Wall clock time and date at job start Tue Mar 31 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46750 * 2 1 4 4 C 1.50696 * 109.46986 * 119.99364 * 2 1 3 5 5 N 1.29414 * 125.70184 * 299.98186 * 4 2 1 6 6 N 1.26398 * 116.48143 * 180.02562 * 5 4 2 7 7 C 1.29412 * 116.47270 * 359.97438 * 6 5 4 8 8 C 1.50703 * 125.69620 * 180.02562 * 7 6 5 9 9 S 1.81403 * 109.46906 * 89.96002 * 8 7 6 10 10 O 1.42105 * 109.47013 * 63.61352 * 9 8 7 11 11 C 1.81397 * 102.99970 * 179.97438 * 9 8 7 12 12 C 1.52993 * 109.47373 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.47514 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99531 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00189 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00255 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00106 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47330 * 59.99917 * 17 15 13 19 19 H 1.48500 * 109.47424 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47161 * 299.99749 * 17 15 13 21 21 S 1.71218 * 125.69592 * 120.00699 * 4 2 1 22 22 H 1.08991 * 109.47777 * 299.99954 * 1 2 3 23 23 H 1.09003 * 109.47141 * 60.00567 * 1 2 3 24 24 H 1.09007 * 109.46944 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47323 * 239.99765 * 2 1 3 26 26 H 1.08999 * 109.46878 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46835 * 299.99620 * 3 2 1 28 28 H 1.08997 * 109.47609 * 59.99415 * 3 2 1 29 29 H 1.08998 * 109.47184 * 209.95574 * 8 7 6 30 30 H 1.08996 * 109.46734 * 329.95937 * 8 7 6 31 31 H 1.09007 * 109.47188 * 300.00172 * 11 9 8 32 32 H 1.09005 * 109.47013 * 59.99927 * 11 9 8 33 33 H 1.09000 * 109.47554 * 300.00115 * 12 11 9 34 34 H 1.09005 * 109.46985 * 60.00063 * 12 11 9 35 35 H 0.97002 * 120.00481 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7889 -0.3653 2.4539 6 7 2.3006 -1.0881 3.3557 7 6 3.0107 -2.0933 2.9557 8 6 3.7119 -3.0851 3.8478 9 16 2.5960 -4.4694 4.2071 10 8 2.2905 -5.1568 3.0015 11 6 3.6018 -5.5381 5.2733 12 6 2.7891 -6.7718 5.6711 13 6 3.6245 -7.6594 6.5574 14 1 4.6340 -7.3720 6.8119 15 6 3.1001 -8.8382 7.0434 16 7 1.8706 -9.1879 6.7340 17 14 4.1353 -9.9380 8.1426 18 1 4.5273 -9.1894 9.3638 19 1 3.3465 -11.1355 8.5286 20 1 5.3549 -10.3632 7.4097 21 16 3.0209 -2.1081 1.2436 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6765 1.9565 0.8899 29 1 4.6040 -3.4586 3.3452 30 1 3.9973 -2.5971 4.7797 31 1 4.4966 -5.8502 4.7346 32 1 3.8903 -4.9890 6.1697 33 1 1.8946 -6.4595 6.2100 34 1 2.5002 -7.3211 4.7750 35 1 1.5018 -10.0175 7.0756 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596039705.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:36 Heat of formation + Delta-G solvation = 3.888200 kcal Electronic energy + Delta-G solvation = -17602.552769 eV Core-core repulsion = 14661.126187 eV Total energy + Delta-G solvation = -2941.426582 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.40451 -36.28335 -35.36973 -33.73703 -32.65151 -30.95859 -28.68535 -27.51721 -25.83875 -25.20807 -22.66292 -21.29642 -19.51247 -19.11593 -17.28595 -16.64794 -16.00444 -15.92412 -15.21612 -14.66512 -14.59259 -14.46782 -14.09329 -13.73642 -13.42792 -13.17462 -13.07964 -12.50218 -12.38048 -12.01968 -11.82480 -11.63617 -11.51043 -11.38419 -11.00391 -10.82042 -10.54900 -10.41783 -10.24858 -10.20303 -9.89633 -9.79409 -9.48347 -9.02741 -8.45254 -7.84877 -6.08177 -4.13012 0.25293 0.76458 1.26949 1.73224 2.53650 2.94672 3.28569 3.33558 3.35417 3.68466 4.00779 4.33082 4.40215 4.44955 4.68614 4.74661 4.83706 5.21502 5.26873 5.30121 5.31284 5.46366 5.50308 5.57148 5.61891 5.84237 5.87360 5.95482 6.03739 6.70834 7.43374 7.53677 7.86114 8.26246 8.46044 8.91285 9.51431 11.02411 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.052912 B = 0.002936 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.056229 B = 9535.671986 C = 9685.517087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.010 4.010 3 C -0.141 4.141 4 C -0.022 4.022 5 N -0.253 5.253 6 N -0.256 5.256 7 C 0.013 3.987 8 C -0.384 4.384 9 S 1.235 4.765 10 O -0.835 6.835 11 C -0.413 4.413 12 C 0.038 3.962 13 C -0.521 4.521 14 H 0.057 0.943 15 C 0.058 3.942 16 N -0.892 5.892 17 Si 0.897 3.103 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.277 1.277 21 S 0.173 5.827 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.149 0.851 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.030 0.970 34 H 0.024 0.976 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.530 19.823 -11.687 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 C -0.199 4.199 4 C -0.301 4.301 5 N -0.090 5.090 6 N -0.095 5.095 7 C -0.265 4.265 8 C -0.520 4.520 9 S 1.432 4.568 10 O -0.831 6.831 11 C -0.554 4.554 12 C 0.000 4.000 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.531 5.531 17 Si 0.724 3.276 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.203 1.203 21 S 0.419 5.581 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.125 0.875 30 H 0.166 0.834 31 H 0.095 0.905 32 H 0.129 0.871 33 H 0.048 0.952 34 H 0.042 0.958 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.641 19.786 -11.766 23.029 hybrid contribution 2.548 -1.463 -0.241 2.948 sum 1.907 18.323 -12.006 21.989 Atomic orbital electron populations 1.21841 0.92413 1.02791 1.03112 1.19753 0.97220 0.95958 0.90384 1.21825 1.01164 0.93824 1.03132 1.29213 1.02646 0.98845 0.99433 1.71327 1.18462 1.22989 0.96213 1.71474 1.09021 1.02496 1.26553 1.28166 1.02433 0.99908 0.95966 1.26593 1.10848 1.10445 1.04113 1.71318 0.98215 0.91253 0.96009 1.93096 1.72707 1.72239 1.45009 1.27609 1.09597 1.09567 1.08584 1.18804 0.94846 0.89134 0.97251 1.21085 0.99751 1.05014 1.30191 0.92433 1.25042 0.95100 0.97785 0.96497 1.69944 1.14427 1.23818 1.44885 0.86588 0.80155 0.79960 0.80896 1.20037 1.21140 1.20278 1.83968 1.45010 1.24195 1.04950 0.91200 0.91319 0.92216 0.89089 0.92531 0.91316 0.91248 0.87494 0.83355 0.90513 0.87126 0.95198 0.95798 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.17 37.16 0.34 -0.77 16 2 C -0.01 -0.09 3.37 -91.77 -0.31 -0.40 16 3 C -0.14 -1.00 9.18 37.16 0.34 -0.66 16 4 C -0.02 -0.26 6.04 -13.30 -0.08 -0.34 16 5 N -0.25 -3.59 11.66 32.58 0.38 -3.21 16 6 N -0.26 -3.83 11.66 32.58 0.38 -3.45 16 7 C 0.01 0.19 6.79 -13.30 -0.09 0.10 16 8 C -0.38 -4.81 6.52 36.01 0.23 -4.58 16 9 S 1.23 19.51 13.14 -107.50 -1.41 18.10 16 10 O -0.84 -17.77 18.14 -35.23 -0.64 -18.41 16 11 C -0.41 -7.67 5.86 37.15 0.22 -7.46 16 12 C 0.04 0.96 4.98 -27.88 -0.14 0.82 16 13 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 17 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 S 0.17 2.16 23.04 -107.50 -2.48 -0.31 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.15 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 32 H 0.11 1.74 8.14 -51.92 -0.42 1.31 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 330.14 15.07 4.98 4.98 Total: -1.00 -35.22 330.14 -8.01 -43.23 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -5.04 Total: -4.97 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 0.11 Total: -26.44 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 1.50 Total: -32.43 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.64 Total: -18.41 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 21.67 SS G_CDS: -3.89 Total: 17.78 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.22 -8.01 -43.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596039705.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.119 kcal (2) G-P(sol) polarization free energy of solvation -35.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds