Wall clock time and date at job start Tue Mar 31 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46750 * 2 1 4 4 C 1.50696 * 109.46986 * 119.99364 * 2 1 3 5 5 N 1.29414 * 125.70184 * 299.98186 * 4 2 1 6 6 N 1.26398 * 116.48143 * 180.02562 * 5 4 2 7 7 C 1.29412 * 116.47270 * 359.97438 * 6 5 4 8 8 C 1.50703 * 125.69620 * 180.02562 * 7 6 5 9 9 S 1.81403 * 109.46906 * 89.96002 * 8 7 6 10 10 O 1.42105 * 109.47013 * 63.61352 * 9 8 7 11 11 C 1.81397 * 102.99970 * 179.97438 * 9 8 7 12 12 C 1.52993 * 109.47373 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.47514 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99531 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00189 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00255 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00106 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47330 * 59.99917 * 17 15 13 19 19 H 1.48500 * 109.47424 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47161 * 299.99749 * 17 15 13 21 21 S 1.71218 * 125.69592 * 120.00699 * 4 2 1 22 22 H 1.08991 * 109.47777 * 299.99954 * 1 2 3 23 23 H 1.09003 * 109.47141 * 60.00567 * 1 2 3 24 24 H 1.09007 * 109.46944 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47323 * 239.99765 * 2 1 3 26 26 H 1.08999 * 109.46878 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46835 * 299.99620 * 3 2 1 28 28 H 1.08997 * 109.47609 * 59.99415 * 3 2 1 29 29 H 1.08998 * 109.47184 * 209.95574 * 8 7 6 30 30 H 1.08996 * 109.46734 * 329.95937 * 8 7 6 31 31 H 1.09007 * 109.47188 * 300.00172 * 11 9 8 32 32 H 1.09005 * 109.47013 * 59.99927 * 11 9 8 33 33 H 1.09000 * 109.47554 * 300.00115 * 12 11 9 34 34 H 1.09005 * 109.46985 * 60.00063 * 12 11 9 35 35 H 0.97002 * 120.00481 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7889 -0.3653 2.4539 6 7 2.3006 -1.0881 3.3557 7 6 3.0107 -2.0933 2.9557 8 6 3.7119 -3.0851 3.8478 9 16 2.5960 -4.4694 4.2071 10 8 2.2905 -5.1568 3.0015 11 6 3.6018 -5.5381 5.2733 12 6 2.7891 -6.7718 5.6711 13 6 3.6245 -7.6594 6.5574 14 1 4.6340 -7.3720 6.8119 15 6 3.1001 -8.8382 7.0434 16 7 1.8706 -9.1879 6.7340 17 14 4.1353 -9.9380 8.1426 18 1 4.5273 -9.1894 9.3638 19 1 3.3465 -11.1355 8.5286 20 1 5.3549 -10.3632 7.4097 21 16 3.0209 -2.1081 1.2436 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6765 1.9565 0.8899 29 1 4.6040 -3.4586 3.3452 30 1 3.9973 -2.5971 4.7797 31 1 4.4966 -5.8502 4.7346 32 1 3.8903 -4.9890 6.1697 33 1 1.8946 -6.4595 6.2100 34 1 2.5002 -7.3211 4.7750 35 1 1.5018 -10.0175 7.0756 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596039705.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:36 Heat of formation + Delta-G solvation = -21.178448 kcal Electronic energy + Delta-G solvation = -17603.639741 eV Core-core repulsion = 14661.126187 eV Total energy + Delta-G solvation = -2942.513553 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.43509 -37.02331 -36.88366 -35.73963 -33.65231 -32.89226 -29.68368 -28.09581 -27.43472 -26.58453 -23.62926 -23.03740 -20.52852 -20.05137 -18.82443 -18.43860 -17.14046 -16.87897 -16.57687 -16.19420 -15.92276 -15.74878 -15.16475 -14.95287 -14.39621 -14.36836 -14.17573 -14.06089 -13.53222 -13.13146 -13.04589 -12.80374 -12.67964 -12.62211 -12.27775 -12.17076 -12.02638 -11.98129 -11.61113 -11.50384 -11.29165 -11.20709 -10.79529 -10.59182 -10.43766 -9.21904 -8.21487 -6.34771 -0.77653 -0.21656 0.26249 0.47737 1.40507 1.43509 1.46572 1.51635 1.66458 2.40208 2.60956 2.91025 3.11123 3.34809 3.64962 3.85958 4.06344 4.09397 4.26548 4.32107 4.45805 4.50347 4.63497 4.78331 4.86631 4.90285 5.00767 5.04519 5.29942 5.34107 5.42257 5.49909 5.76478 6.16335 6.80340 7.34867 7.42236 8.89427 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.052912 B = 0.002936 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.056229 B = 9535.671986 C = 9685.517087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.016 4.016 3 C -0.136 4.136 4 C -0.008 4.008 5 N -0.279 5.279 6 N -0.269 5.269 7 C -0.008 4.008 8 C -0.369 4.369 9 S 1.274 4.726 10 O -0.896 6.896 11 C -0.412 4.412 12 C 0.035 3.965 13 C -0.541 4.541 14 H 0.068 0.932 15 C -0.003 4.003 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.259 1.259 19 H -0.285 1.285 20 H -0.271 1.271 21 S 0.178 5.822 22 H 0.056 0.944 23 H 0.096 0.904 24 H 0.049 0.951 25 H 0.112 0.888 26 H 0.056 0.944 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.120 0.880 30 H 0.185 0.815 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.022 0.978 34 H -0.022 1.022 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.906 21.440 -11.870 24.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 C -0.195 4.195 4 C -0.288 4.288 5 N -0.116 5.116 6 N -0.109 5.109 7 C -0.287 4.287 8 C -0.508 4.508 9 S 1.474 4.526 10 O -0.891 6.891 11 C -0.551 4.551 12 C -0.004 4.004 13 C -0.580 4.580 14 H 0.086 0.914 15 C -0.201 4.201 16 N -0.574 5.574 17 Si 0.792 3.208 18 H -0.183 1.183 19 H -0.210 1.210 20 H -0.196 1.196 21 S 0.424 5.576 22 H 0.075 0.925 23 H 0.114 0.886 24 H 0.068 0.932 25 H 0.130 0.870 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.139 0.861 30 H 0.202 0.798 31 H 0.091 0.909 32 H 0.163 0.837 33 H 0.040 0.960 34 H -0.003 1.003 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.734 21.376 -11.928 24.490 hybrid contribution 2.102 -1.794 -0.312 2.781 sum 2.836 19.583 -12.240 23.266 Atomic orbital electron populations 1.21849 0.91878 1.02389 1.03864 1.20081 0.97605 0.96695 0.89466 1.21816 1.01150 0.92788 1.03769 1.29861 1.00953 0.98051 0.99911 1.71299 1.19619 1.23704 0.97005 1.71434 1.09147 1.02855 1.27424 1.28298 1.03177 1.00332 0.96885 1.26389 1.10014 1.08254 1.06171 1.70691 0.97666 0.90105 0.94126 1.93002 1.74909 1.73787 1.47443 1.27483 1.08674 1.08028 1.10951 1.18655 0.95429 0.91378 0.94902 1.21620 1.00470 1.05701 1.30187 0.91366 1.26045 0.96310 0.99599 0.98139 1.70092 1.16415 1.24485 1.46404 0.85459 0.78287 0.77827 0.79234 1.18309 1.21011 1.19643 1.83956 1.45077 1.24405 1.04147 0.92485 0.88563 0.93188 0.86951 0.92533 0.88704 0.92593 0.86109 0.79802 0.90923 0.83669 0.95999 1.00324 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.17 71.98 0.66 -1.28 16 2 C -0.02 -0.23 3.37 -11.54 -0.04 -0.27 16 3 C -0.14 -1.62 9.18 71.98 0.66 -0.96 16 4 C -0.01 -0.19 6.04 88.46 0.53 0.34 16 5 N -0.28 -7.69 11.66 -50.85 -0.59 -8.28 16 6 N -0.27 -7.75 11.66 -50.85 -0.59 -8.35 16 7 C -0.01 -0.21 6.79 88.47 0.60 0.39 16 8 C -0.37 -8.44 6.52 71.24 0.46 -7.98 16 9 S 1.27 39.77 13.14 -56.49 -0.74 39.03 16 10 O -0.90 -38.95 18.14 -148.98 -2.70 -41.65 16 11 C -0.41 -15.06 5.86 71.98 0.42 -14.64 16 12 C 0.03 1.79 4.98 29.85 0.15 1.94 16 13 C -0.54 -30.08 9.11 25.60 0.23 -29.84 16 14 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 15 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 16 N -0.93 -56.93 13.29 21.44 0.28 -56.64 16 17 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 18 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 S 0.18 4.24 23.04 -56.49 -1.30 2.94 16 22 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.18 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.15 4.22 8.14 -2.39 -0.02 4.20 16 33 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 34 H -0.02 -1.29 8.14 -2.38 -0.02 -1.31 16 35 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -78.51 330.14 1.60 -76.90 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 1.08 Total: 2.44 kcal Atomic # 6 Polarization: -56.16 SS G_CDS: 4.15 Total: -52.01 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -0.90 Total: -73.27 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -2.70 Total: -41.65 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 44.01 SS G_CDS: -2.04 Total: 41.97 kcal Total: -78.51 1.60 -76.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596039705.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.726 kcal (2) G-P(sol) polarization free energy of solvation -78.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds