Wall clock time and date at job start Tue Mar 31 2020 05:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86796 * 119.99997 * 2 1 4 4 H 1.48503 * 109.46987 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46958 * 299.99739 * 3 2 1 6 6 H 1.48500 * 109.47291 * 59.99988 * 3 2 1 7 7 C 1.40034 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99417 * 170.15844 * 7 2 1 9 9 C 1.41538 * 120.00277 * 350.15844 * 7 2 1 10 10 C 1.41166 * 120.99699 * 153.73441 * 9 7 2 11 11 C 1.37600 * 119.01609 * 180.02562 * 10 9 7 12 12 N 1.32080 * 121.10507 * 0.02562 * 11 10 9 13 13 C 1.32465 * 122.23572 * 359.66074 * 12 11 10 14 14 N 1.39466 * 119.58557 * 180.33921 * 13 12 11 15 15 C 1.34776 * 119.99787 * 5.65730 * 14 13 12 16 16 O 1.21281 * 120.00058 * 5.07422 * 15 14 13 17 17 C 1.50700 * 120.00292 * 185.07950 * 15 14 13 18 18 C 1.50698 * 109.47253 * 179.97438 * 17 15 14 19 19 C 1.38424 * 122.53805 * 269.73490 * 18 17 15 20 20 C 1.33397 * 114.91846 * 179.76292 * 19 18 17 21 21 S 1.75883 * 109.59180 * 0.47726 * 20 19 18 22 22 C 1.33390 * 122.53679 * 90.02610 * 18 17 15 23 23 C 1.38602 * 120.83846 * 0.62986 * 13 12 11 24 24 H 0.96998 * 119.99806 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.49511 * 359.97438 * 10 9 7 26 26 H 1.07994 * 119.44290 * 180.02562 * 11 10 9 27 27 H 0.96998 * 120.00713 * 185.64986 * 14 13 12 28 28 H 1.09003 * 109.46637 * 299.99643 * 17 15 14 29 29 H 1.09003 * 109.47110 * 59.99152 * 17 15 14 30 30 H 1.07998 * 122.54242 * 359.97438 * 19 18 17 31 31 H 1.07997 * 125.20256 * 180.21023 * 20 19 18 32 32 H 1.07998 * 125.20801 * 0.02562 * 22 18 17 33 33 H 1.08003 * 120.60559 * 179.68123 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 -0.0006 5 1 1.8827 2.3964 -1.2126 6 1 1.8827 2.3964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0756 -1.2196 -0.1593 9 6 1.3155 -2.4294 0.2106 10 6 1.8136 -3.6469 -0.3016 11 6 1.1074 -4.8056 -0.0736 12 7 -0.0213 -4.7930 0.6122 13 6 -0.5278 -3.6788 1.1189 14 7 -1.7203 -3.7304 1.8403 15 6 -2.2902 -4.9202 2.1160 16 8 -1.7208 -5.9488 1.8182 17 6 -3.6348 -4.9726 2.7945 18 6 -4.0450 -6.4099 2.9864 19 6 -4.7782 -7.1074 2.0420 20 6 -5.0534 -8.3719 2.3658 21 16 -4.3779 -8.7359 3.9484 22 6 -3.7338 -7.1046 4.0818 23 6 0.1091 -2.4615 0.9361 24 1 -0.4850 0.8400 -0.0004 25 1 2.7349 -3.6685 -0.8648 26 1 1.4824 -5.7410 -0.4619 27 1 -2.1396 -2.9100 2.1436 28 1 -3.5716 -4.4797 3.7646 29 1 -4.3740 -4.4636 2.1758 30 1 -5.1000 -6.6627 1.1119 31 1 -5.6099 -9.0647 1.7520 32 1 -3.1727 -6.7236 4.9223 33 1 -0.3099 -1.5546 1.3466 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532181224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:32 Heat of formation + Delta-G solvation = 16.403256 kcal Electronic energy + Delta-G solvation = -19188.131287 eV Core-core repulsion = 16111.803448 eV Total energy + Delta-G solvation = -3076.327840 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.28541 -39.84118 -38.48802 -36.08187 -35.41943 -32.55809 -32.18851 -30.44158 -28.73371 -27.89728 -24.56189 -23.82391 -23.11178 -21.36322 -19.69886 -19.41399 -18.65413 -18.20482 -17.45877 -16.96637 -16.39521 -16.04814 -15.95276 -15.73367 -15.05211 -14.60465 -14.43099 -14.32422 -13.91095 -13.70538 -13.52812 -13.16687 -13.06272 -12.86410 -12.71092 -12.54085 -12.09136 -11.86402 -11.68544 -11.46392 -11.17493 -10.96293 -9.92526 -9.69875 -9.58710 -9.24687 -8.85664 -8.57047 -6.57564 0.12464 0.75810 0.80515 1.00257 1.08810 1.42245 1.54503 1.56606 1.68095 1.93948 2.21355 2.38798 2.83666 3.74472 3.77741 3.94588 4.06777 4.31045 4.41146 4.54319 4.62771 4.75251 4.78719 4.87942 4.93160 5.11341 5.13807 5.25346 5.48079 5.49417 5.55922 5.66957 5.93716 6.17104 6.50687 6.64022 6.80301 6.84921 7.37628 7.85551 8.29949 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.036752 B = 0.003262 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.670914 B = 8582.119989 C = 9040.205418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.037 3.963 3 Si 0.990 3.010 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.484 4.484 8 H 0.081 0.919 9 C 0.112 3.888 10 C -0.297 4.297 11 C 0.111 3.889 12 N -0.578 5.578 13 C 0.333 3.667 14 N -0.654 5.654 15 C 0.496 3.504 16 O -0.522 6.522 17 C -0.070 4.070 18 C -0.097 4.097 19 C -0.139 4.139 20 C -0.216 4.216 21 S 0.099 5.901 22 C -0.213 4.213 23 C -0.256 4.256 24 H 0.292 0.708 25 H 0.114 0.886 26 H 0.147 0.853 27 H 0.424 0.576 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.145 0.855 31 H 0.185 0.815 32 H 0.172 0.828 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.087 -5.066 7.310 14.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.179 4.179 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.515 4.515 8 H 0.099 0.901 9 C 0.104 3.896 10 C -0.321 4.321 11 C -0.043 4.043 12 N -0.298 5.298 13 C 0.106 3.894 14 N -0.302 5.302 15 C 0.283 3.717 16 O -0.395 6.395 17 C -0.112 4.112 18 C -0.110 4.110 19 C -0.169 4.169 20 C -0.351 4.351 21 S 0.363 5.637 22 C -0.348 4.348 23 C -0.282 4.282 24 H 0.103 0.897 25 H 0.133 0.867 26 H 0.164 0.836 27 H 0.262 0.738 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.163 0.837 31 H 0.202 0.798 32 H 0.190 0.810 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.423 -7.814 8.194 16.083 hybrid contribution 0.829 2.979 -1.229 3.328 sum -10.593 -4.835 6.964 13.568 Atomic orbital electron populations 1.69775 1.08821 1.30727 1.34905 1.26801 0.95733 1.04460 0.90930 0.85035 0.79173 0.75728 0.79029 1.18391 1.19118 1.18554 1.19887 0.96130 0.90982 1.44508 0.90059 1.18029 0.91289 0.93234 0.87064 1.22106 1.04910 0.94341 1.10774 1.22184 0.90348 0.97448 0.94337 1.67317 1.15694 1.28799 1.17951 1.18496 0.87810 0.90238 0.92806 1.43530 1.22126 1.10562 1.53945 1.21544 0.88218 0.82777 0.79173 1.90763 1.64264 1.34061 1.50377 1.20427 0.92366 0.94353 1.04004 1.18549 1.00899 0.96982 0.94532 1.20258 1.01034 0.94736 1.00889 1.25839 1.08302 1.00351 1.00624 1.84008 1.51815 1.12091 1.15835 1.25666 1.07708 0.97482 1.03965 1.21673 1.01398 0.95904 1.09218 0.89746 0.86748 0.83553 0.73783 0.85016 0.85305 0.83695 0.79794 0.81020 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.42 10.70 21.84 0.23 -39.19 16 2 C 0.04 1.75 5.31 85.29 0.45 2.20 16 3 Si 0.99 35.75 29.57 68.60 2.03 37.78 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.27 -9.27 7.11 99.48 0.71 -8.57 16 6 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 7 C -0.48 -25.11 9.14 23.52 0.21 -24.89 16 8 H 0.08 4.06 7.87 -2.91 -0.02 4.04 16 9 C 0.11 6.01 5.60 -21.12 -0.12 5.89 16 10 C -0.30 -14.96 9.90 22.84 0.23 -14.73 16 11 C 0.11 5.44 11.15 84.50 0.94 6.38 16 12 N -0.58 -30.06 7.89 -193.53 -1.53 -31.58 16 13 C 0.33 16.25 7.40 132.76 0.98 17.24 16 14 N -0.65 -24.76 5.39 -308.66 -1.66 -26.42 16 15 C 0.50 17.84 7.77 87.66 0.68 18.52 16 16 O -0.52 -24.06 14.33 -3.03 -0.04 -24.10 16 17 C -0.07 -1.60 5.96 29.10 0.17 -1.43 16 18 C -0.10 -2.46 4.29 -20.92 -0.09 -2.55 16 19 C -0.14 -3.40 9.98 21.22 0.21 -3.19 16 20 C -0.22 -4.69 11.23 66.72 0.75 -3.94 16 21 S 0.10 2.14 23.34 -56.49 -1.32 0.82 16 22 C -0.21 -5.14 10.98 66.72 0.73 -4.41 16 23 C -0.26 -13.16 8.61 22.99 0.20 -12.97 16 24 H 0.29 12.50 8.29 -92.71 -0.77 11.73 16 25 H 0.11 5.26 8.06 -2.91 -0.02 5.24 16 26 H 0.15 6.24 8.06 -2.91 -0.02 6.22 16 27 H 0.42 12.65 8.70 -92.71 -0.81 11.85 16 28 H 0.13 2.19 8.12 -2.39 -0.02 2.17 16 29 H 0.13 2.29 8.13 -2.39 -0.02 2.27 16 30 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 31 H 0.18 2.97 8.06 -2.91 -0.02 2.94 16 32 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.13 6.60 6.11 -2.91 -0.02 6.58 16 Total: -1.00 -69.60 307.36 3.42 -66.18 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: 0.35 Total: 34.39 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 5.36 Total: -17.88 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -2.96 Total: -97.19 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.04 Total: -24.10 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 2.03 Total: 37.78 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.32 Total: 0.82 kcal Total: -69.60 3.42 -66.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532181224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.587 kcal (2) G-P(sol) polarization free energy of solvation -69.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds