.21 -2.50 11.23 29.04 0.33 -2.17 16 21 S 0.08 0.95 23.34 -107.50 -2.51 -1.56 16 22 C -0.20 -2.53 10.98 29.04 0.32 -2.21 16 23 C -0.24 -6.03 8.61 -38.47 -0.33 -6.36 16 24 H 0.28 6.15 8.29 -40.82 -0.34 5.81 16 25 H 0.10 2.31 8.06 -52.49 -0.42 1.88 16 26 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 27 H 0.41 6.30 8.70 -40.82 -0.36 5.94 16 28 H 0.10 0.99 8.12 -51.93 -0.42 0.56 16 29 H 0.10 1.05 8.13 -51.93 -0.42 0.63 16 30 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.13 3.31 6.11 -52.48 -0.32 2.99 16 LS Contribution 307.36 15.07 4.63 4.63 Total: -1.00 -31.92 307.36 -9.14 -41.06 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -3.18 Total: 10.91 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -3.57 Total: -11.23 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.43 Total: -45.82 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.92 -9.14 -41.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532181224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.046 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds