Wall clock time and date at job start Tue Mar 31 2020 05:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00264 * 2 1 4 4 H 1.48493 * 109.47469 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46969 * 300.00037 * 3 2 1 6 6 H 1.48500 * 109.47124 * 59.99627 * 3 2 1 7 7 C 1.38797 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00172 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99750 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47676 * 305.00283 * 10 9 7 12 12 C 1.50706 * 109.47100 * 65.00246 * 10 9 7 13 13 C 1.38232 * 119.99947 * 51.30590 * 12 10 9 14 14 C 1.38235 * 120.00049 * 179.78830 * 13 12 10 15 15 C 1.38238 * 119.99738 * 0.44479 * 14 13 12 16 16 C 1.38232 * 119.99895 * 359.81174 * 15 14 13 17 17 C 1.38231 * 120.00359 * 359.97290 * 16 15 14 18 18 C 1.50702 * 109.47131 * 184.99929 * 10 9 7 19 19 C 1.38243 * 119.97505 * 128.52589 * 18 10 9 20 20 C 1.38197 * 120.02669 * 179.97438 * 19 18 10 21 21 C 1.38463 * 119.97231 * 359.97438 * 20 19 18 22 22 F 1.35101 * 120.02281 * 179.97438 * 21 20 19 23 23 C 1.38455 * 119.94787 * 359.97438 * 21 20 19 24 24 C 1.38191 * 119.97983 * 0.02562 * 23 21 20 25 25 H 0.97001 * 120.00046 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.99893 * 0.02562 * 13 12 10 27 27 H 1.08000 * 120.00568 * 180.27343 * 14 13 12 28 28 H 1.07998 * 119.99810 * 179.83120 * 15 14 13 29 29 H 1.08002 * 119.99669 * 179.97438 * 16 15 14 30 30 H 1.08003 * 120.00437 * 179.97438 * 17 16 15 31 31 H 1.07997 * 119.98912 * 0.27388 * 19 18 10 32 32 H 1.08003 * 120.01321 * 180.02562 * 20 19 18 33 33 H 1.08006 * 120.00983 * 179.97438 * 23 21 20 34 34 H 1.07998 * 119.99266 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0005 11 1 3.1730 -3.6734 -0.8412 12 6 3.2865 -3.7543 1.2883 13 6 2.6229 -3.8059 2.4998 14 6 3.3304 -3.6845 3.6812 15 6 4.7004 -3.5025 3.6507 16 6 5.3633 -3.4456 2.4390 17 6 4.6564 -3.5714 1.2578 18 6 1.9907 -5.2986 -0.1233 19 6 2.5005 -6.1432 -1.0916 20 6 2.0202 -7.4340 -1.2058 21 6 1.0284 -7.8813 -0.3494 22 9 0.5578 -9.1428 -0.4604 23 6 0.5194 -7.0348 0.6207 24 6 1.0011 -5.7444 0.7330 25 1 -0.4850 0.8400 -0.0004 26 1 1.5521 -3.9448 2.5235 27 1 2.8126 -3.7292 4.6279 28 1 5.2528 -3.4049 4.5736 29 1 6.4336 -3.3029 2.4152 30 1 5.1742 -3.5265 0.3111 31 1 3.2778 -5.7959 -1.7561 32 1 2.4190 -8.0939 -1.9622 33 1 -0.2546 -7.3825 1.2890 34 1 0.6040 -5.0838 1.4894 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549200397.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:36 Heat of formation + Delta-G solvation = -4.787325 kcal Electronic energy + Delta-G solvation = -19454.720107 eV Core-core repulsion = 16357.553413 eV Total energy + Delta-G solvation = -3097.166694 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.73271 -39.41891 -38.21833 -33.32355 -32.49303 -31.03564 -30.40139 -29.70098 -26.10338 -25.35090 -23.05981 -21.94305 -21.82492 -20.52911 -17.83830 -17.39269 -16.54327 -16.16444 -15.44733 -15.28953 -14.96036 -14.83898 -14.67525 -14.11312 -13.47124 -13.42567 -13.14053 -13.09428 -12.81786 -12.42602 -12.17696 -11.91762 -11.62746 -11.12548 -11.09395 -10.84918 -10.79462 -10.64534 -10.46496 -9.92762 -9.14900 -8.91592 -8.65508 -8.43565 -8.20571 -8.03938 -6.62710 -6.29275 -4.00617 1.30593 1.44392 1.84497 1.89601 3.15182 3.18150 3.26576 3.37797 3.88626 4.11247 4.31342 4.43753 4.91218 5.01647 5.07227 5.08597 5.23605 5.32287 5.36385 5.43921 5.48865 5.56518 5.63015 5.89001 5.99740 6.01727 6.13829 6.23988 6.31072 6.43307 6.46554 6.52443 6.79837 6.89487 6.95662 7.09045 7.15907 7.47369 7.58254 8.33238 9.18986 10.78803 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.005830 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.325698 B = 4801.450994 C = 5898.578444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.514 4.514 8 H 0.076 0.924 9 S -0.091 6.091 10 C -0.020 4.020 11 H 0.087 0.913 12 C -0.044 4.044 13 C -0.090 4.090 14 C -0.123 4.123 15 C -0.133 4.133 16 C -0.125 4.125 17 C -0.117 4.117 18 C -0.047 4.047 19 C -0.085 4.085 20 C -0.154 4.154 21 C 0.083 3.917 22 F -0.147 7.147 23 C -0.151 4.151 24 C -0.075 4.075 25 H 0.267 0.733 26 H 0.128 0.872 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.032 -11.285 2.780 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.135 4.135 3 Si 0.742 3.258 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.662 4.662 8 H 0.094 0.906 9 S 0.144 5.856 10 C -0.148 4.148 11 H 0.105 0.895 12 C -0.047 4.047 13 C -0.109 4.109 14 C -0.142 4.142 15 C -0.151 4.151 16 C -0.143 4.143 17 C -0.137 4.137 18 C -0.049 4.049 19 C -0.105 4.105 20 C -0.173 4.173 21 C 0.063 3.937 22 F -0.126 7.126 23 C -0.170 4.170 24 C -0.094 4.094 25 H 0.077 0.923 26 H 0.146 0.854 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.664 -11.353 2.724 12.573 hybrid contribution 1.741 1.262 -0.073 2.151 sum 6.405 -10.091 2.652 12.243 Atomic orbital electron populations 1.70000 1.05887 1.27354 1.47493 1.24968 0.95014 0.99010 0.94506 0.86148 0.79817 0.81963 0.77884 1.19516 1.20592 1.20580 1.22754 0.94759 0.90479 1.58204 0.90613 1.84813 1.06338 0.98481 1.96012 1.21206 1.01784 0.94810 0.97031 0.89480 1.19812 0.93159 0.97405 0.94278 1.21092 1.00204 0.98108 0.91509 1.21048 0.94221 1.00993 0.97907 1.20983 0.94735 1.02043 0.97387 1.20953 0.99224 1.01499 0.92668 1.20959 0.93670 1.01124 0.97938 1.19508 0.95911 0.94144 0.95313 1.20875 0.99476 0.92331 0.97782 1.21005 0.98403 0.97296 1.00588 1.17686 0.97373 0.79851 0.98741 1.91459 1.87652 1.37805 1.95679 1.21094 1.02215 0.94344 0.99350 1.21096 0.95047 0.94436 0.98804 0.92291 0.85439 0.86579 0.86933 0.86858 0.86790 0.85196 0.85125 0.84950 0.84156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.16 13.22 55.49 0.73 -24.42 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.51 -13.93 9.10 30.94 0.28 -13.65 16 8 H 0.08 2.04 7.74 -52.49 -0.41 1.63 16 9 S -0.09 -2.21 19.19 -107.50 -2.06 -4.27 16 10 C -0.02 -0.39 2.50 -29.03 -0.07 -0.46 16 11 H 0.09 1.66 7.66 -51.92 -0.40 1.26 16 12 C -0.04 -0.81 4.30 -104.62 -0.45 -1.26 16 13 C -0.09 -1.61 8.32 -39.58 -0.33 -1.94 16 14 C -0.12 -1.95 10.05 -39.58 -0.40 -2.35 16 15 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 16 C -0.13 -1.91 10.05 -39.59 -0.40 -2.30 16 17 C -0.12 -1.98 9.67 -39.58 -0.38 -2.36 16 18 C -0.05 -0.79 4.78 -104.61 -0.50 -1.29 16 19 C -0.09 -1.23 9.67 -39.59 -0.38 -1.61 16 20 C -0.15 -2.06 10.03 -39.51 -0.40 -2.46 16 21 C 0.08 1.18 7.30 -39.42 -0.29 0.89 16 22 F -0.15 -2.08 17.27 2.25 0.04 -2.04 16 23 C -0.15 -2.15 10.03 -39.52 -0.40 -2.55 16 24 C -0.07 -1.19 8.33 -39.59 -0.33 -1.52 16 25 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.13 2.26 5.70 -52.49 -0.30 1.96 16 27 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.11 1.75 7.96 -52.48 -0.42 1.33 16 31 H 0.13 1.62 7.96 -52.49 -0.42 1.20 16 32 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 33 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.14 2.25 5.70 -52.49 -0.30 1.95 16 LS Contribution 311.55 15.07 4.69 4.69 Total: -1.00 -29.81 311.55 -9.64 -39.46 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -3.49 Total: 3.68 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: -4.53 Total: -33.29 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.73 Total: -24.42 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -2.21 SS G_CDS: -2.06 Total: -4.27 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.81 -9.64 -39.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549200397.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.668 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds